#HaplotypePhasing
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jsantoyo.bsky.social
Advances in haplotype phasing and genotype imputation. #HaplotypePhasing #GenomeImputation @natrevgenet.nature.com
www.nature.com/articles/s41...
September 26, 2025 at 10:30 AM
jsantoyo.bsky.social
ChromPhaser: A HiFi Read Phasing Framework Integrating SNPmers and Hi-C Data. #HaplotypePhasing #HiFi #LongRead #Sequencing #HiC #Bioinformatics #Genomics @biorxiv-genomic.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
ChromPhaser: A HiFi Read Phasing Framework Integrating SNPmers and Hi-C Data
Assembling complex heterozygous genomes is hindered by highly similar allelic sequences and interchromosomal repeats, such as segmental duplications and rDNA arrays. Partitioning long HiFi reads by…
www.biorxiv.org
October 21, 2025 at 3:02 PM
informaq.bsky.social
QHap reformulates haplotype phasing as a Max-Cut problem solved via GPU-accelerated ballistic simulated bifurcation, achieving 4–20× speedup over HapCUT2/WhatsHap with zero switch error on MHC region across CycloneSEQ, HiFi, and ONT platforms.

#QuantumInspired #HaplotypePhasing #Bioinformatics
QHap: GPU-Accelerated Quantum-Inspired Haplotype Phasing via Max-Cut Optimization
iq.fp2.dev
March 30, 2026 at 2:27 PM
jsantoyo.bsky.social
Multi-platform framework for mapping somatic retrotransposition in human tissues. #SomaticRetrotransposons #MobileElementInsertions #MEIs #HaplotypePhasing #Genomics #Bioinformatics @biorxiv-genomic.bsky.social
www.biorxiv.org/content/10.1...
October 22, 2025 at 9:15 AM