A great bout to start off another year of Gbvsr at GATK!
Heres tonight's top 8!
1st Releasebogus
2nd GATK Crothers
3rd Froakiethroat
4th GATK Bagel
5ths RST Falke and GATK Sab
7th GATK Hash
Heres tonight's top 8!
1st Releasebogus
2nd GATK Crothers
3rd Froakiethroat
4th GATK Bagel
5ths RST Falke and GATK Sab
7th GATK Hash
January 19, 2026 at 11:50 PM
A great bout to start off another year of Gbvsr at GATK!
Heres tonight's top 8!
1st Releasebogus
2nd GATK Crothers
3rd Froakiethroat
4th GATK Bagel
5ths RST Falke and GATK Sab
7th GATK Hash
Heres tonight's top 8!
1st Releasebogus
2nd GATK Crothers
3rd Froakiethroat
4th GATK Bagel
5ths RST Falke and GATK Sab
7th GATK Hash
Duran Duran Carless Memories 1981 youtube.com/watch?v=GATK...
February 16, 2025 at 5:44 PM
Duran Duran Carless Memories 1981 youtube.com/watch?v=GATK...
I like the phrase “GATK and pray”. Short reads and normal plant genomes are a messy mix.
Getting close to a robust pipeline for ARG inference for messy genomes.
1. get a vcf. Align short reads to a reference and GATK and pray, or use whole genome assemblies and github.com/baoxingsong/... followed by github.com/RILAB/argprep
1. get a vcf. Align short reads to a reference and GATK and pray, or use whole genome assemblies and github.com/baoxingsong/... followed by github.com/RILAB/argprep
github.com
April 4, 2026 at 6:16 PM
I like the phrase “GATK and pray”. Short reads and normal plant genomes are a messy mix.
KO!
A flurry of Plushies flames,fists and poison oh my!
A marvellous bracket indeed, heres your top 8!
1st GATK Releasebogus
2nd GATK Bear Noodles
3rd GATK ViewtifulGaz
4th Zano
5ths Croc and GATK Bagel
7ths CDev13 and GATK Prof Doggo
A flurry of Plushies flames,fists and poison oh my!
A marvellous bracket indeed, heres your top 8!
1st GATK Releasebogus
2nd GATK Bear Noodles
3rd GATK ViewtifulGaz
4th Zano
5ths Croc and GATK Bagel
7ths CDev13 and GATK Prof Doggo
November 3, 2025 at 11:51 PM
KO!
A flurry of Plushies flames,fists and poison oh my!
A marvellous bracket indeed, heres your top 8!
1st GATK Releasebogus
2nd GATK Bear Noodles
3rd GATK ViewtifulGaz
4th Zano
5ths Croc and GATK Bagel
7ths CDev13 and GATK Prof Doggo
A flurry of Plushies flames,fists and poison oh my!
A marvellous bracket indeed, heres your top 8!
1st GATK Releasebogus
2nd GATK Bear Noodles
3rd GATK ViewtifulGaz
4th Zano
5ths Croc and GATK Bagel
7ths CDev13 and GATK Prof Doggo
i'm not saying this happened here- it seems to be less of an issue on newer versions of GATK, and they also used ANGSD upstream in a way that may have mitigated it- but umm EXCUSE ME I HAVE QUESTIONS
April 12, 2025 at 1:57 AM
i'm not saying this happened here- it seems to be less of an issue on newer versions of GATK, and they also used ANGSD upstream in a way that may have mitigated it- but umm EXCUSE ME I HAVE QUESTIONS
KO!
A marvellous return for the King of Iron fist tournament at GATK!
Here's tonight's top 8!
1st TINY-TIGER
2nd Specky_
3rd Wuterghui
4th Narrator
5ths GATK ViewtifulGaz and RST Falke
7ths GATK Prof Doggo and Wrenevermore
A marvellous return for the King of Iron fist tournament at GATK!
Here's tonight's top 8!
1st TINY-TIGER
2nd Specky_
3rd Wuterghui
4th Narrator
5ths GATK ViewtifulGaz and RST Falke
7ths GATK Prof Doggo and Wrenevermore
September 15, 2025 at 10:50 PM
KO!
A marvellous return for the King of Iron fist tournament at GATK!
Here's tonight's top 8!
1st TINY-TIGER
2nd Specky_
3rd Wuterghui
4th Narrator
5ths GATK ViewtifulGaz and RST Falke
7ths GATK Prof Doggo and Wrenevermore
A marvellous return for the King of Iron fist tournament at GATK!
Here's tonight's top 8!
1st TINY-TIGER
2nd Specky_
3rd Wuterghui
4th Narrator
5ths GATK ViewtifulGaz and RST Falke
7ths GATK Prof Doggo and Wrenevermore
GATK: A USER ERROR has occurred: Query 'intervals' invalid for this tool
Me: *removes intervals*
GATK: A USER ERROR has occurred: No intervals specified
Me: *throws laptop into the woods, lets the moss and mushrooms reclaim the spoils of human folly*
Me: *removes intervals*
GATK: A USER ERROR has occurred: No intervals specified
Me: *throws laptop into the woods, lets the moss and mushrooms reclaim the spoils of human folly*
June 28, 2024 at 12:49 PM
GATK: A USER ERROR has occurred: Query 'intervals' invalid for this tool
Me: *removes intervals*
GATK: A USER ERROR has occurred: No intervals specified
Me: *throws laptop into the woods, lets the moss and mushrooms reclaim the spoils of human folly*
Me: *removes intervals*
GATK: A USER ERROR has occurred: No intervals specified
Me: *throws laptop into the woods, lets the moss and mushrooms reclaim the spoils of human folly*
KO!
Unbelievable fights!
The warriors pulled up once again for SF6 and didn't disappoint!
Here's your top8!
1st releasebogus
2nd GATK Bear Noodles
3rd GATK ViewtifulGaz
4th RDE Pizza time
5ths Narrator and Stiltedmoth
7ths GATK Bagel and Wrenevermore
Unbelievable fights!
The warriors pulled up once again for SF6 and didn't disappoint!
Here's your top8!
1st releasebogus
2nd GATK Bear Noodles
3rd GATK ViewtifulGaz
4th RDE Pizza time
5ths Narrator and Stiltedmoth
7ths GATK Bagel and Wrenevermore
February 17, 2025 at 11:46 PM
KO!
Unbelievable fights!
The warriors pulled up once again for SF6 and didn't disappoint!
Here's your top8!
1st releasebogus
2nd GATK Bear Noodles
3rd GATK ViewtifulGaz
4th RDE Pizza time
5ths Narrator and Stiltedmoth
7ths GATK Bagel and Wrenevermore
Unbelievable fights!
The warriors pulled up once again for SF6 and didn't disappoint!
Here's your top8!
1st releasebogus
2nd GATK Bear Noodles
3rd GATK ViewtifulGaz
4th RDE Pizza time
5ths Narrator and Stiltedmoth
7ths GATK Bagel and Wrenevermore
Getting close to a robust pipeline for ARG inference for messy genomes.
1. get a vcf. Align short reads to a reference and GATK and pray, or use whole genome assemblies and github.com/baoxingsong/... followed by github.com/RILAB/argprep
1. get a vcf. Align short reads to a reference and GATK and pray, or use whole genome assemblies and github.com/baoxingsong/... followed by github.com/RILAB/argprep
github.com
April 4, 2026 at 12:02 AM
Getting close to a robust pipeline for ARG inference for messy genomes.
1. get a vcf. Align short reads to a reference and GATK and pray, or use whole genome assemblies and github.com/baoxingsong/... followed by github.com/RILAB/argprep
1. get a vcf. Align short reads to a reference and GATK and pray, or use whole genome assemblies and github.com/baoxingsong/... followed by github.com/RILAB/argprep
KO!
Another wonderful SF6 bracket in the books!
Here's tonight's top 8!
1st GATK Bear Noodles
2nd GATK ViewtifulGaz
3rd GATK Bagel
4th Croc
5ths GATK MikeyJC and BigManZamasu
Another wonderful SF6 bracket in the books!
Here's tonight's top 8!
1st GATK Bear Noodles
2nd GATK ViewtifulGaz
3rd GATK Bagel
4th Croc
5ths GATK MikeyJC and BigManZamasu
July 14, 2025 at 10:47 PM
KO!
Another wonderful SF6 bracket in the books!
Here's tonight's top 8!
1st GATK Bear Noodles
2nd GATK ViewtifulGaz
3rd GATK Bagel
4th Croc
5ths GATK MikeyJC and BigManZamasu
Another wonderful SF6 bracket in the books!
Here's tonight's top 8!
1st GATK Bear Noodles
2nd GATK ViewtifulGaz
3rd GATK Bagel
4th Croc
5ths GATK MikeyJC and BigManZamasu
GATK was developed for human genomes. humans are, on the whole, genomically rather boring- we're all quite closely related. and obviously we have high-quality human references up the wazoo.
but something funny can happen if you have low-coverage data and a distant reference genome.
but something funny can happen if you have low-coverage data and a distant reference genome.
April 12, 2025 at 1:56 AM
GATK was developed for human genomes. humans are, on the whole, genomically rather boring- we're all quite closely related. and obviously we have high-quality human references up the wazoo.
but something funny can happen if you have low-coverage data and a distant reference genome.
but something funny can happen if you have low-coverage data and a distant reference genome.
SLASH!
A great night all round, the vibes were on point and the Strive was strong!
Here's tonight's top 8!
1st Spin
2nd RDE Pizza Time
3rd Croc
4th GATK Bear Noodles
5ths Big Dinner and GATK Crothers
7ths GATK ViewtifulGaz and RST Falke
A great night all round, the vibes were on point and the Strive was strong!
Here's tonight's top 8!
1st Spin
2nd RDE Pizza Time
3rd Croc
4th GATK Bear Noodles
5ths Big Dinner and GATK Crothers
7ths GATK ViewtifulGaz and RST Falke
August 25, 2025 at 10:59 PM
SLASH!
A great night all round, the vibes were on point and the Strive was strong!
Here's tonight's top 8!
1st Spin
2nd RDE Pizza Time
3rd Croc
4th GATK Bear Noodles
5ths Big Dinner and GATK Crothers
7ths GATK ViewtifulGaz and RST Falke
A great night all round, the vibes were on point and the Strive was strong!
Here's tonight's top 8!
1st Spin
2nd RDE Pizza Time
3rd Croc
4th GATK Bear Noodles
5ths Big Dinner and GATK Crothers
7ths GATK ViewtifulGaz and RST Falke
ampak ni bos, temveč brez gatk
February 20, 2025 at 2:30 PM
ampak ni bos, temveč brez gatk
the world is burning and I'm just sitting here trying to do my job updating some variant calling teaching material and my god the absolute state of the gatk documentation.
February 5, 2025 at 11:48 PM
the world is burning and I'm just sitting here trying to do my job updating some variant calling teaching material and my god the absolute state of the gatk documentation.
KO!
Excitement rocked the Old bank bar tonight, another sf6 bracket for the ages!
Here's your top 8!
1st Releasebogus
2nd GATK ViewtifulGaz
3rd @crothersx.bsky.social
4th @iwillbattle.bsky.social
5ths Wrenevermore and @profdoggo.bsky.social
7ths GATK Bagel and Doodles
Excitement rocked the Old bank bar tonight, another sf6 bracket for the ages!
Here's your top 8!
1st Releasebogus
2nd GATK ViewtifulGaz
3rd @crothersx.bsky.social
4th @iwillbattle.bsky.social
5ths Wrenevermore and @profdoggo.bsky.social
7ths GATK Bagel and Doodles
June 9, 2025 at 10:28 PM
KO!
Excitement rocked the Old bank bar tonight, another sf6 bracket for the ages!
Here's your top 8!
1st Releasebogus
2nd GATK ViewtifulGaz
3rd @crothersx.bsky.social
4th @iwillbattle.bsky.social
5ths Wrenevermore and @profdoggo.bsky.social
7ths GATK Bagel and Doodles
Excitement rocked the Old bank bar tonight, another sf6 bracket for the ages!
Here's your top 8!
1st Releasebogus
2nd GATK ViewtifulGaz
3rd @crothersx.bsky.social
4th @iwillbattle.bsky.social
5ths Wrenevermore and @profdoggo.bsky.social
7ths GATK Bagel and Doodles
December 8, 2024 at 2:31 PM
oh shit, i just noticed something scrolling back up from my fruitless search at the end of their methods for SI.
they use GATK HaplotypeCaller for their genotype calls. now, this is pretty standard, and i'd need to see the script to check, but there is a *specific* problem HaplotypeCaller can have.
they use GATK HaplotypeCaller for their genotype calls. now, this is pretty standard, and i'd need to see the script to check, but there is a *specific* problem HaplotypeCaller can have.
April 12, 2025 at 1:56 AM
oh shit, i just noticed something scrolling back up from my fruitless search at the end of their methods for SI.
they use GATK HaplotypeCaller for their genotype calls. now, this is pretty standard, and i'd need to see the script to check, but there is a *specific* problem HaplotypeCaller can have.
they use GATK HaplotypeCaller for their genotype calls. now, this is pretty standard, and i'd need to see the script to check, but there is a *specific* problem HaplotypeCaller can have.
KO!
A wonderful start to the new year with quite a brawl!
Seems sf6 passion still burns at GATK!
Heres tonight's top 8!
1st GATK Releasebogus
2nd GATK Bear Noodles
3rd GATK ViewtifulGaz
4th GATK Bagel
5ths GATK Prof Doggo and GATK Crothers
7th Wrenevermore
A wonderful start to the new year with quite a brawl!
Seems sf6 passion still burns at GATK!
Heres tonight's top 8!
1st GATK Releasebogus
2nd GATK Bear Noodles
3rd GATK ViewtifulGaz
4th GATK Bagel
5ths GATK Prof Doggo and GATK Crothers
7th Wrenevermore
January 12, 2026 at 11:42 PM
KO!
A wonderful start to the new year with quite a brawl!
Seems sf6 passion still burns at GATK!
Heres tonight's top 8!
1st GATK Releasebogus
2nd GATK Bear Noodles
3rd GATK ViewtifulGaz
4th GATK Bagel
5ths GATK Prof Doggo and GATK Crothers
7th Wrenevermore
A wonderful start to the new year with quite a brawl!
Seems sf6 passion still burns at GATK!
Heres tonight's top 8!
1st GATK Releasebogus
2nd GATK Bear Noodles
3rd GATK ViewtifulGaz
4th GATK Bagel
5ths GATK Prof Doggo and GATK Crothers
7th Wrenevermore
KO!
A wonderful evening and an amazing bracket, heres tonight's top 8!
1st Cee
2nd Funny Snagglepup
3rd Si
4th GATK Bagel
5ths OscillatingChamelon and RST Falke
7ths GATK Crothers and GATK Profdoggo
A wonderful evening and an amazing bracket, heres tonight's top 8!
1st Cee
2nd Funny Snagglepup
3rd Si
4th GATK Bagel
5ths OscillatingChamelon and RST Falke
7ths GATK Crothers and GATK Profdoggo
October 20, 2025 at 11:24 PM
KO!
A wonderful evening and an amazing bracket, heres tonight's top 8!
1st Cee
2nd Funny Snagglepup
3rd Si
4th GATK Bagel
5ths OscillatingChamelon and RST Falke
7ths GATK Crothers and GATK Profdoggo
A wonderful evening and an amazing bracket, heres tonight's top 8!
1st Cee
2nd Funny Snagglepup
3rd Si
4th GATK Bagel
5ths OscillatingChamelon and RST Falke
7ths GATK Crothers and GATK Profdoggo
Here are the results from WEEKEND WARRIORS #4!
Shoutouts to our top 3 players:
UMvC3
🥇 BTF | esler
🥈 BLF | Bahamut Zero 84
🥉 Dr.Booba
Invincible VS
🥇 BTF | esler
🥈 Dr.Booba
🥉 BALLS
CvS2
🥇 GATK | MD
🥈 GATK TWS | Dreamboat
🥉 RageBlazer
Shoutouts to our top 3 players:
UMvC3
🥇 BTF | esler
🥈 BLF | Bahamut Zero 84
🥉 Dr.Booba
Invincible VS
🥇 BTF | esler
🥈 Dr.Booba
🥉 BALLS
CvS2
🥇 GATK | MD
🥈 GATK TWS | Dreamboat
🥉 RageBlazer
May 24, 2026 at 7:21 PM
Here are the results from WEEKEND WARRIORS #4!
Shoutouts to our top 3 players:
UMvC3
🥇 BTF | esler
🥈 BLF | Bahamut Zero 84
🥉 Dr.Booba
Invincible VS
🥇 BTF | esler
🥈 Dr.Booba
🥉 BALLS
CvS2
🥇 GATK | MD
🥈 GATK TWS | Dreamboat
🥉 RageBlazer
Shoutouts to our top 3 players:
UMvC3
🥇 BTF | esler
🥈 BLF | Bahamut Zero 84
🥉 Dr.Booba
Invincible VS
🥇 BTF | esler
🥈 Dr.Booba
🥉 BALLS
CvS2
🥇 GATK | MD
🥈 GATK TWS | Dreamboat
🥉 RageBlazer
And heres our UMVC3 top 8!
1st BTF Esler
2nd TWS The Janitor
3rd GATK Crothers
4th GATK TWS releasebogus
5ths GATK Bruey and GATK Flynnus
7ths GATK Croc and RDE Pizza time
1st BTF Esler
2nd TWS The Janitor
3rd GATK Crothers
4th GATK TWS releasebogus
5ths GATK Bruey and GATK Flynnus
7ths GATK Croc and RDE Pizza time
June 8, 2026 at 10:51 PM
And heres our UMVC3 top 8!
1st BTF Esler
2nd TWS The Janitor
3rd GATK Crothers
4th GATK TWS releasebogus
5ths GATK Bruey and GATK Flynnus
7ths GATK Croc and RDE Pizza time
1st BTF Esler
2nd TWS The Janitor
3rd GATK Crothers
4th GATK TWS releasebogus
5ths GATK Bruey and GATK Flynnus
7ths GATK Croc and RDE Pizza time
Last but not least we gotta the results of side tournament, CVS2!
1st TWS GATK releasebogus
2nd GATK MD
3rd GATK Bear Noodles
4th GATK TWS Biodin
5ths RST Eteptseisae and BigManZamasu
7ths GATK Hash and BLF Bahamutzero84
1st TWS GATK releasebogus
2nd GATK MD
3rd GATK Bear Noodles
4th GATK TWS Biodin
5ths RST Eteptseisae and BigManZamasu
7ths GATK Hash and BLF Bahamutzero84
October 26, 2025 at 5:49 PM
Last but not least we gotta the results of side tournament, CVS2!
1st TWS GATK releasebogus
2nd GATK MD
3rd GATK Bear Noodles
4th GATK TWS Biodin
5ths RST Eteptseisae and BigManZamasu
7ths GATK Hash and BLF Bahamutzero84
1st TWS GATK releasebogus
2nd GATK MD
3rd GATK Bear Noodles
4th GATK TWS Biodin
5ths RST Eteptseisae and BigManZamasu
7ths GATK Hash and BLF Bahamutzero84
And that's Oktoberfist X in the books
Huge appreciation to all who took part and helped make it possible
We at the GATK team can not thank you folks enough ❤️
GGs all!
Huge appreciation to all who took part and helped make it possible
We at the GATK team can not thank you folks enough ❤️
GGs all!
October 25, 2025 at 10:08 PM
And that's Oktoberfist X in the books
Huge appreciation to all who took part and helped make it possible
We at the GATK team can not thank you folks enough ❤️
GGs all!
Huge appreciation to all who took part and helped make it possible
We at the GATK team can not thank you folks enough ❤️
GGs all!