DeepKOALA: a scalable deep learning framework for KEGG Orthology assignment academic.oup.com/bib/article/... #jcampubs
DeepKOALA: a scalable deep learning framework for KEGG Orthology assignment
Abstract. The KEGG Orthology (KO) system links DNA and protein sequences to biological functions and pathways, providing a curated, fundamental, and consis
academic.oup.com
September 3, 2026 at 4:45 PM
DeepKOALA: a scalable deep learning framework for KEGG Orthology assignment academic.oup.com/bib/article/... #jcampubs
Colour slide of the Kegg family boiling maple sap on the Mille Lacs reservation, Minnesota in the spring of 1947.
📷 Monroe Killy | Minnesota Historical Society
📷 Monroe Killy | Minnesota Historical Society
February 16, 2025 at 1:28 PM
Colour slide of the Kegg family boiling maple sap on the Mille Lacs reservation, Minnesota in the spring of 1947.
📷 Monroe Killy | Minnesota Historical Society
📷 Monroe Killy | Minnesota Historical Society
A short thread on differences in KEGG annotations using different tools, also relevant when using tools like METABOLIC, DRAM, and KEGGdecoder that use KEGG annotations 🧬🖥️🦠
September 11, 2023 at 1:02 PM
A short thread on differences in KEGG annotations using different tools, also relevant when using tools like METABOLIC, DRAM, and KEGGdecoder that use KEGG annotations 🧬🖥️🦠
Yeah, I talked about that, but it’s frustrating how no one see’s that as the problem. bsky.app/profile/kegg...
Seeing some reactions to Halo getting shunted off to Activision, and it’s giving a real “immigrants are stealing our jobs because of wokeism” feel.
No, Microsoft isn’t doing this to Punish Halo studios, they’re it because it’s cheaper.
No, Microsoft isn’t doing this to Punish Halo studios, they’re it because it’s cheaper.
September 24, 2026 at 1:29 AM
Yeah, I talked about that, but it’s frustrating how no one see’s that as the problem. bsky.app/profile/kegg...
DeepKOALA: A Fast and Accurate Deep Learning Framework for KEGG Orthology Assignment www.biorxiv.org/content/10.6... #jcampubs
January 8, 2026 at 3:08 PM
DeepKOALA: A Fast and Accurate Deep Learning Framework for KEGG Orthology Assignment www.biorxiv.org/content/10.6... #jcampubs
Curious, if someone wanted to annotate a large set of MAGs with KEGG, PFAM, CAZY, and then do some statistical comparison, how would you do that these days?
Back in the day I loved EnrichM, but the backend databases for KEGG, etc, are woefully out of date now.
Back in the day I loved EnrichM, but the backend databases for KEGG, etc, are woefully out of date now.
October 6, 2025 at 5:18 PM
Curious, if someone wanted to annotate a large set of MAGs with KEGG, PFAM, CAZY, and then do some statistical comparison, how would you do that these days?
Back in the day I loved EnrichM, but the backend databases for KEGG, etc, are woefully out of date now.
Back in the day I loved EnrichM, but the backend databases for KEGG, etc, are woefully out of date now.
2x Frog contributor Brad Barkley has a YA novel forthcoming that looks fantastic!
@bradbarkley.bsky.social
Pre-order link below! 👇🏼👇🏼
regal-house-publishing.mybigcommerce.com/the-reel-lif...
@bradbarkley.bsky.social
Pre-order link below! 👇🏼👇🏼
regal-house-publishing.mybigcommerce.com/the-reel-lif...
The Reel Life of Zara Kegg
The Reel Life of Zara Kegg by Brad Barkley
regal-house-publishing.mybigcommerce.com
December 5, 2025 at 6:03 PM
2x Frog contributor Brad Barkley has a YA novel forthcoming that looks fantastic!
@bradbarkley.bsky.social
Pre-order link below! 👇🏼👇🏼
regal-house-publishing.mybigcommerce.com/the-reel-lif...
@bradbarkley.bsky.social
Pre-order link below! 👇🏼👇🏼
regal-house-publishing.mybigcommerce.com/the-reel-lif...
lol. What an offer. Going to get myself a free kegg.
July 20, 2025 at 4:54 PM
lol. What an offer. Going to get myself a free kegg.
DeepKOALA: A Fast and Accurate Deep Learning Framework for KEGG Orthology Assignment www.biorxiv.org/content/10.6...
January 28, 2026 at 2:00 PM
DeepKOALA: A Fast and Accurate Deep Learning Framework for KEGG Orthology Assignment www.biorxiv.org/content/10.6...
antinukleären Autoantikörpern aufweisen, während Patienten mit LC erhöhte zirkulierende Werte von Organschadensmarkern aufweisen.
Insgesamt deuten diese Beobachtungen auf eine gemeinsame anhaltende antivirale Reaktion mit einer unterschiedlichen zugrunde liegenden Biologie der
Insgesamt deuten diese Beobachtungen auf eine gemeinsame anhaltende antivirale Reaktion mit einer unterschiedlichen zugrunde liegenden Biologie der
April 18, 2025 at 5:34 PM
antinukleären Autoantikörpern aufweisen, während Patienten mit LC erhöhte zirkulierende Werte von Organschadensmarkern aufweisen.
Insgesamt deuten diese Beobachtungen auf eine gemeinsame anhaltende antivirale Reaktion mit einer unterschiedlichen zugrunde liegenden Biologie der
Insgesamt deuten diese Beobachtungen auf eine gemeinsame anhaltende antivirale Reaktion mit einer unterschiedlichen zugrunde liegenden Biologie der
I would also go the kegg route, and use either keggdecoder: github.com/bjtully/BioD...
or metabolic:
github.com/Anantharaman...
or dram:
github.com/WrightonLabC...
to kegg a general sense of the annotations.
kegg default thresholds can be too stringent for some orgs.
Adding to comp bio feed: 🧬🖥️
or metabolic:
github.com/Anantharaman...
or dram:
github.com/WrightonLabC...
to kegg a general sense of the annotations.
kegg default thresholds can be too stringent for some orgs.
Adding to comp bio feed: 🧬🖥️
September 7, 2023 at 7:44 AM
I would also go the kegg route, and use either keggdecoder: github.com/bjtully/BioD...
or metabolic:
github.com/Anantharaman...
or dram:
github.com/WrightonLabC...
to kegg a general sense of the annotations.
kegg default thresholds can be too stringent for some orgs.
Adding to comp bio feed: 🧬🖥️
or metabolic:
github.com/Anantharaman...
or dram:
github.com/WrightonLabC...
to kegg a general sense of the annotations.
kegg default thresholds can be too stringent for some orgs.
Adding to comp bio feed: 🧬🖥️
I’m offended not stupid, smash bsky.app/profile/kegg...
April 25, 2026 at 8:23 PM
I’m offended not stupid, smash bsky.app/profile/kegg...
We are back with more original concept art, this time for the Great Wolf Guardian Outfit. This set of sketches was created by incredible concept artist David Kegg. From the Great Wolf Guardian Axe to the Great Wolf Guardian Cape, we hope you enjoy this peek behind the curtain!
June 24, 2026 at 9:01 PM
We are back with more original concept art, this time for the Great Wolf Guardian Outfit. This set of sketches was created by incredible concept artist David Kegg. From the Great Wolf Guardian Axe to the Great Wolf Guardian Cape, we hope you enjoy this peek behind the curtain!
A starred review from Kirkus Reviews for @bradbarkley.bsky.social 's THE REEL LIFE OF ZARA KEGG. Congrats, Brad!!!!
April 27, 2026 at 4:07 PM
A starred review from Kirkus Reviews for @bradbarkley.bsky.social 's THE REEL LIFE OF ZARA KEGG. Congrats, Brad!!!!
kegg_metabolic: Metabolic networks from KEGG (2006).
109 metabolic networks of various species, as extracted from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database in March 2006.
1593 nodes, 4504 edges.
https://networks.skewed.de/net/kegg_metabolic#atu
Ridiculogram:
109 metabolic networks of various species, as extracted from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database in March 2006.
1593 nodes, 4504 edges.
https://networks.skewed.de/net/kegg_metabolic#atu
Ridiculogram:
September 28, 2026 at 3:00 AM
kegg_metabolic: Metabolic networks from KEGG (2006).
109 metabolic networks of various species, as extracted from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database in March 2006.
1593 nodes, 4504 edges.
https://networks.skewed.de/net/kegg_metabolic#atu
Ridiculogram:
109 metabolic networks of various species, as extracted from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database in March 2006.
1593 nodes, 4504 edges.
https://networks.skewed.de/net/kegg_metabolic#atu
Ridiculogram:
4.5-STAR REVIEW⭐️⭐️⭐️⭐️💫: THE REEL LIFE OF ZARA KEGG by Brad Barkley regalhouse.bsky.social
👉THE REEL LIFE OF ZARA KEGG is a quirky read filled with characters trying their best against a backdrop of a classic movie theater with... bit.ly/4eJddd0 #bookreview #booksky #youngadult
👉THE REEL LIFE OF ZARA KEGG is a quirky read filled with characters trying their best against a backdrop of a classic movie theater with... bit.ly/4eJddd0 #bookreview #booksky #youngadult
June 16, 2026 at 2:03 PM
4.5-STAR REVIEW⭐️⭐️⭐️⭐️💫: THE REEL LIFE OF ZARA KEGG by Brad Barkley regalhouse.bsky.social
👉THE REEL LIFE OF ZARA KEGG is a quirky read filled with characters trying their best against a backdrop of a classic movie theater with... bit.ly/4eJddd0 #bookreview #booksky #youngadult
👉THE REEL LIFE OF ZARA KEGG is a quirky read filled with characters trying their best against a backdrop of a classic movie theater with... bit.ly/4eJddd0 #bookreview #booksky #youngadult
kegg_metabolic: Metabolic networks from KEGG (2006).
109 metabolic networks of various species, as extracted from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database in March 2006.
650 nodes, 1526 edges.
https://networks.skewed.de/net/kegg_metabolic#cmu
Ridiculogram:
109 metabolic networks of various species, as extracted from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database in March 2006.
650 nodes, 1526 edges.
https://networks.skewed.de/net/kegg_metabolic#cmu
Ridiculogram:
September 23, 2026 at 5:00 AM
kegg_metabolic: Metabolic networks from KEGG (2006).
109 metabolic networks of various species, as extracted from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database in March 2006.
650 nodes, 1526 edges.
https://networks.skewed.de/net/kegg_metabolic#cmu
Ridiculogram:
109 metabolic networks of various species, as extracted from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database in March 2006.
650 nodes, 1526 edges.
https://networks.skewed.de/net/kegg_metabolic#cmu
Ridiculogram:
ggkegg: plot KEGG pathway info with ggplot2 github.com/noriakis/ggk...
October 18, 2023 at 3:43 PM
ggkegg: plot KEGG pathway info with ggplot2 github.com/noriakis/ggk...
He's going Kaio-Kegg x4!
January 8, 2025 at 4:23 PM
He's going Kaio-Kegg x4!
Alpha-, Delta- und Omicron - wie die virale Evolution die Störung von Wirtssignalwegen zunehmend verstärkt, wobei Omicron insbesondere mit neurodegenerativen Prozessen in Verbindung steht
Diese Studie zeigt auf, „wie sich die Protein-Protein-Interaktion von SARS-CoV-2 mit …
Diese Studie zeigt auf, „wie sich die Protein-Protein-Interaktion von SARS-CoV-2 mit …
December 7, 2025 at 2:57 PM
Alpha-, Delta- und Omicron - wie die virale Evolution die Störung von Wirtssignalwegen zunehmend verstärkt, wobei Omicron insbesondere mit neurodegenerativen Prozessen in Verbindung steht
Diese Studie zeigt auf, „wie sich die Protein-Protein-Interaktion von SARS-CoV-2 mit …
Diese Studie zeigt auf, „wie sich die Protein-Protein-Interaktion von SARS-CoV-2 mit …
Hard to work out from this article but this was a 84 year old (fit and healthy) pedestrian who was hit and killed by a car driver.
(He happened to be a former president of the Chartered Institute of Housing as well as a much loved member of the local community)
(He happened to be a former president of the Chartered Institute of Housing as well as a much loved member of the local community)
Tribute to great-grandad who died after Southbourne car crash
Peter Kegg is described as "generous and caring" after he was hit by a car in Bournemouth in August.
www.bbc.co.uk
September 19, 2026 at 6:16 AM
Hard to work out from this article but this was a 84 year old (fit and healthy) pedestrian who was hit and killed by a car driver.
(He happened to be a former president of the Chartered Institute of Housing as well as a much loved member of the local community)
(He happened to be a former president of the Chartered Institute of Housing as well as a much loved member of the local community)
Ggkegg: analysis and visualization of KEGG data utilizing grammar of graphics academic.oup.com/bioinformati... #jcampubs
Ggkegg: analysis and visualization of KEGG data utilizing grammar of graphics
AbstractSummary. The Kyoto Encyclopedia of Genes and Genomes (KEGG) database serves as a valuable systems biology resource and is widely utilized in diverse res
academic.oup.com
October 17, 2023 at 1:20 PM
Ggkegg: analysis and visualization of KEGG data utilizing grammar of graphics academic.oup.com/bioinformati... #jcampubs
🧬 KEGG Pathways Enrichment Results!
🧪 Top 10 significant enriched pathways include:
🔬 Infectious disease pathways (COVID-19, Tuberculosis, Staphylococcus aureus)
🔬 Ribosomal activity & phagosome function
🔬 Immune-driven diseases (Asthma, Alcoholic liver disease)
#Bioinformatics #RNAseq #KEGG
🧪 Top 10 significant enriched pathways include:
🔬 Infectious disease pathways (COVID-19, Tuberculosis, Staphylococcus aureus)
🔬 Ribosomal activity & phagosome function
🔬 Immune-driven diseases (Asthma, Alcoholic liver disease)
#Bioinformatics #RNAseq #KEGG
April 5, 2025 at 12:35 AM
🧬 KEGG Pathways Enrichment Results!
🧪 Top 10 significant enriched pathways include:
🔬 Infectious disease pathways (COVID-19, Tuberculosis, Staphylococcus aureus)
🔬 Ribosomal activity & phagosome function
🔬 Immune-driven diseases (Asthma, Alcoholic liver disease)
#Bioinformatics #RNAseq #KEGG
🧪 Top 10 significant enriched pathways include:
🔬 Infectious disease pathways (COVID-19, Tuberculosis, Staphylococcus aureus)
🔬 Ribosomal activity & phagosome function
🔬 Immune-driven diseases (Asthma, Alcoholic liver disease)
#Bioinformatics #RNAseq #KEGG
check out my good friend Keggy, they draw killer sheaths
bsky.app/profile/kegg...
bsky.app/profile/kegg...
Working on commissions still, but ran back across this old sketch from '23 and thought I'd share :3 Me waking up as a bun.
February 21, 2026 at 11:57 PM
check out my good friend Keggy, they draw killer sheaths
bsky.app/profile/kegg...
bsky.app/profile/kegg...