How confident are you in foundation model cell type annotations? This paper explores foundation model confidence scores and offers recalibrations methods especially in the context patient cohort annotations!

Congrats to Guangzheng Weng and @wonkj.bsky.social

www.biorxiv.org/content/10.6...

Excited to share our new approach to studying cell-cell interactions from #visium #spatial data — without relying on predefined ligand-receptor pairs. The method identifies genes influenced by CCI that were previously difficult to detect. Led by Hyobin.
www.biorxiv.org/content/10.6...

I envision how AI could fundamentally transform the way research is conducted. PersonaAI is an autonomous agent designed to mimic the workflow of a human researcher in hypothesis generation and validation. Thank the BioNexus team for collaboration.

lnkd.in/gqQ4Xmht.

From prompt engineering to agent engineering: expanding the AI toolbox with autonomous agentic AI collaborators for biomedical discovery biodatamining.biomedcentral.com/articles/10.... #artificialintelligence #agenticAI #agentengineering

Application period for the Cedars-Sinai PhD Program in Health AI is now OPEN! Come study cutting-edge AI in a top hospital with clinical rotations, clinical collaborators, & easy access to clinical data - please RP! www.cedars-sinai.edu/education/gr... #artificialintelligence #bioinformatics #phd

CellNeighborEX: deciphering neighbor‐dependent gene expression from spatial transcriptomics data | Molecular Systems Biology www.embopress.org/doi/full/10....

Vesalius 2.0 is in ‪‪@natcomms.nature.com‬ !

We show how using spatial context improves cell-to-cell mapping across heterogenous spatial samples.

Thanks to the reviewers, editors, and collaborators for making this possible.

GitHub: github.com/WonLab-CS/Ve...
Paper: www.nature.com/articles/s41...

A multi-scale, multi-context, and interpretable mapping strategy to map cells across space, time, and disease. @pcnmartin.bsky.social @wonkj.bsky.social

#spatialMapping #spatialOmics #BiotechNatureComms

www.nature.com/articles/s41...