Relatively niche problem, but worth discussing anyway. Reddit’s /r/bioinformatics doesn’t take posts about new tools or methods (?!?! again, WTAF), and /r/bioinformaticstools has measly throughput and community size. What do we do to address this problem? Cc @curiouscoding.nl @psy-fer.bsky.social
September 30, 2026 at 1:59 PM
Relatively niche problem, but worth discussing anyway. Reddit’s /r/bioinformatics doesn’t take posts about new tools or methods (?!?! again, WTAF), and /r/bioinformaticstools has measly throughput and community size. What do we do to address this problem? Cc @curiouscoding.nl @psy-fer.bsky.social
The mod decided it (IMO arbitrarily). The policy is also not enforced uniformly. Nonetheless, the mods point people at the meager bioinformaticstools as the proper place for such posts. IMO, this eliminates the most useful category of posts from r/bioinformatics
September 30, 2026 at 2:03 PM
The mod decided it (IMO arbitrarily). The policy is also not enforced uniformly. Nonetheless, the mods point people at the meager bioinformaticstools as the proper place for such posts. IMO, this eliminates the most useful category of posts from r/bioinformatics
Top 10 interview questions for PhD on fully funded scholarships
youtu.be/q1-zWCloIMw
asifmolbio.com
Dr. Asif’s Mol. Biology
#bioinformatics #learnbioinformatics #bioinformaticstraining #bioinformaticsskills #bioinformaticstools #dataanalysis #rnaseqdataanalysis #rnaseqdataanalysisusingr
youtu.be/q1-zWCloIMw
asifmolbio.com
Dr. Asif’s Mol. Biology
#bioinformatics #learnbioinformatics #bioinformaticstraining #bioinformaticsskills #bioinformaticstools #dataanalysis #rnaseqdataanalysis #rnaseqdataanalysisusingr
Top 10 interview questions for PhD on fully funded scholarships
YouTube video by Dr. Asif’s Mol. Biology
youtu.be
May 24, 2025 at 2:54 PM
Top 10 interview questions for PhD on fully funded scholarships
youtu.be/q1-zWCloIMw
asifmolbio.com
Dr. Asif’s Mol. Biology
#bioinformatics #learnbioinformatics #bioinformaticstraining #bioinformaticsskills #bioinformaticstools #dataanalysis #rnaseqdataanalysis #rnaseqdataanalysisusingr
youtu.be/q1-zWCloIMw
asifmolbio.com
Dr. Asif’s Mol. Biology
#bioinformatics #learnbioinformatics #bioinformaticstraining #bioinformaticsskills #bioinformaticstools #dataanalysis #rnaseqdataanalysis #rnaseqdataanalysisusingr
How to design a Graphical abstract? Pro-Tips
youtu.be/U13TRZlGPqQ
asifmolbio.com
Dr. Asif’s Mol. Biology
#bioinformatics #learnbioinformatics #bioinformaticstraining #bioinformaticsskills #bioinformaticstools #dataanalysis #rnaseqdataanalysis #rnaseqdataanalysisusingr #rnaseqdataanalysis
youtu.be/U13TRZlGPqQ
asifmolbio.com
Dr. Asif’s Mol. Biology
#bioinformatics #learnbioinformatics #bioinformaticstraining #bioinformaticsskills #bioinformaticstools #dataanalysis #rnaseqdataanalysis #rnaseqdataanalysisusingr #rnaseqdataanalysis
How to design a Graphical abstract? Pro-Tips
YouTube video by Dr. Asif’s Mol. Biology
youtu.be
May 22, 2025 at 7:24 AM
How to design a Graphical abstract? Pro-Tips
youtu.be/U13TRZlGPqQ
asifmolbio.com
Dr. Asif’s Mol. Biology
#bioinformatics #learnbioinformatics #bioinformaticstraining #bioinformaticsskills #bioinformaticstools #dataanalysis #rnaseqdataanalysis #rnaseqdataanalysisusingr #rnaseqdataanalysis
youtu.be/U13TRZlGPqQ
asifmolbio.com
Dr. Asif’s Mol. Biology
#bioinformatics #learnbioinformatics #bioinformaticstraining #bioinformaticsskills #bioinformaticstools #dataanalysis #rnaseqdataanalysis #rnaseqdataanalysisusingr #rnaseqdataanalysis
I think (and hope) that r/bioinformaticstools (started by @psy-fer.bsky.social, I believe) will become an increasingly popular and useful community where much of engaging discussion around new tools that previously took place on r/bioinformatics can again take place!
This dismissal of community discussion in the r/bioinformatics community does not sit well with me.
I (disagree with, but) understand policies related to not allowing self-promotion. However, disallowing tool posts all together, and applying the policy inconsistently, feels wrong.
I (disagree with, but) understand policies related to not allowing self-promotion. However, disallowing tool posts all together, and applying the policy inconsistently, feels wrong.
June 4, 2026 at 2:36 PM
I think (and hope) that r/bioinformaticstools (started by @psy-fer.bsky.social, I believe) will become an increasingly popular and useful community where much of engaging discussion around new tools that previously took place on r/bioinformatics can again take place!
#eXmoor #eXmoorPharma #AnthonyNolan #celltherapydevelopment #celltherapy #AnthonyNolanCellTherapyandLaboratoryServices #AnthonyNolanCTandLS #autologouscelltherapy #allogeneiccelltherapy #clinicalgrademanufacturing #bioinformaticstools #cordbloodprogramme
pharmatimes.com/news/exmoor-...
pharmatimes.com/news/exmoor-...
eXmoor and Anthony Nolan partner to streamline cell therapy development - PharmaTimes
Collaboration offers end-to-end support from donor sourcing to manufacturing
pharmatimes.com
September 3, 2025 at 10:51 AM
🚀 Unlock top bioinformatics tools like BLAST, Galaxy & Biopython! Master life sciences analysis with BioResire. Enroll now! 🔬💻 www.bioresire.in
#BioinformaticsTools #BioResire #Bioinformatics #BLAST #Galaxy #Biopython #BiotechEducation #BioinformaticsTraining #LifeSciences #NGS #Genomics
#BioinformaticsTools #BioResire #Bioinformatics #BLAST #Galaxy #Biopython #BiotechEducation #BioinformaticsTraining #LifeSciences #NGS #Genomics
January 12, 2026 at 3:35 AM
🚀 Unlock top bioinformatics tools like BLAST, Galaxy & Biopython! Master life sciences analysis with BioResire. Enroll now! 🔬💻 www.bioresire.in
#BioinformaticsTools #BioResire #Bioinformatics #BLAST #Galaxy #Biopython #BiotechEducation #BioinformaticsTraining #LifeSciences #NGS #Genomics
#BioinformaticsTools #BioResire #Bioinformatics #BLAST #Galaxy #Biopython #BiotechEducation #BioinformaticsTraining #LifeSciences #NGS #Genomics
Targeted decontamination of #SequencingData with the #CLEANtool enhances viral #genome analysis accuracy #VirusBioinformatics #BioinformaticsTools #DataQualityControl 🧬🔬
📄https://doi.org/10.1093/nargab/lqaf105
👤EVBC: Marie Lataretu, Sebastian Krautwurst, Mike Marquet, Adrian Viehweger, Martin Hölzer
📄https://doi.org/10.1093/nargab/lqaf105
👤EVBC: Marie Lataretu, Sebastian Krautwurst, Mike Marquet, Adrian Viehweger, Martin Hölzer
doi.org
September 22, 2025 at 2:51 PM
Targeted decontamination of #SequencingData with the #CLEANtool enhances viral #genome analysis accuracy #VirusBioinformatics #BioinformaticsTools #DataQualityControl 🧬🔬
📄https://doi.org/10.1093/nargab/lqaf105
👤EVBC: Marie Lataretu, Sebastian Krautwurst, Mike Marquet, Adrian Viehweger, Martin Hölzer
📄https://doi.org/10.1093/nargab/lqaf105
👤EVBC: Marie Lataretu, Sebastian Krautwurst, Mike Marquet, Adrian Viehweger, Martin Hölzer
They benchmark multiple Dorado versions using controls many workflows still skip.
In vitro transcribed RNA, METTL3 inhibition, and side by side GLORI on the same RNA.
This is the baseline many studies lack.
#RNAmodifications #m6Aseq #PeerReview #GenomicsResearch #BioinformaticsTools
In vitro transcribed RNA, METTL3 inhibition, and side by side GLORI on the same RNA.
This is the baseline many studies lack.
#RNAmodifications #m6Aseq #PeerReview #GenomicsResearch #BioinformaticsTools
Calibrated analysis framework for nanopore direct RNA sequencing uncovers cell-specific m6A stoichiometry at conserved sites
elifesciences.org
May 13, 2026 at 6:04 PM
They benchmark multiple Dorado versions using controls many workflows still skip.
In vitro transcribed RNA, METTL3 inhibition, and side by side GLORI on the same RNA.
This is the baseline many studies lack.
#RNAmodifications #m6Aseq #PeerReview #GenomicsResearch #BioinformaticsTools
In vitro transcribed RNA, METTL3 inhibition, and side by side GLORI on the same RNA.
This is the baseline many studies lack.
#RNAmodifications #m6Aseq #PeerReview #GenomicsResearch #BioinformaticsTools
Here are step by step instructions I recently made on how to build a 64 bit Windows exe of SAMTOOLS on a Windows PC.
I am currently busy integrating it into the Visual Genome Browser.
#bioinformatics
#bioinformaticstools
#samtools
#genomics
splicejunction.blogspot.com/2025/01/how-...
I am currently busy integrating it into the Visual Genome Browser.
#bioinformatics
#bioinformaticstools
#samtools
#genomics
splicejunction.blogspot.com/2025/01/how-...
How to build SAMTOOLS on a Windows PC
How to compile SAMTOOLS.exe as a 64 bit executable for windows PCs.
splicejunction.blogspot.com
January 2, 2025 at 2:42 AM
Here are step by step instructions I recently made on how to build a 64 bit Windows exe of SAMTOOLS on a Windows PC.
I am currently busy integrating it into the Visual Genome Browser.
#bioinformatics
#bioinformaticstools
#samtools
#genomics
splicejunction.blogspot.com/2025/01/how-...
I am currently busy integrating it into the Visual Genome Browser.
#bioinformatics
#bioinformaticstools
#samtools
#genomics
splicejunction.blogspot.com/2025/01/how-...
🌐 ShinyTHOR is freely available for non-commercial use.
Access the web app at https://alexismurillo.shinyapps.io/ShinyThor and explore the source code on GitHub: https://github.com/Murillo22/ShinyThor
#OpenScience #CancerGenomics #BioinformaticsTools
Access the web app at https://alexismurillo.shinyapps.io/ShinyThor and explore the source code on GitHub: https://github.com/Murillo22/ShinyThor
#OpenScience #CancerGenomics #BioinformaticsTools
GitHub - Murillo22/ShinyThor: We developed ShinyThor, a web app intended to offer multi-omic (transcriptomic, metabolomic, proteomic, and miRNomic) and drug-related data intuitively and dynamically to help researchers find relevant analytes. This app uses data from the Cancer Cell Line Encyclopedia (CCLE), miRTarBase, circInteractome, and Genomics of Drug Sensitivity in Cancer.
We developed ShinyThor, a web app intended to offer multi-omic (transcriptomic, metabolomic, proteomic, and miRNomic) and drug-related data intuitively and dynamically to help researchers find rele...
github.com
April 4, 2025 at 12:02 PM
🌐 ShinyTHOR is freely available for non-commercial use.
Access the web app at https://alexismurillo.shinyapps.io/ShinyThor and explore the source code on GitHub: https://github.com/Murillo22/ShinyThor
#OpenScience #CancerGenomics #BioinformaticsTools
Access the web app at https://alexismurillo.shinyapps.io/ShinyThor and explore the source code on GitHub: https://github.com/Murillo22/ShinyThor
#OpenScience #CancerGenomics #BioinformaticsTools
🌐 ImpLiMet, a user-friendly RShiny app, is freely available for imputing missing data w/ 8 methods & optimization features. Explore it online (https://complimet.ca/shiny/implimet/) or on GitHub (https://github.com/complimet/ImpLiMet)
#OpenScience #DataAnalysis #BioinformaticsTools
#OpenScience #DataAnalysis #BioinformaticsTools
GitHub - complimet/implimet: Imputation for Lipidomics and Metabolomics
Imputation for Lipidomics and Metabolomics. Contribute to complimet/implimet development by creating an account on GitHub.
github.com
January 29, 2025 at 4:02 PM
🌐 ImpLiMet, a user-friendly RShiny app, is freely available for imputing missing data w/ 8 methods & optimization features. Explore it online (https://complimet.ca/shiny/implimet/) or on GitHub (https://github.com/complimet/ImpLiMet)
#OpenScience #DataAnalysis #BioinformaticsTools
#OpenScience #DataAnalysis #BioinformaticsTools
🛠️ VAREANT is open-source and available on GitHub! Its modular design supports multi-platform use, large datasets, and efficient genomic data preparation.
Explore it here: https://github.com/drzeeshanahmed/Gene_VAREANT
#OpenScience #DataAnalysis #BioinformaticsTools
Explore it here: https://github.com/drzeeshanahmed/Gene_VAREANT
#OpenScience #DataAnalysis #BioinformaticsTools
GitHub - drzeeshanahmed/Gene_VAREANT
Contribute to drzeeshanahmed/Gene_VAREANT development by creating an account on GitHub.
github.com
January 16, 2025 at 12:16 PM
🛠️ VAREANT is open-source and available on GitHub! Its modular design supports multi-platform use, large datasets, and efficient genomic data preparation.
Explore it here: https://github.com/drzeeshanahmed/Gene_VAREANT
#OpenScience #DataAnalysis #BioinformaticsTools
Explore it here: https://github.com/drzeeshanahmed/Gene_VAREANT
#OpenScience #DataAnalysis #BioinformaticsTools
🔧 MicroKPNN-MT, a multitask learning framework for microbiome-based disease prediction and metadata inference, is available on GitHub: github.com/mgtools/Micr... #OpenSource #AIinHealthcare #BioinformaticsTools
GitHub - mgtools/MicroKPNN-MT: Multi-task microbiome-based knowledge-primed neural network
Multi-task microbiome-based knowledge-primed neural network - mgtools/MicroKPNN-MT
github.com
January 8, 2025 at 9:26 PM
🔧 MicroKPNN-MT, a multitask learning framework for microbiome-based disease prediction and metadata inference, is available on GitHub: github.com/mgtools/Micr... #OpenSource #AIinHealthcare #BioinformaticsTools
If you'd like to explore the epiTCR-KDA tool, enabling researchers to explore TCR-peptide binding prediction, you can access the code here: github.com/ddiem-ri-4D/...
#OpenSource #BioinformaticsTools #TCRPrediction
#OpenSource #BioinformaticsTools #TCRPrediction
GitHub - ddiem-ri-4D/epiTCR-KDA: epiTCR-KDA: Knowledge Distillation model on Dihedral Angles for TCR-peptide prediction
epiTCR-KDA: Knowledge Distillation model on Dihedral Angles for TCR-peptide prediction - ddiem-ri-4D/epiTCR-KDA
github.com
January 3, 2025 at 2:55 PM
If you'd like to explore the epiTCR-KDA tool, enabling researchers to explore TCR-peptide binding prediction, you can access the code here: github.com/ddiem-ri-4D/...
#OpenSource #BioinformaticsTools #TCRPrediction
#OpenSource #BioinformaticsTools #TCRPrediction
PLUS: 🖥️ The Protomix Python package for 1H-NMR data preprocessing is now available! It supports signal processing, interactive visualization, and streamlined workflows. Access it here: github.com/mzniber/Prot... #OpenSource #DataScience #BioinformaticsTools
GitHub - mzniber/Protomix
Contribute to mzniber/Protomix development by creating an account on GitHub.
github.com
January 2, 2025 at 2:59 PM
PLUS: 🖥️ The Protomix Python package for 1H-NMR data preprocessing is now available! It supports signal processing, interactive visualization, and streamlined workflows. Access it here: github.com/mzniber/Prot... #OpenSource #DataScience #BioinformaticsTools
🛠️ Access the experimental code for investigating #AlphaFold2’s structural predictions and new methods added to the OpenFold project. Available here: github.com/ibmm-unibe-c... #OpenScience #BioinformaticsTools
GitHub - ibmm-unibe-ch/template-analysis
Contribute to ibmm-unibe-ch/template-analysis development by creating an account on GitHub.
github.com
December 19, 2024 at 10:00 PM
🛠️ Access the experimental code for investigating #AlphaFold2’s structural predictions and new methods added to the OpenFold project. Available here: github.com/ibmm-unibe-c... #OpenScience #BioinformaticsTools
🔧 Interested in the ICoN software? It's available for integrating protein-protein association networks using co-attention and denoising techniques.
Access it here: github.com/Murali-group...
#OpenScience #BioinformaticsTools #NetworkIntegration
Access it here: github.com/Murali-group...
#OpenScience #BioinformaticsTools #NetworkIntegration
GitHub - Murali-group/ICoN: Integration using Co-attention across Biological Networks
Integration using Co-attention across Biological Networks - Murali-group/ICoN
github.com
December 16, 2024 at 8:21 PM
🔧 Interested in the ICoN software? It's available for integrating protein-protein association networks using co-attention and denoising techniques.
Access it here: github.com/Murali-group...
#OpenScience #BioinformaticsTools #NetworkIntegration
Access it here: github.com/Murali-group...
#OpenScience #BioinformaticsTools #NetworkIntegration
🔍 Unlock efficient sequence length analysis with SeqLengthPlot v2.0. This Python-based tool offers flexible cutoffs and visualization options.
Get it here: github.com/danydguezper...
#BioinformaticsTools #DataVisualization #OpenScience
Get it here: github.com/danydguezper...
#BioinformaticsTools #DataVisualization #OpenScience
Release SeqLengthPlot v2.0.2 – Refined Command-line Experience with --cutoff Flag Update, output label fixed · danydguezperez/SeqLengthPlot
SeqLengthPlot v2.0.2: An All-in-One, Easy-to-Use Tool for Visualizing and Retrieving Sequence Lengths from FASTA Files
SeqLengthPlot is an all-in-one, easy-to-use Python-based tool for visualizing ...
github.com
December 10, 2024 at 10:00 PM
🔍 Unlock efficient sequence length analysis with SeqLengthPlot v2.0. This Python-based tool offers flexible cutoffs and visualization options.
Get it here: github.com/danydguezper...
#BioinformaticsTools #DataVisualization #OpenScience
Get it here: github.com/danydguezper...
#BioinformaticsTools #DataVisualization #OpenScience
Just gave a seminar for the Master in Bioinformatics program at @uam.es sharing our work on ImP in #CVD and new #bioinformaticstools for #metabolomics data. It is always rewarding to share science with future researchers!
October 3, 2025 at 4:11 PM
Just gave a seminar for the Master in Bioinformatics program at @uam.es sharing our work on ImP in #CVD and new #bioinformaticstools for #metabolomics data. It is always rewarding to share science with future researchers!