Karine ALAIN
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kalainxtremmicrob.bsky.social
Karine ALAIN
@kalainxtremmicrob.bsky.social
Research Director at the CNRS, fascinated by microbial physiology and its metabolic versatility, with particular interests in novel metabolic pathways, taxonomy, ecology, and geomicrobiology of microbiomes from extreme environments.
Reposted by Karine ALAIN
Interested in #archaea, #methane, #cell-envelopes?
New paper out @nature.com !
We discovered an enzyme that specifically cleaves the cell wall of methanogens, revealing a new chemical structure of archaeal peptidoglycan, 50 yrs after its first description
www.nature.com/articles/s41...
#MicroSky 🧵👇
www.nature.com
September 23, 2026 at 3:19 PM
Reposted by Karine ALAIN
Reposted by Karine ALAIN
Two new papers from our team! Both about #DeepSea #Bacteria living on #sulfur. By @kalainxtremmicrob.bsky.social

#Genomics of Desulfobulbaceae B35: www.sciencedirect.com/science/arti...

#Proteomics of Dissulfuribacter thermophilus: enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...
August 20, 2026 at 6:43 AM
Reposted by Karine ALAIN
Phylogenomic and metabolic insights into iron reduction metabolism in the genus Deferribacter belonging to the order Deferribacterales www.microbiologyresearch.org/content/jour... #jcampubs
May 20, 2026 at 2:46 PM
Reposted by Karine ALAIN
Beyond methanogenesis: expanding roles for methanogenic archaea: Trends in Microbiology https://www.cell.com/trends/microbiology/abstract/S0966-842X(26)00096-X?rss=yes
Beyond methanogenesis: expanding roles for methanogenic archaea
As key players in anoxic environments, methanogenic archaea account for the vast majority of biogenic methane emissions and play important roles during organic matter mineralization. Growing evidence indicates potential for broader ecological roles beyond methanogenesis. This review summarizes the physiology of biogeochemically relevant transformations of iron minerals, humic acid, biochar, and toxic heavy metals/metalloids. We examine how methanogenic archaea couple carbon cycling with other element cycles through methanogenic pathways and electron transfer processes. We also discuss known and potential molecular mechanisms that underlie these interactions. Furthermore, we highlight the discovery of the reversal of methanogenesis driven by extracellular electron transfer and its potential for methane bioconversion technologies. This work underscores the physiological versatility of methanogenic archaea, suggesting their diverse roles in biogeochemical cycles.
www.cell.com
May 2, 2026 at 12:28 PM
Reposted by Karine ALAIN
A family of ribosome hibernation factors widespread in Archaea www.nature.com/articles/s41... #jcampubs
April 27, 2026 at 4:05 PM
Reposted by Karine ALAIN
Breathing both ways: simultaneous aerobic–anaerobic respiration in microbes www.cell.com/trends/micro... #jcampubs
Breathing both ways: simultaneous aerobic–anaerobic respiration in microbes
Microorganisms have historically been classified as obligate aerobes or anaerobes, facultative anaerobes, or microaerophiles, reflecting differences in respiratory strategies dictated by the use of ox...
www.cell.com
April 11, 2026 at 11:23 PM
Reposted by Karine ALAIN
Very happy to share the latest paper of our group (et al.)! rdcu.be/e7zyX . This one has a special place… 1/n
Water mass specific genes dominate the Southern Ocean microbiome
Nature Communications - Southern Ocean microbial communities are less well studied. Here, the authors generate a circumpolar-scale gene catalog from 218 metagenomics samples revealing broadscale...
rdcu.be
March 10, 2026 at 7:45 PM
Reposted by Karine ALAIN
New paper from my 2nd PostDoc is now published in The ISME Journal by @isme-microbes.bsky.social!

#Sulfur disproportionation occurs globally across anoxic habitats & has multiple mechanisms of independent evolutionary origin academic.oup.com/ismej/advanc...

#Bacteria #Microbes #Evolution #DeepSea
March 2, 2026 at 1:12 PM
Reposted by Karine ALAIN
Sulfur disproportionation occurs globally across anoxic habitats and has multiple mechanisms of independent evolutionary origin academic.oup.com/ismej/advanc... #jcampubs
March 2, 2026 at 5:14 PM
Reposted by Karine ALAIN
We are hiring for group leaders again — EBI is a great place to start your research group!

embl.wd103.myworkdayjobs.com/EMBL/job/Hin...
Research Group Leader
Do you want to lead groundbreaking research in computational biology? Join us at EMBL-EBI! EMBL's European Bioinformatics Institute (EMBL-EBI) is seeking talented and highly-motivated scientists to jo...
embl.wd103.myworkdayjobs.com
January 30, 2026 at 9:02 AM
Reposted by Karine ALAIN
How the ocean’s hydrothermal systems made the first life on Earth possible
How the ocean’s hydrothermal systems made the first life on Earth possible
Researchers have discovered that chemical reactions in underwater hydrothermal vents could have produced the necessary ingredients for life on Earth.
theconversation.com
January 24, 2026 at 9:16 PM
Reposted by Karine ALAIN
Our latest. Led by the very talented @ahoiching.bsky.social

Cell cycle dysregulation of globally important SAR11 bacteria resulting from environmental perturbation www.nature.com/articles/s41... #jcampubs 🌊
Cell cycle dysregulation of globally important SAR11 bacteria resulting from environmental perturbation - Nature Microbiology
Without key cell cycle control genes, SAR11 cells experience aneuploidy and growth inhibition when exposed to changes in nutrients, carbon sources or temperature stress, a vulnerability that may repre...
www.nature.com
January 22, 2026 at 2:24 PM
Reposted by Karine ALAIN
Genomic adaptation strategies to habitat switching in Korarchaeota www.science.org/doi/full/10.... #jcampubs
Genomic adaptation strategies to habitat switching in Korarchaeota
The adaptation of Korarchaeota across changing habitats tracks their coevolution with Earth throughout its dynamic history.
www.science.org
January 12, 2026 at 4:17 PM
Reposted by Karine ALAIN
Now published in Nature Biotechnology:
go.nature.com/44P7nSm
If you missed it, the TL;DR is in my April thread below
January 6, 2026 at 9:38 AM
Reposted by Karine ALAIN
“Cultivation of Methanonezhaarchaeia, the third class of methanogens within the phylum Thermoproteota” by @kohtzarchaeota.bsky.social, Sylvia Nupp, and myself is out in Science Advances. 90% enriched culture of a methyl-dismutating thermoproteotal methanogen. #Microsky 🧪 tinyurl.com/bdcc3uzs
Cultivation of Methanonezhaarchaeia, the third class of methanogens within the phylum Thermoproteota
The cultivation of a group of methanogens illuminates their metabolic diversity and the evolution of archaea.
www.science.org
December 12, 2025 at 7:22 PM
Reposted by Karine ALAIN
Our study on ribonucleotides incorporation the genomes of Haloferax volcanii and Thermococcus barophilus is new published in #NAR #ribonucleasesH
academic.oup.com/nar/article/...
Validate User
academic.oup.com
November 22, 2025 at 11:01 AM
Reposted by Karine ALAIN
Congratulations @daanspeth.bsky.social and the whole team. GlobDB has already been very helpful for several projects at @cemess.bsky.social, and it will no doubt be a useful resource for many microbiologists around the world. Really glad to see it out there.
November 21, 2025 at 6:28 PM
Reposted by Karine ALAIN
We have a date for the free-to-attend #anvio workshop and ECR Symposium for 2026, and we look forward to meeting you at the @hifmb.de in Oldenburg, Germany!

Please find more information on the venue, program, and the application form here, and spread the word 😇

anvio.org/workshops/20...
November 20, 2025 at 6:42 PM
Reposted by Karine ALAIN
A new review study shows the invisible transport pathways for #iron through #hydrothermal plumes.
More on Iron’s Irony here ➡️ www.marum.de/en/Iron-sIro...
@icbm-uol.bsky.social #ConstructorUniversity @geomarkiel.bsky.social @awi.de @marumunibremen.bsky.social
October 20, 2025 at 11:51 AM
Reposted by Karine ALAIN
New article on equitable reuse of public sequencing data, published in @natmicrobiol.nature.com!
Led by the Data reuse core team @lhug.bsky.social @environmicrobio.bsky.social Cristina Moraru, @geomicrosoares.bsky.social, @folker.bsky.social and with Anke Heyer and The Data Reuse Consotrium!
September 26, 2025 at 7:34 PM
Reposted by Karine ALAIN
📢 New paper in @nature.com

Microbes rock 🎸🤘 with sulfide and iron minerals

I am very excited to share our recent study, which describes a previously unknown microbial energy metabolism ⚡⚡⚡🦠🧫⚡⚡⚡

🆕 Microbial iron oxide respiration coupled to sulfide oxidation - MISO

www.nature.com/articles/s41...
Microbial iron oxide respiration coupled to sulfide oxidation - Nature
Genomic and biochemical analyses of prokaryotic sulfur metabolism identify diverse microorganisms with the capacity to oxidize sulfide using iron(iii).
www.nature.com
August 27, 2025 at 8:17 PM
Reposted by Karine ALAIN
Phosphite oxidizers 🤝 Methanogens
In our new paper on “Lithosyntrophy” we show that phosphite oxidation drives methanogenesis through interspecies H2 transfer. Lithosyntrophy establishes a novel mechanistic link between the #phosphorus and carbon redox cycles
Lithosyntrophy: Obligate syntrophy in a phosphite-oxidizing, methanogenic culture https://www.biorxiv.org/content/10.1101/2025.08.26.672485v1
August 27, 2025 at 1:07 PM
Reposted by Karine ALAIN
also the HMM suite for an extensive array of sulfur enzymes is very handy (already used it!) ! :-)
August 28, 2025 at 11:15 AM