Maxime U Garcia
@maxulysse.github.io
Bioinfomagician/PhD in Bioinformatics, developing @nextflow.io @nf-co.re pipelines
Posts and RPs in English/French - He/him
Posts and RPs in English/French - He/him
Reposted by Maxime U Garcia
The Barcelona nf-core Hackathon is happening in 3 weeks!⏳ Choose from 13 projects to work on, or bring your own project idea. Today's project spotlight 👇
⚒️ Project → Benchmarking (Special Interest Group)
🧑💻 Project Lead → Kübra Narci, @ghga.bsky.social
🔗 Project Link → nf-co.re/hackathon-pr...
⚒️ Project → Benchmarking (Special Interest Group)
🧑💻 Project Lead → Kübra Narci, @ghga.bsky.social
🔗 Project Link → nf-co.re/hackathon-pr...
September 23, 2026 at 8:06 AM
The Barcelona nf-core Hackathon is happening in 3 weeks!⏳ Choose from 13 projects to work on, or bring your own project idea. Today's project spotlight 👇
⚒️ Project → Benchmarking (Special Interest Group)
🧑💻 Project Lead → Kübra Narci, @ghga.bsky.social
🔗 Project Link → nf-co.re/hackathon-pr...
⚒️ Project → Benchmarking (Special Interest Group)
🧑💻 Project Lead → Kübra Narci, @ghga.bsky.social
🔗 Project Link → nf-co.re/hackathon-pr...
Reposted by Maxime U Garcia
📆 We've extended the deadline for the Barcelona Hackathon! Choose from 13 hackathon projects, or bring your own project idea.💡Today's project spotlight ⬇️
⚒️ Project → AWS megatests overhaul
🧑💻 Project Lead → @rikehanssen.bsky.social, @seqera.io
🔗 Project Link → hubs.la/Q04yjbwG0
⚒️ Project → AWS megatests overhaul
🧑💻 Project Lead → @rikehanssen.bsky.social, @seqera.io
🔗 Project Link → hubs.la/Q04yjbwG0
September 25, 2026 at 8:01 AM
📆 We've extended the deadline for the Barcelona Hackathon! Choose from 13 hackathon projects, or bring your own project idea.💡Today's project spotlight ⬇️
⚒️ Project → AWS megatests overhaul
🧑💻 Project Lead → @rikehanssen.bsky.social, @seqera.io
🔗 Project Link → hubs.la/Q04yjbwG0
⚒️ Project → AWS megatests overhaul
🧑💻 Project Lead → @rikehanssen.bsky.social, @seqera.io
🔗 Project Link → hubs.la/Q04yjbwG0
Reposted by Maxime U Garcia
We have now have 13 projects for the Barcelona Hackathon.⛰️Check out today's project spotlight 👇 #NextflowSummit
⚒️ Project → nf-core/sarek improvements
🧑💻 Project Lead → @maxulysse.github.io, @scilifelab-ngi.bsky.social
🔗 Project Link → nf-co.re/hackathon-pr...
⚒️ Project → nf-core/sarek improvements
🧑💻 Project Lead → @maxulysse.github.io, @scilifelab-ngi.bsky.social
🔗 Project Link → nf-co.re/hackathon-pr...
September 24, 2026 at 7:44 AM
We have now have 13 projects for the Barcelona Hackathon.⛰️Check out today's project spotlight 👇 #NextflowSummit
⚒️ Project → nf-core/sarek improvements
🧑💻 Project Lead → @maxulysse.github.io, @scilifelab-ngi.bsky.social
🔗 Project Link → nf-co.re/hackathon-pr...
⚒️ Project → nf-core/sarek improvements
🧑💻 Project Lead → @maxulysse.github.io, @scilifelab-ngi.bsky.social
🔗 Project Link → nf-co.re/hackathon-pr...
Reposted by Maxime U Garcia
Saba Nafees (Myriad Genetics)→ From production Nextflow to cross-pipeline MRD variant calling via @nf-co.re /sarek
summit.nextflow.io/2026/virtual...
summit.nextflow.io/2026/virtual...
summit.nextflow.io
September 21, 2026 at 1:35 PM
Saba Nafees (Myriad Genetics)→ From production Nextflow to cross-pipeline MRD variant calling via @nf-co.re /sarek
summit.nextflow.io/2026/virtual...
summit.nextflow.io/2026/virtual...
Reposted by Maxime U Garcia
🌎Whether you're joining the online #NextflowSummit or heading to Barcelona for the @nf-co.re Hackathon or Nextflow Training, let us know you're attending!👾 Register now to create your pixel avatar: hubs.la/Q04wQpTZ0
September 7, 2026 at 7:40 AM
🌎Whether you're joining the online #NextflowSummit or heading to Barcelona for the @nf-co.re Hackathon or Nextflow Training, let us know you're attending!👾 Register now to create your pixel avatar: hubs.la/Q04wQpTZ0
Reposted by Maxime U Garcia
I spent most of my time at the 2024 #Nextflow @nf-co.re hackathon working on genomeqc. Happy to see our preprint finally published:
nf-core/genomeqc: a best-practice pipeline for comparing genome and assembly quality: www.biorxiv.org/content/10.6... 🧬💻🧪 github.com/nf-core/geno...
nf-core/genomeqc: a best-practice pipeline for comparing genome and assembly quality: www.biorxiv.org/content/10.6... 🧬💻🧪 github.com/nf-core/geno...
August 21, 2026 at 4:09 PM
I spent most of my time at the 2024 #Nextflow @nf-co.re hackathon working on genomeqc. Happy to see our preprint finally published:
nf-core/genomeqc: a best-practice pipeline for comparing genome and assembly quality: www.biorxiv.org/content/10.6... 🧬💻🧪 github.com/nf-core/geno...
nf-core/genomeqc: a best-practice pipeline for comparing genome and assembly quality: www.biorxiv.org/content/10.6... 🧬💻🧪 github.com/nf-core/geno...
Reposted by Maxime U Garcia
⏰ If you're looking to join us in Barcelona for Nextflow Training or the @nf-co.re Hackathon on October 15-16, today is your last chance to save 25%: hubs.la/Q04rsgWS0 #NextflowSummit
July 31, 2026 at 9:19 AM
⏰ If you're looking to join us in Barcelona for Nextflow Training or the @nf-co.re Hackathon on October 15-16, today is your last chance to save 25%: hubs.la/Q04rsgWS0 #NextflowSummit
Reposted by Maxime U Garcia
What's Happening?
🔹 Beginners Training - Learn how to build and run multi-step Nextflow workflows
🔹 Advanced Training - Explore advanced Nextflow capabilities to help you develop
🔹 @nf-co.re Hackathon - Collaborate on projects with the Nextflow community
🔹 Beginners Training - Learn how to build and run multi-step Nextflow workflows
🔹 Advanced Training - Explore advanced Nextflow capabilities to help you develop
🔹 @nf-co.re Hackathon - Collaborate on projects with the Nextflow community
July 24, 2026 at 1:11 PM
What's Happening?
🔹 Beginners Training - Learn how to build and run multi-step Nextflow workflows
🔹 Advanced Training - Explore advanced Nextflow capabilities to help you develop
🔹 @nf-co.re Hackathon - Collaborate on projects with the Nextflow community
🔹 Beginners Training - Learn how to build and run multi-step Nextflow workflows
🔹 Advanced Training - Explore advanced Nextflow capabilities to help you develop
🔹 @nf-co.re Hackathon - Collaborate on projects with the Nextflow community
Reposted by Maxime U Garcia
Join us in Barcelona on Oct 15-16 for @nextflow.io Training or the @nf-co.re Hackathon at the #NextflowSummit 2026!👩💻Register by Jul 31 for 25% off: hubs.la/Q04qFpbC0
July 24, 2026 at 1:11 PM
Join us in Barcelona on Oct 15-16 for @nextflow.io Training or the @nf-co.re Hackathon at the #NextflowSummit 2026!👩💻Register by Jul 31 for 25% off: hubs.la/Q04qFpbC0
Reposted by Maxime U Garcia
I cannot tell you how many times I've written basically this QC pipeline. Countless! Uncountable! Glad to see this addition to @nf-co.re.
Also, @tfenne.bsky.social, is this the first nf-core pipeline with Riker support? Or did I miss one?
github.com/nf-core/seqi...
Also, @tfenne.bsky.social, is this the first nf-core pipeline with Riker support? Or did I miss one?
github.com/nf-core/seqi...
GitHub - nf-core/seqinspector: Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The...
Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core ...
github.com
July 14, 2026 at 2:30 PM
I cannot tell you how many times I've written basically this QC pipeline. Countless! Uncountable! Glad to see this addition to @nf-co.re.
Also, @tfenne.bsky.social, is this the first nf-core pipeline with Riker support? Or did I miss one?
github.com/nf-core/seqi...
Also, @tfenne.bsky.social, is this the first nf-core pipeline with Riker support? Or did I miss one?
github.com/nf-core/seqi...
Reposted by Maxime U Garcia
Happening right now: join @ewels.bsky.social in a @nf-co.re #bytesize talk to hear all about our newest feature: monthly Newsletters!
nf-co.re/events/2026/...
nf-co.re/events/2026/...
Bytesize: nf-core newsletter
Phil Ewels, Seqera
nf-co.re
June 23, 2026 at 11:01 AM
Happening right now: join @ewels.bsky.social in a @nf-co.re #bytesize talk to hear all about our newest feature: monthly Newsletters!
nf-co.re/events/2026/...
nf-co.re/events/2026/...
Reposted by Maxime U Garcia
Interested in learning @nextflow.io?🌟Explore our upcoming Nextflow events and training opportunities below🧵
💻 What: Webinar - What's New in Nextflow 26.04
📅 When: TODAY
📍 Where: Online
seqera.io/events/what-...
💻 What: Webinar - What's New in Nextflow 26.04
📅 When: TODAY
📍 Where: Online
seqera.io/events/what-...
What's New in Nextflow 26.04: Strict Syntax, Records, Static Typing & the Module Registry | Seqera
At the Nextflow Summit Boston, we announced the release of Nextflow 26.04, with new capabilities to help you write bug-free pipeline code and catch errors early. We also introduced the Nextflow Module...
seqera.io
June 17, 2026 at 7:36 AM
Interested in learning @nextflow.io?🌟Explore our upcoming Nextflow events and training opportunities below🧵
💻 What: Webinar - What's New in Nextflow 26.04
📅 When: TODAY
📍 Where: Online
seqera.io/events/what-...
💻 What: Webinar - What's New in Nextflow 26.04
📅 When: TODAY
📍 Where: Online
seqera.io/events/what-...
Reposted by Maxime U Garcia
TaxProfiler, the @nf-co.re #metagenomics pipeline had a new major release, adding multiple cool new classifiers (metacache, sylph and melon)! Great work by Sofia, @lilianderssonli.bsky.social , @jfy133.genomic.social.ap.brid.gy and others! 🙌 github.com/nf-core/taxp...
May 23, 2026 at 5:32 PM
TaxProfiler, the @nf-co.re #metagenomics pipeline had a new major release, adding multiple cool new classifiers (metacache, sylph and melon)! Great work by Sofia, @lilianderssonli.bsky.social , @jfy133.genomic.social.ap.brid.gy and others! 🙌 github.com/nf-core/taxp...
Reposted by Maxime U Garcia
Final call for our nf-core workshop! ⏳🧬
Applications close this Wednesday, 13 May. Don't miss your chance to master workflow customisation for @nf-co.re pipelines with our expert trainers.
Apply here: www.biocommons.org.au/events/nf-co...
@sydney-crf.bsky.social
Applications close this Wednesday, 13 May. Don't miss your chance to master workflow customisation for @nf-co.re pipelines with our expert trainers.
Apply here: www.biocommons.org.au/events/nf-co...
@sydney-crf.bsky.social
WORKSHOP: Unlocking nf-core: customising workflows for your research — Australian BioCommons
A practical workshop to set you up with the foundational knowledge required to run and customise nf-core workflows in a reproducible manner. More information Apply
www.biocommons.org.au
May 11, 2026 at 5:04 AM
Final call for our nf-core workshop! ⏳🧬
Applications close this Wednesday, 13 May. Don't miss your chance to master workflow customisation for @nf-co.re pipelines with our expert trainers.
Apply here: www.biocommons.org.au/events/nf-co...
@sydney-crf.bsky.social
Applications close this Wednesday, 13 May. Don't miss your chance to master workflow customisation for @nf-co.re pipelines with our expert trainers.
Apply here: www.biocommons.org.au/events/nf-co...
@sydney-crf.bsky.social
Reposted by Maxime U Garcia
Self-paced Online Nextflow Training from the Nextflow Creators!🎓 Join @seqera.io on May 11-15 for Nextflow Training Week. Whether you're completely new to workflow management or ready to advance your skills, there's something for you. 🔗 Register now: hubs.la/Q04fnXdz0
May 5, 2026 at 8:08 AM
Self-paced Online Nextflow Training from the Nextflow Creators!🎓 Join @seqera.io on May 11-15 for Nextflow Training Week. Whether you're completely new to workflow management or ready to advance your skills, there's something for you. 🔗 Register now: hubs.la/Q04fnXdz0
Reposted by Maxime U Garcia
Who doesn't love swag?🔥 Check out the latest from the #NextflowSummit. @nextflow.io, @seqera.io, and @nf-co.re goodies - stickers and socks from the nf-core hackathon and training here in Boston!
April 28, 2026 at 5:06 PM
Who doesn't love swag?🔥 Check out the latest from the #NextflowSummit. @nextflow.io, @seqera.io, and @nf-co.re goodies - stickers and socks from the nf-core hackathon and training here in Boston!
Reposted by Maxime U Garcia
Super excited to be launching two things today: #RustQC 🦀🧬 and rewrites.bio 🚀
I used AI to rewrite 15 RNA-seq QC tools into a single Rust binary (I've never written any Rust). It ended up being over 60x faster. Here's the story 🧵
seqeralabs.github.io/RustQC/
I used AI to rewrite 15 RNA-seq QC tools into a single Rust binary (I've never written any Rust). It ended up being over 60x faster. Here's the story 🧵
seqeralabs.github.io/RustQC/
Welcome to RustQC
Fast quality control tools for sequencing data, written in Rust.
seqeralabs.github.io
April 2, 2026 at 3:51 PM
Super excited to be launching two things today: #RustQC 🦀🧬 and rewrites.bio 🚀
I used AI to rewrite 15 RNA-seq QC tools into a single Rust binary (I've never written any Rust). It ended up being over 60x faster. Here's the story 🧵
seqeralabs.github.io/RustQC/
I used AI to rewrite 15 RNA-seq QC tools into a single Rust binary (I've never written any Rust). It ended up being over 60x faster. Here's the story 🧵
seqeralabs.github.io/RustQC/
Reposted by Maxime U Garcia
We're thrilled to welcome 46 new Nextflow Ambassadors in 2026!🌍 This milestone brings our global community to a remarkable 143 ambassadors across 40 countries (our largest cohort ever).🎉 Here's to building the future of scientific workflows together! 🚀
March 16, 2026 at 2:38 PM
We're thrilled to welcome 46 new Nextflow Ambassadors in 2026!🌍 This milestone brings our global community to a remarkable 143 ambassadors across 40 countries (our largest cohort ever).🎉 Here's to building the future of scientific workflows together! 🚀
Reposted by Maxime U Garcia
Nextflow Ambassador Nour Mahfel shares her journey from complete beginner to @nf-co.re contributor with support from @seqera.io. Learn how she shifted her mindset to think in dataflow, upstream modules, and embrace working in the open.📚 hubs.la/Q03_gcw_0
January 20, 2026 at 8:43 AM
Nextflow Ambassador Nour Mahfel shares her journey from complete beginner to @nf-co.re contributor with support from @seqera.io. Learn how she shifted her mindset to think in dataflow, upstream modules, and embrace working in the open.📚 hubs.la/Q03_gcw_0
Reposted by Maxime U Garcia
New blog post! Running nf-core pipelines on ARM
https://nf-co.re/blog/2026/arm-pipelines/
https://nf-co.re/blog/2026/arm-pipelines/
January 17, 2026 at 11:01 PM
New blog post! Running nf-core pipelines on ARM
https://nf-co.re/blog/2026/arm-pipelines/
https://nf-co.re/blog/2026/arm-pipelines/
Reposted by Maxime U Garcia
Les organisateurs des #JOBIM2026 vous souhaitent une ✨ bonne année 2026 ✨ !
📣 Rappel : l’appel à mini-symposia est ouvert ✅
🚨 Il vous reste 8 jours pour soumettre vos propositions !
📅 Deadline : 21 janvier !
🔗 Infos & modalités : premc.org/jobim-2026/
#JOBIM2026 #bioinfo #symposium #Strasbourg
📣 Rappel : l’appel à mini-symposia est ouvert ✅
🚨 Il vous reste 8 jours pour soumettre vos propositions !
📅 Deadline : 21 janvier !
🔗 Infos & modalités : premc.org/jobim-2026/
#JOBIM2026 #bioinfo #symposium #Strasbourg
January 13, 2026 at 9:22 AM
Les organisateurs des #JOBIM2026 vous souhaitent une ✨ bonne année 2026 ✨ !
📣 Rappel : l’appel à mini-symposia est ouvert ✅
🚨 Il vous reste 8 jours pour soumettre vos propositions !
📅 Deadline : 21 janvier !
🔗 Infos & modalités : premc.org/jobim-2026/
#JOBIM2026 #bioinfo #symposium #Strasbourg
📣 Rappel : l’appel à mini-symposia est ouvert ✅
🚨 Il vous reste 8 jours pour soumettre vos propositions !
📅 Deadline : 21 janvier !
🔗 Infos & modalités : premc.org/jobim-2026/
#JOBIM2026 #bioinfo #symposium #Strasbourg
Reposted by Maxime U Garcia
New blog post! nf-core and AI
https://nf-co.re/blog/2026/statement-on-ai/
https://nf-co.re/blog/2026/statement-on-ai/
January 14, 2026 at 10:02 AM
New blog post! nf-core and AI
https://nf-co.re/blog/2026/statement-on-ai/
https://nf-co.re/blog/2026/statement-on-ai/
Reposted by Maxime U Garcia
Kickstart 2026 with all the latest features of Nextflow, including static types & workflow inputs/outputs!🚀 Watch the latest @seqera.io webinar showcasing these capabilities using @nf-co.re /RNAseq!
👀 Watch on-demand: hubs.la/Q03ZRYYg0
👀 Watch on-demand: hubs.la/Q03ZRYYg0
January 7, 2026 at 3:41 PM
Kickstart 2026 with all the latest features of Nextflow, including static types & workflow inputs/outputs!🚀 Watch the latest @seqera.io webinar showcasing these capabilities using @nf-co.re /RNAseq!
👀 Watch on-demand: hubs.la/Q03ZRYYg0
👀 Watch on-demand: hubs.la/Q03ZRYYg0
On a server bright on Christmas night,
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?
December 19, 2025 at 8:30 PM
On a server bright on Christmas night,
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?