#AlphaPeptDeep
🚀 #quantms 1.7.0 released (#Caracas)

MS2 transfer learning, #DeepLC, #MS2PIP, #AlphaPeptDeep, advanced rescoring, and onsite phosphorylation scoring are here! 🧵

> github.com/bigbio/quant...
> docs.quantms.org/en/latest/in...
> quantms.org/home

#quantms #proteomics #massspectrometry
Release 1.7.0 - Caracas · bigbio/quantms
What's Changed Increase dev version by @ypriverol in #579 fixing of bug in msstats_tmt.R (Issue: Error in the msstats_tmt.R function parse_contrasts #577) by @kai-lawsonmcdowall in #578 Pass corre...
github.com
January 9, 2026 at 2:42 PM
#quantms-rescoring received a major upgrade, making it more powerful and adaptable across datasets and acquisition strategies.

- MS2 transfer learning across instruments & setups (AlphaPeptDeep)
- Improved model #DeepLC and #MS2PIP handling & fixed rescoring ranges

#machinelearning #proteomics
January 9, 2026 at 2:42 PM