Marcel Bäcker
marcelbaecker.bsky.social
Marcel Bäcker
@marcelbaecker.bsky.social
Spatial structure and microbial communities
PhD student, Microverse Excellence Cluster Uni Jena
he/him
5/5 New tools help to close this gap. Individual-based models, microfluidics, hydrogels, and spatial omics allow insights into spatially structured communities. Spatial complexity is not noise; it is a signal! Embracing it is how we will learn the rules that govern microbial life.🔬
February 12, 2026 at 3:46 PM
4/5 Microscale interactions scale up to shape global biogeochemical cycles. Carbon flux, nutrient cycling, and viral lysis all depend on local spatial structure that many models simply average away. Connecting micro to macro is one of the biggest open challenges in the field!
February 12, 2026 at 3:46 PM
3/5 Natural microbiomes are fragmented: across soil pores, gut crypts, and marine particles. Subpopulations are dominated by drift and limited dispersal, which stabilizes cooperation and maintains diversity. Their tiny interactions scale up to biogeochemical processes, such as the ocean carbon flux.
February 12, 2026 at 3:46 PM
2/5 In biofilms, aggregates, and colonies on agar plates, internal gradients generate distinct metabolic subpopulations. Expansion into unoccupied space promotes stochasticity and shapes HGT. Even antibiotic resistance is spatial: beta-lactamases famously protect sensitive cells nearby.
February 12, 2026 at 3:46 PM
1/5 Microbial interactions happen over surprisingly short distances. Rapid metabolite uptake creates steep gradients that limit interaction ranges to just a few cell lengths. This shapes cross-feeding, quorum sensing, and Black Queen dynamics. Spatial range determines who interacts with whom.
February 12, 2026 at 3:46 PM