Snakemake is a python extension for writing workflows. Genomics data processing usually requires bundling many different tools to reach a stage that is ready for downstream analysis. I have been using snakemake writing workflows for various genomic and epigenomic datasets. pyflow-ChIP-seq DNA-seq pyflow-RNA-seq pyflow-ATAC-seq pyflow-RRBSeq pyflow-cellranger pyflow-scATACseq The DNAseq Snakemake pipeline is the most complicated workflow I have written so far. I will need to think about refining it, modulizing it and adding conda env support.

Snakemake is a python extension for writing workflows. Genomics data processing usually requires bundling many different tools to reach a stage that is ready for downstream analysis. I have been using snakemake writing workflows for various genomic and epigenomic datasets. pyflow-ChIP-seq DNA-seq pyflow-RNA-seq pyflow-ATAC-seq pyflow-RRBSeq pyflow-cellranger pyflow-scATACseq The DNAseq Snakemake pipeline is the most complicated workflow I have written so far. I will need to think about refining it, modulizing it and adding conda env support.

Snakemake is a python extension for writing workflows. Genomics data processing usually requires bundling many different tools to reach a stage that is ready for downstream analysis. I have been using snakemake writing workflows for various genomic and epigenomic datasets. pyflow-ChIP-seq DNA-seq pyflow-RNA-seq pyflow-ATAC-seq pyflow-RRBSeq pyflow-cellranger pyflow-scATACseq The DNAseq Snakemake pipeline is the most complicated workflow I have written so far. I will need to think about refining it, modulizing it and adding conda env support.