the original #DeepLabCut paper has hit over 4K citations! www.nature.com/articles/s41...
Wow! 🙏🏼🥳🙏🏼🥳🙏🏼
@deeplabcut.bsky.social
Wow! 🙏🏼🥳🙏🏼🥳🙏🏼
@deeplabcut.bsky.social
December 4, 2024 at 11:41 PM
the original #DeepLabCut paper has hit over 4K citations! www.nature.com/articles/s41...
Wow! 🙏🏼🥳🙏🏼🥳🙏🏼
@deeplabcut.bsky.social
Wow! 🙏🏼🥳🙏🏼🥳🙏🏼
@deeplabcut.bsky.social
👋 Heyyy bluesky 💙💜we made it
follow us for updates on DeepLabCut 👩🏻🔬🧠🧪…
💜Home Page: deeplabcut.org
📚Docs: https://deeplabcut.github.io/DeepLabCut/README.html
🛠️ Install: pip install 'deeplabcut[gui,tf]'
🐿 Model Zoo: modelzoo.deeplabcut.org
👩🏾💻👨💻 DeepLabCut AI Residency: deeplabcutairesidency.org
follow us for updates on DeepLabCut 👩🏻🔬🧠🧪…
💜Home Page: deeplabcut.org
📚Docs: https://deeplabcut.github.io/DeepLabCut/README.html
🛠️ Install: pip install 'deeplabcut[gui,tf]'
🐿 Model Zoo: modelzoo.deeplabcut.org
👩🏾💻👨💻 DeepLabCut AI Residency: deeplabcutairesidency.org
September 18, 2023 at 7:28 PM
👋 Heyyy bluesky 💙💜we made it
follow us for updates on DeepLabCut 👩🏻🔬🧠🧪…
💜Home Page: deeplabcut.org
📚Docs: https://deeplabcut.github.io/DeepLabCut/README.html
🛠️ Install: pip install 'deeplabcut[gui,tf]'
🐿 Model Zoo: modelzoo.deeplabcut.org
👩🏾💻👨💻 DeepLabCut AI Residency: deeplabcutairesidency.org
follow us for updates on DeepLabCut 👩🏻🔬🧠🧪…
💜Home Page: deeplabcut.org
📚Docs: https://deeplabcut.github.io/DeepLabCut/README.html
🛠️ Install: pip install 'deeplabcut[gui,tf]'
🐿 Model Zoo: modelzoo.deeplabcut.org
👩🏾💻👨💻 DeepLabCut AI Residency: deeplabcutairesidency.org
DeepLabCut pose estimation (@trackingactions.bsky.social) revealed high intitial motor variability, which is essenatial for motor learning (Dhawale et al., 2017, Annu. Rev. Neurosci.).
September 11, 2025 at 10:15 AM
DeepLabCut pose estimation (@trackingactions.bsky.social) revealed high intitial motor variability, which is essenatial for motor learning (Dhawale et al., 2017, Annu. Rev. Neurosci.).
If you’re at SfN, see the poster on DeepLabCut 3 where n Monday 8-12
Swing by to talk to @trackingactions.bsky.social and me this and about the DLC ecosystem!
Swing by to talk to @trackingactions.bsky.social and me this and about the DLC ecosystem!
AI tools like DeepLabCut and SuperAnimal are changing how scientists study movement, helping them understand how brain activity drives behavior.
Read more: bit.ly/4qnX7JF
@trackingactions.bsky.social @deeplabcut.bsky.social
Read more: bit.ly/4qnX7JF
@trackingactions.bsky.social @deeplabcut.bsky.social
How AI Is Changing Neuroscience Discovery
AI is altering how scientists study the brain
bit.ly
November 15, 2025 at 11:50 AM
If you’re at SfN, see the poster on DeepLabCut 3 where n Monday 8-12
Swing by to talk to @trackingactions.bsky.social and me this and about the DLC ecosystem!
Swing by to talk to @trackingactions.bsky.social and me this and about the DLC ecosystem!
Summer Workshop Alert‼️
The Okinawa Institute of Science and Technology, Japan organizes on July 1 a hands-on DeepLabCut workshop led by Drs. Mackenzie and Alexander Mathis.
Applications are open at www.oist.jp/conference/d...
The Okinawa Institute of Science and Technology, Japan organizes on July 1 a hands-on DeepLabCut workshop led by Drs. Mackenzie and Alexander Mathis.
Applications are open at www.oist.jp/conference/d...
DeepLabCut Workshop
A one day hands-on workshop on the use of the famous DeepLabCut software to analyze videos of animal behavior, led by Drs. Mackenzie and Alexander Mathis. Participants will be helped to pre-install th...
www.oist.jp
May 13, 2025 at 8:53 AM
Summer Workshop Alert‼️
The Okinawa Institute of Science and Technology, Japan organizes on July 1 a hands-on DeepLabCut workshop led by Drs. Mackenzie and Alexander Mathis.
Applications are open at www.oist.jp/conference/d...
The Okinawa Institute of Science and Technology, Japan organizes on July 1 a hands-on DeepLabCut workshop led by Drs. Mackenzie and Alexander Mathis.
Applications are open at www.oist.jp/conference/d...
Our analysis of the rotational movement of Chlamydomonas uniflagellar mutant using #DeepLabCut has just been published in microPublication Biology!
micropublication.org/journals/bio...
micropublication.org/journals/bio...
Revealing Rotational Characteristics of the Uniflagellate Mutant of Chlamydomonas reinhardtii through DeepLabCut-Based Autotracking | microPublication
micropublication.org
April 22, 2025 at 12:00 PM
Our analysis of the rotational movement of Chlamydomonas uniflagellar mutant using #DeepLabCut has just been published in microPublication Biology!
micropublication.org/journals/bio...
micropublication.org/journals/bio...
AI tools like DeepLabCut and SuperAnimal are changing how scientists study movement, helping them understand how brain activity drives behavior.
Read more: bit.ly/4qnX7JF
@trackingactions.bsky.social @deeplabcut.bsky.social
Read more: bit.ly/4qnX7JF
@trackingactions.bsky.social @deeplabcut.bsky.social
How AI Is Changing Neuroscience Discovery
AI is altering how scientists study the brain
bit.ly
November 1, 2025 at 12:07 AM
AI tools like DeepLabCut and SuperAnimal are changing how scientists study movement, helping them understand how brain activity drives behavior.
Read more: bit.ly/4qnX7JF
@trackingactions.bsky.social @deeplabcut.bsky.social
Read more: bit.ly/4qnX7JF
@trackingactions.bsky.social @deeplabcut.bsky.social
Good morning Bluesky, time to absolutely slay this week before vacation 👀🚀— pushing hard on revisions … #deeplabcut #SuperAnimal
July 31, 2023 at 6:47 AM
Good morning Bluesky, time to absolutely slay this week before vacation 👀🚀— pushing hard on revisions … #deeplabcut #SuperAnimal
A little intro (again!) ⬇️ in short, my lab studies biological intelligence (BI) and builds BI inspired adaptive AI, including developing tools like DeepLabCut, CEBRA and AmadeusGPT ✨🏔️💙
👋! I’m a neuroscientist who works on building top performing machine vision & learning models 🤖 and trying to build more natural AI by studying how mice learn to play video games 🕹️🎮.
Please share/follow me if you’d like to hear more of that content 🤗
Please share/follow me if you’d like to hear more of that content 🤗
November 10, 2024 at 9:34 PM
A little intro (again!) ⬇️ in short, my lab studies biological intelligence (BI) and builds BI inspired adaptive AI, including developing tools like DeepLabCut, CEBRA and AmadeusGPT ✨🏔️💙
Super thrilled to give a full day #DeepLabCut Workshop in Okinawa today!
We had a packed house and everyone got models trained 🚀 - even then used #CEBRA 🦓 and/or #DLC2Action on the outputs!
Thank you #OIST for hosting us!! 🥳
We had a packed house and everyone got models trained 🚀 - even then used #CEBRA 🦓 and/or #DLC2Action on the outputs!
Thank you #OIST for hosting us!! 🥳
July 1, 2025 at 9:46 AM
Super thrilled to give a full day #DeepLabCut Workshop in Okinawa today!
We had a packed house and everyone got models trained 🚀 - even then used #CEBRA 🦓 and/or #DLC2Action on the outputs!
Thank you #OIST for hosting us!! 🥳
We had a packed house and everyone got models trained 🚀 - even then used #CEBRA 🦓 and/or #DLC2Action on the outputs!
Thank you #OIST for hosting us!! 🥳
Happy New Year! We will start posting much more on bluesky now 🎉 -- stay tuned for new features, tips, updates, and 2025 in-person workshop announcements!
www.deeplabcut.org
www.deeplabcut.org
DeepLabCut — The Mathis Lab of Adaptive Intelligence
www.deeplabcut.org
January 10, 2025 at 11:53 AM
Happy New Year! We will start posting much more on bluesky now 🎉 -- stay tuned for new features, tips, updates, and 2025 in-person workshop announcements!
www.deeplabcut.org
www.deeplabcut.org
Happy Saturday!
Check out our latest docs, with lots of new additions to explain #DLC3 (which is backwards compatible, so no fear, update!). Here is a quick start guide ⬇️
Full link to install docs: deeplabcut.github.io/DeepLabCut/d...
SOTA model Guide🔥: deeplabcut.github.io/DeepLabCut/d...
Check out our latest docs, with lots of new additions to explain #DLC3 (which is backwards compatible, so no fear, update!). Here is a quick start guide ⬇️
Full link to install docs: deeplabcut.github.io/DeepLabCut/d...
SOTA model Guide🔥: deeplabcut.github.io/DeepLabCut/d...
June 21, 2025 at 10:24 AM
Happy Saturday!
Check out our latest docs, with lots of new additions to explain #DLC3 (which is backwards compatible, so no fear, update!). Here is a quick start guide ⬇️
Full link to install docs: deeplabcut.github.io/DeepLabCut/d...
SOTA model Guide🔥: deeplabcut.github.io/DeepLabCut/d...
Check out our latest docs, with lots of new additions to explain #DLC3 (which is backwards compatible, so no fear, update!). Here is a quick start guide ⬇️
Full link to install docs: deeplabcut.github.io/DeepLabCut/d...
SOTA model Guide🔥: deeplabcut.github.io/DeepLabCut/d...
Our dear @mguidotti29.bsky.social presenting his fab work on how to infer bird orientation behaviour from videos using DeepLabCut at #ECBB2026 💪
#ECBB2026 still in Sensory landscapes in the Anthropocene and we hear all about electrosmog on orientation behaviour and migratory restlessness in songbirds from Matteo Guidotti!
September 2, 2026 at 11:38 AM
Our dear @mguidotti29.bsky.social presenting his fab work on how to infer bird orientation behaviour from videos using DeepLabCut at #ECBB2026 💪
It's time for the second workshop this autumn - this time, you will have an opportunity to learn animal pose estimation with Deeplabcut! Workshop will be held Nov 20-21st in Heidelberg and is free of charge. More info on our webpage!
October 22, 2025 at 1:40 PM
It's time for the second workshop this autumn - this time, you will have an opportunity to learn animal pose estimation with Deeplabcut! Workshop will be held Nov 20-21st in Heidelberg and is free of charge. More info on our webpage!
🥹 my first two senior author papers now each have 1K citations.
#DeepLabCut proper (my first lab paper ❤️) and now the user guide for 3D DeepLabCut!
Deeply humbling to reflect on the start of my lab and the people who took a risk to work very hard with me in those early years … 🥼 🧠
#est2017
#DeepLabCut proper (my first lab paper ❤️) and now the user guide for 3D DeepLabCut!
Deeply humbling to reflect on the start of my lab and the people who took a risk to work very hard with me in those early years … 🥼 🧠
#est2017
June 6, 2024 at 7:58 PM
🥹 my first two senior author papers now each have 1K citations.
#DeepLabCut proper (my first lab paper ❤️) and now the user guide for 3D DeepLabCut!
Deeply humbling to reflect on the start of my lab and the people who took a risk to work very hard with me in those early years … 🥼 🧠
#est2017
#DeepLabCut proper (my first lab paper ❤️) and now the user guide for 3D DeepLabCut!
Deeply humbling to reflect on the start of my lab and the people who took a risk to work very hard with me in those early years … 🥼 🧠
#est2017
#DLCProTip: Did you know you can use unsupervised learning to adapt a trained model on the fly to your video in DeepLabCut!?
When you run video analysis, check out “video adaptation” - it reduces jitter and provides better poses! ⬇️
www.nature.com/articles/s41...
When you run video analysis, check out “video adaptation” - it reduces jitter and provides better poses! ⬇️
www.nature.com/articles/s41...
May 13, 2025 at 8:57 AM
#DLCProTip: Did you know you can use unsupervised learning to adapt a trained model on the fly to your video in DeepLabCut!?
When you run video analysis, check out “video adaptation” - it reduces jitter and provides better poses! ⬇️
www.nature.com/articles/s41...
When you run video analysis, check out “video adaptation” - it reduces jitter and provides better poses! ⬇️
www.nature.com/articles/s41...
New paper out in Animal Cognition: bumblebee social learning, Lego, and DeepLabCut 🙂 link.springer.com/article/10.1...
Bumblebee social learning outcomes correlate with their flower-facing behaviour - Animal Cognition
Previous studies suggest that social learning in bumblebees can occur through second-order conditioning, with conspecifics functioning as first-order reinforcers. However, the behavioural mechanisms u...
link.springer.com
November 27, 2024 at 10:30 AM
New paper out in Animal Cognition: bumblebee social learning, Lego, and DeepLabCut 🙂 link.springer.com/article/10.1...
✨ We are super thrilled to announce the #DeepLabCut AI Residents for 2025!
They are hosting workshops around the 🌎 this winter/summer 🇲🇽🇦🇷🇨🇦🇪🇸: deeplabcutairesidency.org/our-team
Meet Alejandro, Juliana, Sabrina, Jiayue & Marc!
Many thanks to @kavlifoundation.org for their support!
They are hosting workshops around the 🌎 this winter/summer 🇲🇽🇦🇷🇨🇦🇪🇸: deeplabcutairesidency.org/our-team
Meet Alejandro, Juliana, Sabrina, Jiayue & Marc!
Many thanks to @kavlifoundation.org for their support!
June 2, 2025 at 1:28 PM
✨ We are super thrilled to announce the #DeepLabCut AI Residents for 2025!
They are hosting workshops around the 🌎 this winter/summer 🇲🇽🇦🇷🇨🇦🇪🇸: deeplabcutairesidency.org/our-team
Meet Alejandro, Juliana, Sabrina, Jiayue & Marc!
Many thanks to @kavlifoundation.org for their support!
They are hosting workshops around the 🌎 this winter/summer 🇲🇽🇦🇷🇨🇦🇪🇸: deeplabcutairesidency.org/our-team
Meet Alejandro, Juliana, Sabrina, Jiayue & Marc!
Many thanks to @kavlifoundation.org for their support!
I love this pic (of @trackingskills.bsky.social and I) so much that when @natureportfolio.bsky.social asked for a pic of us for the wonderful profile they published this year, I could not resist… 💙https://www.nature.com/articles/d41586-024-01474-x
December 6, 2024 at 2:07 PM
I love this pic (of @trackingskills.bsky.social and I) so much that when @natureportfolio.bsky.social asked for a pic of us for the wonderful profile they published this year, I could not resist… 💙https://www.nature.com/articles/d41586-024-01474-x
refineDLC: an advanced post-processing pipeline for DeepLabCut outputs https://www.biorxiv.org/content/10.1101/2025.04.09.648046v1
April 15, 2025 at 11:51 PM
refineDLC: an advanced post-processing pipeline for DeepLabCut outputs https://www.biorxiv.org/content/10.1101/2025.04.09.648046v1
We are pleased to announce our first workshop in Portugal, which will guide you step by step through the process of pose estimation and unsupervised behavior analysis, focusing on two powerful tools: DeepLabCut and Keypoint-MoSeq!
@deeplabcut.bsky.social
@deeplabcut.bsky.social
July 31, 2025 at 12:22 PM
We are pleased to announce our first workshop in Portugal, which will guide you step by step through the process of pose estimation and unsupervised behavior analysis, focusing on two powerful tools: DeepLabCut and Keypoint-MoSeq!
@deeplabcut.bsky.social
@deeplabcut.bsky.social
🚀 movement—our free, open-source Python package for analysing animal motion—just got an upgrade (v0.0.21).
movement offers a modular, consistent interface for processing motion tracks from tools like DeepLabCut and SLEAP.
Check it out: movement.neuroinformatics.dev
movement offers a modular, consistent interface for processing motion tracks from tools like DeepLabCut and SLEAP.
Check it out: movement.neuroinformatics.dev
December 9, 2024 at 7:07 PM
🚀 movement—our free, open-source Python package for analysing animal motion—just got an upgrade (v0.0.21).
movement offers a modular, consistent interface for processing motion tracks from tools like DeepLabCut and SLEAP.
Check it out: movement.neuroinformatics.dev
movement offers a modular, consistent interface for processing motion tracks from tools like DeepLabCut and SLEAP.
Check it out: movement.neuroinformatics.dev
📢 Applications are open for the “Open Science in Practice” Summer School!
A week of talks + hands-on workshops on open science, electronics, 3D printing, and DeepLabCut for students & early-career researchers.
📍Homerton College, Cambridge (UK)
📅 Apply by 9 June 2026
🔗https://cambridgeopenlab.org/
A week of talks + hands-on workshops on open science, electronics, 3D printing, and DeepLabCut for students & early-career researchers.
📍Homerton College, Cambridge (UK)
📅 Apply by 9 June 2026
🔗https://cambridgeopenlab.org/
May 22, 2026 at 10:19 AM
📢 Applications are open for the “Open Science in Practice” Summer School!
A week of talks + hands-on workshops on open science, electronics, 3D printing, and DeepLabCut for students & early-career researchers.
📍Homerton College, Cambridge (UK)
📅 Apply by 9 June 2026
🔗https://cambridgeopenlab.org/
A week of talks + hands-on workshops on open science, electronics, 3D printing, and DeepLabCut for students & early-career researchers.
📍Homerton College, Cambridge (UK)
📅 Apply by 9 June 2026
🔗https://cambridgeopenlab.org/
Here is our set of videos capturing eukaryotic flagellar motion at 200 fps, including 46 live cells and 56 demembranated models of the Chlamydomonas uniflagellate mutant. #protistsonsky
zenodo.org/records/1509...
zenodo.org/records/1509...
Data for "Revealing Rotational Characteristics of the Uniflagellate Mutant of Chlamydomonas reinhardtii through DeepLabCut-Based Autotracking"
Data for "Revealing Rotational Characteristics of the Uniflagellate Mutant of Chlamydomonas reinhardtii through DeepLabCut-Based Autotracking," microPublication Biology 10.17912/micropub.biology.00153...
zenodo.org
May 7, 2025 at 12:24 PM
Here is our set of videos capturing eukaryotic flagellar motion at 200 fps, including 46 live cells and 56 demembranated models of the Chlamydomonas uniflagellate mutant. #protistsonsky
zenodo.org/records/1509...
zenodo.org/records/1509...
Reposting our microPublication now indexed in PubMed:
We analyzed the movement of the unicellular green alga Chlamydomonas using #DeepLabCut, a deep learning-based tracking tool originally developed for animal behavior studies.
pubmed.ncbi.nlm.nih.gov/40331205/
Original videos: 🧵
#protistsonsky
We analyzed the movement of the unicellular green alga Chlamydomonas using #DeepLabCut, a deep learning-based tracking tool originally developed for animal behavior studies.
pubmed.ncbi.nlm.nih.gov/40331205/
Original videos: 🧵
#protistsonsky
May 7, 2025 at 12:18 PM
Reposting our microPublication now indexed in PubMed:
We analyzed the movement of the unicellular green alga Chlamydomonas using #DeepLabCut, a deep learning-based tracking tool originally developed for animal behavior studies.
pubmed.ncbi.nlm.nih.gov/40331205/
Original videos: 🧵
#protistsonsky
We analyzed the movement of the unicellular green alga Chlamydomonas using #DeepLabCut, a deep learning-based tracking tool originally developed for animal behavior studies.
pubmed.ncbi.nlm.nih.gov/40331205/
Original videos: 🧵
#protistsonsky