Artür Manukyan
@arturmansl.bsky.social
Network (Graph) Scientist. Computational and Spatial Biology. Statistical Learning for Bioinformatics.
Reposted by Artür Manukyan
"Bioconductor Spatial Data and Image Analysis Hackathon" https://doi.org/10.37044/osf.io/9ej32_v1
"We report the outcomes of the Bioconductor Spatial Data and Image Analysis Hackathon, held in Venice, Italy in April 2026. Twenty-seven researchers and […]
[Original post on fediscience.org]
"We report the outcomes of the Bioconductor Spatial Data and Image Analysis Hackathon, held in Venice, Italy in April 2026. Twenty-seven researchers and […]
[Original post on fediscience.org]
June 15, 2026 at 7:12 AM
"Bioconductor Spatial Data and Image Analysis Hackathon" https://doi.org/10.37044/osf.io/9ej32_v1
"We report the outcomes of the Bioconductor Spatial Data and Image Analysis Hackathon, held in Venice, Italy in April 2026. Twenty-seven researchers and […]
[Original post on fediscience.org]
"We report the outcomes of the Bioconductor Spatial Data and Image Analysis Hackathon, held in Venice, Italy in April 2026. Twenty-seven researchers and […]
[Original post on fediscience.org]
Reposted by Artür Manukyan
Excited that the {anndataR} 📦 publication is out academic.oup.com/bioinformati... 🎉! I hope this makes it easier to move single-cell data between R and Python and encourages people to take advantage of both languages. Check it out on @bioconductor.bsky.social bioconductor.org/packages/ann....
June 10, 2026 at 9:09 AM
Excited that the {anndataR} 📦 publication is out academic.oup.com/bioinformati... 🎉! I hope this makes it easier to move single-cell data between R and Python and encourages people to take advantage of both languages. Check it out on @bioconductor.bsky.social bioconductor.org/packages/ann....
We did something cool … 😁
@lucamarconato.bsky.social
@lucamarconato.bsky.social
"2nd SpatialData Hackathon: Frameworks, Formats and Interoperability" https://doi.org/10.37044/osf.io/s6bph_v1
"The event gathered experts to advance spatial omics through four hackathon tracks: (i) R interoperability, (ii) accessibility and performance of […]
[Original post on fediscience.org]
"The event gathered experts to advance spatial omics through four hackathon tracks: (i) R interoperability, (ii) accessibility and performance of […]
[Original post on fediscience.org]
June 7, 2026 at 11:53 PM
We did something cool … 😁
@lucamarconato.bsky.social
@lucamarconato.bsky.social
Reposted by Artür Manukyan
Ioannis Vlachos (Associate Professor of Pathology, Director of the Spatial Technologies Unit, Harvard Medical School) will be speaking at #FOGBoston! He’ll join a panel discussion on Spatial Technologies: What’s Real, What’s Hype, What’s Missing. More info: hubs.la/Q044gKQm0 @ioavlachos.bsky.social
May 1, 2026 at 3:22 PM
Ioannis Vlachos (Associate Professor of Pathology, Director of the Spatial Technologies Unit, Harvard Medical School) will be speaking at #FOGBoston! He’ll join a panel discussion on Spatial Technologies: What’s Real, What’s Hype, What’s Missing. More info: hubs.la/Q044gKQm0 @ioavlachos.bsky.social
Reposted by Artür Manukyan
May 28, 2026 at 8:41 AM
Reposted by Artür Manukyan
Thanks to input from @helucro.bsky.social, Daria Lazic, Hugo Gruson, Artür Manukyan and many others, there is now a whole new level of maturity and ease-of-use for spatial omics data, see helenalc.github.io/SpatialData....
May 29, 2026 at 1:46 PM
Thanks to input from @helucro.bsky.social, Daria Lazic, Hugo Gruson, Artür Manukyan and many others, there is now a whole new level of maturity and ease-of-use for spatial omics data, see helenalc.github.io/SpatialData....
Reposted by Artür Manukyan
📢 CSAMA 2026: Biological Data Science Summer School registrations are open for its 22nd edition, taking place in:
📍 Bressanone–Brixen, Italy
🗓 24–29 May 2026
🔗 Learn more and register: csama2026.bioconductor.eu
#CSAMA2026 #Bioconductor
📍 Bressanone–Brixen, Italy
🗓 24–29 May 2026
🔗 Learn more and register: csama2026.bioconductor.eu
#CSAMA2026 #Bioconductor
March 6, 2026 at 9:30 AM
📢 CSAMA 2026: Biological Data Science Summer School registrations are open for its 22nd edition, taking place in:
📍 Bressanone–Brixen, Italy
🗓 24–29 May 2026
🔗 Learn more and register: csama2026.bioconductor.eu
#CSAMA2026 #Bioconductor
📍 Bressanone–Brixen, Italy
🗓 24–29 May 2026
🔗 Learn more and register: csama2026.bioconductor.eu
#CSAMA2026 #Bioconductor
Reposted by Artür Manukyan
🚀 We're looking for people to join Malva! 🧬 @danilexn.bsky.social
Malva is the first search engine for single-cell genomics: we process massive amounts of sequencing data to enable ultrafast analysis of millions of cells.
(1/4)
Malva is the first search engine for single-cell genomics: we process massive amounts of sequencing data to enable ultrafast analysis of millions of cells.
(1/4)
February 27, 2026 at 9:17 AM
🚀 We're looking for people to join Malva! 🧬 @danilexn.bsky.social
Malva is the first search engine for single-cell genomics: we process massive amounts of sequencing data to enable ultrafast analysis of millions of cells.
(1/4)
Malva is the first search engine for single-cell genomics: we process massive amounts of sequencing data to enable ultrafast analysis of millions of cells.
(1/4)
Reposted by Artür Manukyan
We are hiring a Research Software Engineer to enhance and maintain the SpatialData framework.
We will work together with colleagues at EMBL, DKFZ, GSK, and across the scverse community.
🔗 Deadline: 15/02/2026
embl.wd103.myworkdayjobs.com/en-US/EMBL/d...
We will work together with colleagues at EMBL, DKFZ, GSK, and across the scverse community.
🔗 Deadline: 15/02/2026
embl.wd103.myworkdayjobs.com/en-US/EMBL/d...
Research Software Engineer - Spatial-omics
The Oliver Stegle team and the Bioimage Analysis Support Team at EMBL Heidelberg are looking for a research software engineer to contribute to the development and maintenance of highly-used open-sourc...
embl.wd103.myworkdayjobs.com
February 2, 2026 at 9:38 AM
We are hiring a Research Software Engineer to enhance and maintain the SpatialData framework.
We will work together with colleagues at EMBL, DKFZ, GSK, and across the scverse community.
🔗 Deadline: 15/02/2026
embl.wd103.myworkdayjobs.com/en-US/EMBL/d...
We will work together with colleagues at EMBL, DKFZ, GSK, and across the scverse community.
🔗 Deadline: 15/02/2026
embl.wd103.myworkdayjobs.com/en-US/EMBL/d...
Reposted by Artür Manukyan
Registration now open for CSAMA!
📜 csama2026.bioconductor.eu
Highly recommend for learning data science with a scenery, plus a fantastic crowd of students and faculty alike!
📸 from the traditional mid-week hike during last year’s edition.
📜 csama2026.bioconductor.eu
Highly recommend for learning data science with a scenery, plus a fantastic crowd of students and faculty alike!
📸 from the traditional mid-week hike during last year’s edition.
February 2, 2026 at 9:55 AM
Registration now open for CSAMA!
📜 csama2026.bioconductor.eu
Highly recommend for learning data science with a scenery, plus a fantastic crowd of students and faculty alike!
📸 from the traditional mid-week hike during last year’s edition.
📜 csama2026.bioconductor.eu
Highly recommend for learning data science with a scenery, plus a fantastic crowd of students and faculty alike!
📸 from the traditional mid-week hike during last year’s edition.
Reposted by Artür Manukyan
Apply for the Ascona workshop "Statistical and AI methods for multi-modal multi-scale modeling of biological systems", 28 Jun-3 Jul 2026 on Monte Verità, Lago Maggiore at the foot of the Swiss Alps.
ascona2026.sciencesconf.org
ascona2026.sciencesconf.org
January 15, 2026 at 4:16 PM
Apply for the Ascona workshop "Statistical and AI methods for multi-modal multi-scale modeling of biological systems", 28 Jun-3 Jul 2026 on Monte Verità, Lago Maggiore at the foot of the Swiss Alps.
ascona2026.sciencesconf.org
ascona2026.sciencesconf.org
Reposted by Artür Manukyan
Thanks to the authors for sharing all components of this beautiful mouse embryo spatial transcriptomics data from cell gene counts to per-molecule coordinates: www.ahajournals.org/doi/full/10....
So I vibe coded an app to explore the 3D subcellular transcript organization: jef.works/CellCarto-Mo...
So I vibe coded an app to explore the 3D subcellular transcript organization: jef.works/CellCarto-Mo...
January 15, 2026 at 7:45 PM
Thanks to the authors for sharing all components of this beautiful mouse embryo spatial transcriptomics data from cell gene counts to per-molecule coordinates: www.ahajournals.org/doi/full/10....
So I vibe coded an app to explore the 3D subcellular transcript organization: jef.works/CellCarto-Mo...
So I vibe coded an app to explore the 3D subcellular transcript organization: jef.works/CellCarto-Mo...
Reposted by Artür Manukyan
📖 Big news! We just released the first five chapters of our new book, Hello Data Science. It is a fully open-access resource written for beginners. Please help us spread the word! A few points about the book are below 👇
🔗 www.hellodata.science
#rstats #datascience #tidyverse
🔗 www.hellodata.science
#rstats #datascience #tidyverse
January 14, 2026 at 5:34 AM
📖 Big news! We just released the first five chapters of our new book, Hello Data Science. It is a fully open-access resource written for beginners. Please help us spread the word! A few points about the book are below 👇
🔗 www.hellodata.science
#rstats #datascience #tidyverse
🔗 www.hellodata.science
#rstats #datascience #tidyverse
Reposted by Artür Manukyan
“Analysis of Biological Data with Python” started today for biology bachelor students 🧬🐍
Want to learn Python for data analysis?
Slides are freely available:
github.com/bpucker/teac...
#Python #DataAnalysis #Biology #OpenScience #BigData #Bioinformatics #DataScience @puckerlab.bsky.social
Want to learn Python for data analysis?
Slides are freely available:
github.com/bpucker/teac...
#Python #DataAnalysis #Biology #OpenScience #BigData #Bioinformatics #DataScience @puckerlab.bsky.social
January 12, 2026 at 9:18 PM
“Analysis of Biological Data with Python” started today for biology bachelor students 🧬🐍
Want to learn Python for data analysis?
Slides are freely available:
github.com/bpucker/teac...
#Python #DataAnalysis #Biology #OpenScience #BigData #Bioinformatics #DataScience @puckerlab.bsky.social
Want to learn Python for data analysis?
Slides are freely available:
github.com/bpucker/teac...
#Python #DataAnalysis #Biology #OpenScience #BigData #Bioinformatics #DataScience @puckerlab.bsky.social
Reposted by Artür Manukyan
CSAMA 2026 - Biological Data Science Summer School
Bressanone-Brixen, South Tyrol / Italy
24-29 May 2026
csama2026.bioconductor.eu
Statistical & computational methods for single cell and spatial omics, with lectures and hands-on exercises in R/Bioconductor.
Bressanone-Brixen, South Tyrol / Italy
24-29 May 2026
csama2026.bioconductor.eu
Statistical & computational methods for single cell and spatial omics, with lectures and hands-on exercises in R/Bioconductor.
December 17, 2025 at 2:34 PM
CSAMA 2026 - Biological Data Science Summer School
Bressanone-Brixen, South Tyrol / Italy
24-29 May 2026
csama2026.bioconductor.eu
Statistical & computational methods for single cell and spatial omics, with lectures and hands-on exercises in R/Bioconductor.
Bressanone-Brixen, South Tyrol / Italy
24-29 May 2026
csama2026.bioconductor.eu
Statistical & computational methods for single cell and spatial omics, with lectures and hands-on exercises in R/Bioconductor.
Reposted by Artür Manukyan
We are looking for a Software Developer to work on R/Python interoperability for single-cell and spatial omics methods.
🔗 Apply here: jobs.dkfz.de/en/jobs/1683...
🔗 Apply here: jobs.dkfz.de/en/jobs/1683...
Software Developer - Interoperability for Single-Cell and Spatial Omics Methods
jobs.dkfz.de
December 27, 2025 at 3:50 PM
We are looking for a Software Developer to work on R/Python interoperability for single-cell and spatial omics methods.
🔗 Apply here: jobs.dkfz.de/en/jobs/1683...
🔗 Apply here: jobs.dkfz.de/en/jobs/1683...
Reposted by Artür Manukyan
Every year, I give my lab (+myself) a "mini-sabbatical" to pursue independent learning.
This year, I'm learning to use AI tools. So I made a short film to reflect on life/death + create art in an era where it can feel like AI has usurped the value of self-expression: youtu.be/YJjmKRlmI1Q
This year, I'm learning to use AI tools. So I made a short film to reflect on life/death + create art in an era where it can feel like AI has usurped the value of self-expression: youtu.be/YJjmKRlmI1Q
Come Take A Portrait With Me | a short film
YouTube video by Prof. Jean Fan
youtu.be
January 5, 2026 at 3:08 PM
Every year, I give my lab (+myself) a "mini-sabbatical" to pursue independent learning.
This year, I'm learning to use AI tools. So I made a short film to reflect on life/death + create art in an era where it can feel like AI has usurped the value of self-expression: youtu.be/YJjmKRlmI1Q
This year, I'm learning to use AI tools. So I made a short film to reflect on life/death + create art in an era where it can feel like AI has usurped the value of self-expression: youtu.be/YJjmKRlmI1Q
Amazing opportunity, we thank #Helmholtz ScienceServe Initiative for helping us recruit talented people to develop FAIR Software for spatial omics.
You will also have the chance to join hackathons and workshop we organize with developers across @scverse.bsky.social and @bioconductor.bsky.social.
You will also have the chance to join hackathons and workshop we organize with developers across @scverse.bsky.social and @bioconductor.bsky.social.
We are looking for a Software Developer to work on R/Python interoperability for single-cell and spatial omics methods.
🔗 Apply here: jobs.dkfz.de/en/jobs/1683...
🔗 Apply here: jobs.dkfz.de/en/jobs/1683...
Software Developer - Interoperability for Single-Cell and Spatial Omics Methods
jobs.dkfz.de
December 27, 2025 at 4:07 PM
Amazing opportunity, we thank #Helmholtz ScienceServe Initiative for helping us recruit talented people to develop FAIR Software for spatial omics.
You will also have the chance to join hackathons and workshop we organize with developers across @scverse.bsky.social and @bioconductor.bsky.social.
You will also have the chance to join hackathons and workshop we organize with developers across @scverse.bsky.social and @bioconductor.bsky.social.
Reposted by Artür Manukyan
Join us to the last #GESTALT seminar the year!
Free for all GESTALT member. If you are interested in anything #spatialbiology come be part of our growing community
GESTALT Seminar Series globalspatial.org/seminar-seri...
December 19 10am EST @ioavlachos.bsky.social @lgmartelotto.bsky.social
Free for all GESTALT member. If you are interested in anything #spatialbiology come be part of our growing community
GESTALT Seminar Series globalspatial.org/seminar-seri...
December 19 10am EST @ioavlachos.bsky.social @lgmartelotto.bsky.social
Seminar Series – GESTALT – Global Alliance for Spatial Technologies
globalspatial.org
December 9, 2025 at 10:02 PM
Join us to the last #GESTALT seminar the year!
Free for all GESTALT member. If you are interested in anything #spatialbiology come be part of our growing community
GESTALT Seminar Series globalspatial.org/seminar-seri...
December 19 10am EST @ioavlachos.bsky.social @lgmartelotto.bsky.social
Free for all GESTALT member. If you are interested in anything #spatialbiology come be part of our growing community
GESTALT Seminar Series globalspatial.org/seminar-seri...
December 19 10am EST @ioavlachos.bsky.social @lgmartelotto.bsky.social
Reposted by Artür Manukyan
scverse conference 2025 done ✅ Really engaging week at Stanford with scPerturb-seq work, agentic models in biology, and strong interest in scaling software to millions of cells. Organizing alongside the rest of the @scverse.bsky.social team was a blast! Hope attendees found it productive 😄
November 21, 2025 at 5:37 PM
scverse conference 2025 done ✅ Really engaging week at Stanford with scPerturb-seq work, agentic models in biology, and strong interest in scaling software to millions of cells. Organizing alongside the rest of the @scverse.bsky.social team was a blast! Hope attendees found it productive 😄
Reposted by Artür Manukyan
We are excited to share our online book and preprint on “Orchestrating Spatial Transcriptomics Analysis with Bioconductor”!
Many people hours, calls and messages later: OSTA is now “in (pre)print”, though the real thing lives at bioconductor.org/books/OSTA.
Check it out, get in touch. We welcome any feedback, suggestions, wishes (& contributions).
It’s been a joy working with you @estellayixingdong.bsky.social!
Check it out, get in touch. We welcome any feedback, suggestions, wishes (& contributions).
It’s been a joy working with you @estellayixingdong.bsky.social!
November 22, 2025 at 12:38 PM
We are excited to share our online book and preprint on “Orchestrating Spatial Transcriptomics Analysis with Bioconductor”!
Reposted by Artür Manukyan
Many people hours, calls and messages later: OSTA is now “in (pre)print”, though the real thing lives at bioconductor.org/books/OSTA.
Check it out, get in touch. We welcome any feedback, suggestions, wishes (& contributions).
It’s been a joy working with you @estellayixingdong.bsky.social!
Check it out, get in touch. We welcome any feedback, suggestions, wishes (& contributions).
It’s been a joy working with you @estellayixingdong.bsky.social!
November 21, 2025 at 5:31 PM
Many people hours, calls and messages later: OSTA is now “in (pre)print”, though the real thing lives at bioconductor.org/books/OSTA.
Check it out, get in touch. We welcome any feedback, suggestions, wishes (& contributions).
It’s been a joy working with you @estellayixingdong.bsky.social!
Check it out, get in touch. We welcome any feedback, suggestions, wishes (& contributions).
It’s been a joy working with you @estellayixingdong.bsky.social!
Reposted by Artür Manukyan
Orchestrating Spatial Transcriptomics Analysis with Bioconductor https://www.biorxiv.org/content/10.1101/2025.11.20.688607v1
November 21, 2025 at 2:46 PM
Orchestrating Spatial Transcriptomics Analysis with Bioconductor https://www.biorxiv.org/content/10.1101/2025.11.20.688607v1
Reposted by Artür Manukyan
Switzerland is joining Horizon Europe!
We are uniting two research powerhouses.
For cutting-edge innovation that will boost our energy security, digital transformation, health and so much more.
Today is a good day for science, and for our EU-Switzerland partnership.
We are uniting two research powerhouses.
For cutting-edge innovation that will boost our energy security, digital transformation, health and so much more.
Today is a good day for science, and for our EU-Switzerland partnership.
November 10, 2025 at 2:58 PM
Switzerland is joining Horizon Europe!
We are uniting two research powerhouses.
For cutting-edge innovation that will boost our energy security, digital transformation, health and so much more.
Today is a good day for science, and for our EU-Switzerland partnership.
We are uniting two research powerhouses.
For cutting-edge innovation that will boost our energy security, digital transformation, health and so much more.
Today is a good day for science, and for our EU-Switzerland partnership.