Erik Poppleton
@poppleton.phd
Postdoc working on RNA Nanotech & MD simulations @uniheidelberg.bsky.social & MPIP. GROMACS wrangler, oxDNA developer, @molpigs.bsky.social podcast host, and all around weird lil guy.
Has been known to post about music and neat bugs found in the woods.
Has been known to post about music and neat bugs found in the woods.
There is only one song powerful enough to make an entire generation start singing with just a single note.
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(Blank video, sound up)
May 11, 2026 at 11:21 AM
There is only one song powerful enough to make an entire generation start singing with just a single note.
(Blank video, sound up)
(Blank video, sound up)
I recently pushed an update to the #oxDNA to PDB converter which makes the backmapped structures work out-of-the-box with all-atom simulation tools (the previous version didn't correctly remove the phosphate from the 5' end). Here's a 2-minute demo on how to prepare an oxDNA structure for GROMACS! 🧬
October 28, 2025 at 10:21 AM
I recently pushed an update to the #oxDNA to PDB converter which makes the backmapped structures work out-of-the-box with all-atom simulation tools (the previous version didn't correctly remove the phosphate from the 5' end). Here's a 2-minute demo on how to prepare an oxDNA structure for GROMACS! 🧬