Rui Guan
guan06rui.bsky.social
Rui Guan
@guan06rui.bsky.social
Computational microbiologist
Reposted by Rui Guan
You'll never dry alone: cross‐kingdom metabolic coupling supports the desiccation resilience in a macroalgal holobiont - nph.onlinelibrary.wiley.com/doi/10.1111/...
You'll never dry alone: cross‐kingdom metabolic coupling supports the desiccation resilience in a macroalgal holobiont
Click on the article title to read more.
nph.onlinelibrary.wiley.com
September 11, 2026 at 6:45 AM
Reposted by Rui Guan
Happy to share our latest work digging a bit more into what makes the the core microbiota of photosynthetic organisms convergent (or not!). Work performed @lipme-toulouse.bsky.social @cnrs.fr, in collaboration with @guan06rui.bsky.social @quadraminstitute.bsky.social tinyurl.com/3e958dt6 (1/10)
Environmental factors and microbe-microbe interactions drive the structure of the core microbiota of terrestrial microalgae
Plants and other photosynthetic organisms interact with their environment and surrounding microbiota through specialized associations. A global core microbiota has been proposed at high taxonomic levels, such as the order level. However, it remains unclear which environmental factors and how microbe-microbe interactions drive variation of this core microbiota at lower taxonomic resolution. Here, we leveraged the environmental diversity of 141 sites across the southwest of France to characterize algal populations, and their associated bacterial and fungal microbiota. We then performed a meta-analysis, combining these data with published datasets to formally identify the global core microbiota of terrestrial photosynthetic organisms, which comprises seven bacterial and five fungal orders. We next investigated diversity within this core microbiota and the environmental drivers shaping site-specific community composition. While environmental factors have a low impact on the total relative abundance of core orders, the core microbiota at the ASV-level is impacted by climatic factors, edaphic factors, and plant community descriptors. Using interaction network analysis, we finally explored how microbe-microbe interactions contribute to the assembly of stable core communities. Our results show that core ASVs occupy central positions in algal-associated microbial networks and that distinct core orders drive site-specific variation in core microbiota structure. Together, these findings highlight the importance of both environmental context and microbial interactions in shaping the composition and stability of the core microbiota associated with photosynthetic organisms. ### Competing Interest Statement The authors have declared no competing interest. European Research Council, 951444 – PATHOCOM, erc-stg-948219, EPYC Agence Nationale de la Recherche, ANR-10-LABX-41 Biotechnology and Biological Sciences Research Council, https://ror.org/00cwqg982, BB/ X011054/1, BBS/E/F/000PR13631
tinyurl.com
September 14, 2026 at 8:49 AM
Reposted by Rui Guan
Honors roll student who applied for legal admission through the now-defunct CBP app. Lost his college sports scholarship when the feds revoked TPS for all Haitian refugees. Wanted to be a doctor.

They're killing our kids, our neighbors

www.nbcnews.com/news/us-news...
Haitian student dies by suicide after ICE issued him an ankle monitor
Pierre Damas Bel, 20, of Springfield, Ohio, expressed feeling “shame and humiliation” at having to wear an ankle monitor. The college student died by suicide days later.
www.nbcnews.com
September 2, 2026 at 3:52 AM
Reposted by Rui Guan
A ketogenic diet promotes tumour growth in the small intestine in susceptible mice

go.nature.com/3TB3Cge
A high-fat, low-carbohydrate diet can feed intestinal tumours
A ketogenic diet promotes tumour growth in the small intestine in susceptible mice. In people, diet advice might need to be tailored to individual cancer risks.
go.nature.com
July 15, 2026 at 5:42 PM
Reposted by Rui Guan
Doing a linear stretch on these images shows how dramatic the "edits" were, revealing the deception in clear terms.

This should be a complete scandal for Thermo Fisher and more people in the biosciences should be talking about it.
The Thermo Fisher situation keeps getting worse. We've now collected 450+ problematic images presented as verification data in TF's antibody catalog. This includes:

🖌️ Dozens more images with duplications or painting
🖨️ Hundreds of blots that all share the same background (behold slideshow below)
June 5, 2026 at 6:23 PM
Reposted by Rui Guan
🔊 This week, the team discuss penguins picking up PFAS pollution

go.nature.com/4sG9rVI
Briefing Chat: Penguins pick up PFAS pollution
Hear the biggest stories from the world of science | 17 April 2026
go.nature.com
April 17, 2026 at 3:55 PM
Reposted by Rui Guan
🆕 Vacancy! We’re looking for a Research Scientist (Data Science) to join Professor @bioinf.bsky.social 's group to investigate how novel fermented plant-based foods influence the human gut microbiome 📊

💷 £37,500 to £43,350
🗓️ Apply by 17 May 2026
➡️ buff.ly/X88I01N
April 14, 2026 at 1:11 PM
Reposted by Rui Guan
Kathrin Wippel (UvA): Bacterial interactions influencing microbiome composition and plant performance
#NIME2026
April 9, 2026 at 1:49 PM
Reposted by Rui Guan
More immune cells should mean better outcomes.
Yet in kidney cancer, glioma, uveal melanoma - it doesn’t.

We think tissue metabolism is the missing variable.

Immunometabolic gatekeeping - preprint out now 🔗
arxiv.org/abs/2511.20883
November 27, 2025 at 9:43 AM
Reposted by Rui Guan
"These findings reinforce the urgent need to understand how drugs and other xenobiotics affect the gut microbiome."

💬 Our Director, Professor @dfigeys.bsky.social
Prebiotics reverse effects of anti-depressants on the gut microbiome - Quadram Institute
Scientists from the University of Ottawa and Beijing Institute of Lifeomics found that SSRIs, SNRIs and Tricyclic Antidepressants, commonly prescribed anti-depressants that target the…
buff.ly
November 26, 2025 at 10:01 AM
Reposted by Rui Guan
An exciting opportunity to join my group @quadraminstitute.bsky.social to contribute to the development of our work on #microbiome#food interactions using cutting edge anaerobic fermentation models
🆕 Vacancy! We're looking for a Research Scientist to explore the impact of novel carbohydrate containing foods on the gut microbiome and on health.

💷 £37,500 to £45,350
🗓️ Apply by 30 November 2025
➡️ buff.ly/CKyGwgD
November 6, 2025 at 11:32 AM
Reposted by Rui Guan
🎓 #PhDPosition !

🍔 Evolutionary and Ecological Impact of the Western Lifestyle on the Gut Microbiome with Dr Falk Hildebrand @bioinf.bsky.social

📅Apply by 2 December

➡️ buff.ly/Pf6wmqO
November 4, 2025 at 8:45 AM
Reposted by Rui Guan
Reposted by Rui Guan
🆕We’re looking for a motivated candidate to explore the evolution of the gut microbiome in patients with Inflammatory Bowel Disease, working on cutting-edge metagenomics with clinical translation 🧬

🗓️ Apply by 6 January 2026
➡️ buff.ly/dFWnLv7

@bioinf.bsky.social
October 27, 2025 at 3:30 PM
Reposted by Rui Guan
There was great energy in #Southampton for our recent launch event 🌟

Want to catch up on the highlights from an exciting day?

Check out our new event report 👇
www.giba-uk.org/highlights
October 6, 2025 at 2:25 PM
Reposted by Rui Guan
🚀 AIBIO-UK x L2D Training Scholarships

25 fully funded spots for biosciences researchers to learn:
🔹 Python
🔹 Data handling
🔹 ML & AI

🗓️ Apply by 21 Oct: forms.office.com/e/rVf0Q2H9a5

🔗 Info: aibio.ac.uk/opportunitie...

#AIBIOUK #AIinBiosciences #L2D #Scholarships
Microsoft Forms
forms.office.com
October 8, 2025 at 12:45 PM
Reposted by Rui Guan
TIRIS Postdoc fellowship call will soon be open in Toulouse! If you're interested in plant microbiota, or plant-plant interactions or experimental evolution, the ECOGEN team at the @lipme-toulouse.bsky.social would be happy to support and help with your application!
AToUT – TIRIS – Toulouse's Science In and For Society
tiris.univ-toulouse.fr
October 3, 2025 at 12:58 PM
Reposted by Rui Guan
Exciting to see this launch today! This research is an excellent example of using plant science to improve human health, and highlights the value of BBSRC’s long-term investment in plant and nutritional science🍅🔬
September 23, 2025 at 12:17 PM
Reposted by Rui Guan
Excited to share our @cp-cellhostmicrobe.bsky.social led by Magda showing how Bif has co-evolved with different animal hosts 🐒🐭🐷🐦

Key takeaways:
🔹 Host ancestry + diet shape Bif evolution
🔹 Mammals enriched for carb-busting enzymes
🔹 Untapped diversity in non-human hosts = new probiotic potential
September 11, 2025 at 2:49 PM
Reposted by Rui Guan
🚨 New pre-print from the lab! We performed a large-scale meta-analysis of the uncultured gut #microbiome in >10,000 metagenomes enabling us to identify a new candidate biomarker of health. www.biorxiv.org/content/10.1...
Meta-analysis of the uncultured gut microbiome across 11,115 global metagenomes reveals a new candidate biomarker of health
The human gut microbiome plays an important biological role in host health, yet over 60% of gut species remain uncultured and hence inaccessible to experimental manipulation. Here we analysed 11,115 h...
www.biorxiv.org
September 10, 2025 at 11:44 AM
Reposted by Rui Guan
🆕 Vacancy! We’re looking for a #Metagenomics Research Scientist to join the Laboratory of Dr Falk Hildebrand @bioinf.bsky.social to study diet impact on the gastrointestinal microbiome.

💷 £37,500 - £42,000
🗓️ Apply by 30 September 2025
➡️ buff.ly/uwqGQQm
September 3, 2025 at 11:00 AM
Reposted by Rui Guan
🆕 Blog! PhD student Glória Máté-Koncz explains the science of how we digest beans and how we study the digestion process here at the Quadram Institute 🫘
buff.ly/xuq1lcB
How do we digest beans? - Quadram Institute
PhD candidate Glória Máté-Koncz explains the science of how we digest beans and how we study the digestion process here at the Quadram Institute.
quadram.ac.uk
August 22, 2025 at 8:15 AM
Reposted by Rui Guan
Check out this week's blog from Dr Emily Jones at the @quadraminstitute.bsky.social to hear about her trip to Brussels for the Microphysiological Systems World Summit 2025. Great to see microbiology research in Norwich being shared with international audiences!

www.cmi-norwich.ac.uk/presenting-n...
Presenting new research at an international conference: using microphysiological systems (MPS) to study microbial infections
Dr Emily Jones visits Brussels to share her latest findings and network with researchers from around the world.
www.cmi-norwich.ac.uk
August 14, 2025 at 9:51 AM
Reposted by Rui Guan
📣 NEW PREPRINT 📝

We identified evolutionary origins of many fungal effectors!
We show that fungi secrete lots of antimicrobial proteins, and that some of them were repurposed by plant pathogens for host immune suppression.
www.biorxiv.org/content/10.1...

cc @teamthomma.bsky.social
Plant-associated fungi co-opt ancient antimicrobials for host manipulation
Evolutionary histories of effector proteins secreted by fungal pathogens to mediate plant colonization remain largely elusive. While most functionally characterized effectors modulate plant immunity, ...
www.biorxiv.org
August 15, 2025 at 7:47 AM