Benoit Pons
benoitjpons.bsky.social
Benoit Pons
@benoitjpons.bsky.social
Lecturer in bacterial genomics at Université de Toulouse
Research in phage-bacteria co-evolution at LMGM-CBI @cbitoulouse.bsky.social
he/him
🧬Phages in Toulouse — November 18–20, 2026! 🦠
We are delighted to announce the next edition of Phages.fr congress, Phages in Toulouse, bringing together the phage research community for 3 days of talks, presentations & scientific discussions!
📍 Toulouse, France
📅 Nov. 18–20
Réseau Bactériophage France
Bienvenue sur le site du réseau “Phages.fr” Le réseau “Phages.fr” regroupe des scientifiques qui travaillent sur les thématiques incluant les bactériophages dont l’étude des structures, interactions moléculaires & cellulaires, écologie & évolution, thérapie phagique et biocontrôle en santé humaine, végétale & animale et industrie ainsi que des Sciences humaines et sociales. Ces scientifiques appartiennent à différents instituts publics français de recherche tels que CNRS (principal financeur), INRAE, INSERM, ANSES, Institut Pasteur mais aussi de nombreuses universités (Bordeaux, Lyon, Marseille, Montpellier, Nancy, Paris, etc) et hôpitaux, avec aussi la participation de membres d’entreprises.
Phages.fr
September 17, 2026 at 1:02 PM
Reposted by Benoit Pons
It's finally published! What a journey @brownlab.bsky.social and I have been on with this one (ask me about it over a pint 🍻). Super excited to be able to say that it's finally out in Trends (author gift link to follow)! 🦠🧫 #phagesky
September 11, 2026 at 5:36 AM
Reposted by Benoit Pons
If you have a Gmail account, you need to read this.

Google's AI now scans your emails and attachments, bank statements, tax files, medical letters, all of it. It turned on by default, and there's a class-action lawsuit over how.

Here are 5 moves to shut it off, the switch is hidden in two places:
August 31, 2026 at 2:35 PM
Reposted by Benoit Pons
🌟 Very proud of the newest Dr. in the team ,
Dr. @julielebris.bsky.social 👩‍🎓!

She brilliantly defended her PhD last Friday @pasteur.fr

Excellent thesis in terms of output & quality!

Thanks to the jury @lucyweinert.bsky.social @sylvainbrisse.bsky.social @edfeil.bsky.social Maria Halima Laaberki
June 1, 2026 at 10:29 AM
Reposted by Benoit Pons
🔬🦠 Comment #Klebsiella parvient-elle à changer de capsule aussi fréquemment pour mieux s’adapter à son environnement ?
Les travaux de @julielebris.bsky.social mis à la une par @cnrsbiologie.bsky.social 👏
-avec @epcrocha.bsky.social
#MicroSky @cbitoulouse.bsky.social
#ResultatScientifique🔎| Une bactérie capable de changer de « bouclier » pour mieux s’adapter à son environnement : une stratégie étonnante de Klebsiella pneumoniae qui éclaire ses capacités d’évolution et de résistance.

✍️ @olayarendueles.bsky.social @julielebris.bsky.social
▶️ buff.ly/q8AKHo1
May 19, 2026 at 5:52 PM
Reposted by Benoit Pons
When is an antiphage mechanism an evolved defence adaptation? This question has been on my mind for so long, because despite the field’s rapid progress there is currently no widely agreed framework in place to answer it. So @brownlab.bsky.social and I wrote this, and I'm happy to share the preprint!
The bacterial immune system: identifying evolved defense adaptations
ecoevorxiv.org
May 13, 2026 at 4:30 PM
Reposted by Benoit Pons
So happy to see this finally published in @plosbiology.org!

This is the first chapter of @julielebris.bsky.social PhD thesis demonstrating how capsules are exchanged by plug-and-play dynamics
w/ @epcrocha.bsky.social
#microsky @klebclub.bsky.social
Link below-
Check out her 🧵 for more details!
March 26, 2026 at 5:33 PM
Reposted by Benoit Pons
Today we were thrilled to host @tatianadimitriu.bsky.social at @cbitoulouse.bsky.social @cnrsbiologie.bsky.social
She discussed factors contributing to plasmid spread (defense systems, environmental factors…) - with @benoitjpons.bsky.social
February 3, 2026 at 11:11 PM
Reposted by Benoit Pons
My team at @cbitoulouse.bsky.social is recruiting a postdoc #bioinformatics with solid experience in metagenomic analyses.
Interest in evolution, ecology & MGEs is important.
The offer stands until the perfect candidate is found, and it could be you 🫵

🔁 🙏

#microSky #phagesky #UTIsky
@cnrs.fr
January 15, 2026 at 11:19 AM
Reposted by Benoit Pons
Preprint alert📢! 
Ever wondered how much bacterial parasites influence evolutionary outcomes of their host?
➡️ We co-evolved two bacterial strains in conditions in which the costs and benefits of prophage carriage varied

Here is what we found. 
www.biorxiv.org/content/10.6...
#MicroSky #PhageSky
🧵
Environment-dependent evolution drives divergent adaptive strategies and parasite dynamics in a minimal community
Prophages, phage genomes integrated into bacterial chromosomes, are widespread, yet, the extent to which these resident parasites contribute to host fitness and shape evolutionary trajectories, partic...
www.biorxiv.org
December 18, 2025 at 2:11 PM
How do bacteria choose what type of defences to use against phages? We explored that question in the last paper I worked on as a postdoc at the Uni of Exeter @uniofexeteresi.bsky.social with Stineke van Houte, Stefano Pagliara and Edze Westra (not on Bluesky)
doi.org/10.1098/rstb...
Phage provoke growth delays and SOS response induction despite CRISPR-Cas protection | Philosophical Transactions of the Royal Society B: Biological Sciences
Bacteria evolve resistance against their phage foes with a wide range of resistance strategies whose costs and benefits depend on the level of protection they confer and on the costs for maintainance....
doi.org
September 4, 2025 at 4:02 PM
Reposted by Benoit Pons
Can CRISPR-Cas systems target any phage? Yes, no, it depends? What does it depend on? The second paper from my PhD came out today in a special issue of Phil Trans B on the ecology and evolution of bacterial immune systems
doi.org/10.1098/rstb...
Phage susceptibility to a minimal, modular synthetic CRISPR-Cas system in Pseudomonas aeruginosa is nutrient dependent | Philosophical Transactions of the Royal Society B: Biological Sciences
CRISPR-Cas systems can provide adaptive, heritable immunity to their prokaryotic hosts against invading genetic material such as phages. It is clear that the importance of acquiring CRISPR-Cas immunit...
doi.org
September 4, 2025 at 11:32 AM
Reposted by Benoit Pons
PhD opportunity, please share:

We are looking for a prospective PhD student to start in October 2026 who is excited about bacteria (Klebsiella pneumoniae), how they interact, and how they exchange DNA.
All details can be found on the funder website 👉 gw4biomed.ac.uk/developing-c...
Developing CRISPR-Cas antimicrobials to tackle antibiotic resistance spread in Klebsiella pneumoniae - GW4 BioMed MRC DTP
Project Code MRCIIAR26Ex van Houte Project Type Wet lab Research Theme Infection, Immunity, Antimicrobial Resistance and Repair Project Summary Download Summary Antimicrobial resistance (AMR) poses a ...
gw4biomed.ac.uk
September 2, 2025 at 9:48 AM
Reposted by Benoit Pons
The team is growing fast!
🎉 Congratulations to Léa Masson on receiving a PhD fellowship from the BSB doctoral school @universitetoulouse.bsky.social 👏

The PhD will be co-supervised by @benoitjpons.bsky.social and myself - @cbitoulouse.bsky.social

#PhD #Microbiology #Klebsiella
July 18, 2025 at 2:24 PM
Reposted by Benoit Pons
Had an amazing time at @cbitoulouse.bsky.social! Stimulating discussions, insightful questions, and always a joy to reconnect with old friends and colleagues!
Thanks for the invitation @benoitjpons.bsky.social @olayarendueles.bsky.social
Great talk today @cbitoulouse.bsky.social from @annechevallereau.bsky.social- on the importance of surface receptors in phage adsorption and of intracellular phage defense mechanisms - and the relative importance of each of them in shaping phage host range &productive phage infection 🦠
May 9, 2025 at 4:49 PM
Reposted by Benoit Pons
Great talk today @cbitoulouse.bsky.social from @annechevallereau.bsky.social- on the importance of surface receptors in phage adsorption and of intracellular phage defense mechanisms - and the relative importance of each of them in shaping phage host range &productive phage infection 🦠
May 6, 2025 at 8:37 PM
Reposted by Benoit Pons
Would you like to see @biorxivpreprint.bsky.social add a share to blue sky button?! I know I would! Share this post to let @richardsever.bsky.social @erictopol.bsky.social and others at bioarxiv know!
December 2, 2024 at 12:10 PM
Reposted by Benoit Pons
Looking for a PhD in phage ecology, metagenomics and defence systems? We have a fully funded PhD opportunity to join us at the University of York with great collaborators.

See here for more info:
www.findaphd.com/phds/project...
November 26, 2024 at 4:40 PM
Reposted by Benoit Pons
Lovely day @ CBI with our newest team members already working hard in our brand new lab. Check out the incredible #BlueSky in #Toulouse
#MicroSky
November 15, 2024 at 10:37 AM
Reposted by Benoit Pons
I'm recruiting a Research Technician to work on plasmid transmission and antimicrobial resistance in St Andrews, to start in October. Deadline for applications is 19 June. Please share!
www.vacancies.st-andrews.ac.uk/Vacancies/W/...
Research Assistant - AR2992DM
www.vacancies.st-andrews.ac.uk
May 31, 2024 at 7:37 AM
Reposted by Benoit Pons
Just out in The ISME Journal, a paper from my time in the Westra lab. We find that the extent of phage exposure shapes subsequent resistance dynamics over longer timescales (up to 30 days).

And huge thanks to first authors @bridgetwatson.bsky.social and Loris for mammoth experiments!
CRISPR-Cas in Pseudomonas aeruginosa provides transient population-level immunity against high phage exposures

ISME Journal by Bridget Watson et al
with @ellinoralseth.bsky.social @seanmeaden.bsky.social

academic.oup.com/ismej/advanc...
January 11, 2024 at 11:25 AM