#BatchEffects
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trinobia.bsky.social
Your RNA-seq differential expression results might be cleaner than you think. Or messier.

The problem is you probably can't tell from the analysis alone. 🧵

Paper: academic.oup.com/bib/article/...

#Bioinformatics #RNAseq #BatchEffects #DifferentialExpression #DeepLearning #ComputationalBiology
USADAE: a deep learning approach to disentangle hidden covariates in RNA-seq data
Abstract. Integrative analysis of RNA-seq datasets faces critical challenges in disentangling biologically meaningful signals from implicit confounders, su
academic.oup.com
June 6, 2026 at 5:09 PM
mig-unimelb.bsky.social
📢 MIG Workshop: Managing batch effects in biological studies

🗓️ Thur, Jul 2 | ⏰ 9:30 am - 12:00 pm AEDT
📍 Online Event
🎙️ Dr. Eva Wang & Dr. David Hirst
💰 Booking fee fully refunded

#BatchEffects #OmicsData #MicrobiomeAnalysis #Reproducibility
MIG Workshop: Managing batch effects in biological studies
About the Event Batch effects refer to categorical sources of unwanted variation that can arise from biological, technical and computatio...
events.unimelb.edu.au
June 2, 2026 at 6:42 AM
haoyin.bsky.social
MultiNicheNet
"A multi-sample, multi-condition extension of NicheNet" Nature Methods 2020

Correcting for #BatchEffects & covariates to uncover cell-cell communication dynamics
github.com/saeyslab/mul...

Yvan Saeys lab bioRxiv 2023
www.biorxiv.org/content/10.1...
September 18, 2023 at 7:17 PM
trinobia.bsky.social
Covariate correction is easy to underestimate and expensive to get wrong. If you're working with bulk RNA-seq or multi-dataset integration, this is exactly the kind of problem we work on at Trinobia.

Reach out: trinobia.com/contact/

#Bioinformatics #RNAseq #BatchEffects #Trinobia
Contact - Trinobia
Ready to Move Your Data Forward? Let’s Discuss Your Research Project and Start Your Bioinformatics Collaboration Contact Us! Fast, tailored support for your
trinobia.com
June 6, 2026 at 5:09 PM
bigomics.bsky.social
Excited to announce that our article on the NPM method is now published in Bioinformatics! 🎉

NPM uses nearest pair matching to effectively correct #batcheffects and preserve true biological differences 💡

Learn more at doi.org/10.1093/bioi...

#bioinformatics #omicsdata #bigomics #omicsplayground
March 14, 2025 at 3:43 PM