🎯 Bottom line: Net1 mRNA has to reach the midbody for cells to complete abscission efficiently, and Net1 protein is a new player in building the branched actin network that makes abscission, and faithful cell division, possible.
🎯 Bottom line: Net1 mRNA has to reach the midbody for cells to complete abscission efficiently, and Net1 protein is a new player in building the branched actin network that makes abscission, and faithful cell division, possible.
We tested this by measuring Arp2/3 buildup at the midbody across our cell lines. Arp2/3 accumulation was lost in Net1 knockouts, restored by the full-length UTR rescue, and NOT restored by the ΔLE rescue, exactly what our model predicted.
We tested this by measuring Arp2/3 buildup at the midbody across our cell lines. Arp2/3 accumulation was lost in Net1 knockouts, restored by the full-length UTR rescue, and NOT restored by the ΔLE rescue, exactly what our model predicted.
But what's the mechanism? Does having Net1 mRNA at the midbody actually build up more Net1 protein there? Using our knockout/rescue system: yes! Only Net1 protein made from RNA containing the LE showed up in meaningful amounts near the midbody.
But what's the mechanism? Does having Net1 mRNA at the midbody actually build up more Net1 protein there? Using our knockout/rescue system: yes! Only Net1 protein made from RNA containing the LE showed up in meaningful amounts near the midbody.
🔑 So, to recap: an RNA gets trafficked to the midbody during cell division, and when it's missing, the midbody can't finish its job (abscission). This may be a clear-cut example where localizing a specific RNA has a defined, essential function!
🔑 So, to recap: an RNA gets trafficked to the midbody during cell division, and when it's missing, the midbody can't finish its job (abscission). This may be a clear-cut example where localizing a specific RNA has a defined, essential function!
So where exactly does the cell cycle stall when Net1 RNA can't get to the midbody? Net1 knockout cells linger too long in telophase, the last stage of mitosis, pointing to a problem with abscission itself. The full-length UTR transgene fixed this. The ΔLE version didn't.
So where exactly does the cell cycle stall when Net1 RNA can't get to the midbody? Net1 knockout cells linger too long in telophase, the last stage of mitosis, pointing to a problem with abscission itself. The full-length UTR transgene fixed this. The ΔLE version didn't.
To confirm this wasn't a fluke, we made a Net1 knockout line and rescued it with Net1 transgenes carrying either the full 3' UTR (traffics to the midbody) or a version missing the LE, "ΔLE" (doesn't traffic). Again, the LE was required for cells to divide efficiently.
To confirm this wasn't a fluke, we made a Net1 knockout line and rescued it with Net1 transgenes carrying either the full 3' UTR (traffics to the midbody) or a version missing the LE, "ΔLE" (doesn't traffic). Again, the LE was required for cells to divide efficiently.
Now we finally knew what to target! We used antisense oligos (ASOs), short synthetic sequences that bind to and block a specific stretch of RNA, against the LE. They blocked Net1 RNA from reaching the midbody. And, unexpectedly, cell division slowed way down! ⏳
Now we finally knew what to target! We used antisense oligos (ASOs), short synthetic sequences that bind to and block a specific stretch of RNA, against the LE. They blocked Net1 RNA from reaching the midbody. And, unexpectedly, cell division slowed way down! ⏳
One region in the middle of the UTR stood out. Oligos from it were enough on their own to send the reporter to the midbody. We called this the "localization element" (LE). Removing just this region also blocked transport, so it's both sufficient and necessary.
One region in the middle of the UTR stood out. Oligos from it were enough on their own to send the reporter to the midbody. We called this the "localization element" (LE). Removing just this region also blocked transport, so it's both sufficient and necessary.
Okay, but which sequences *within* that 3' UTR are doing the work? To find out, we used a massively parallel reporter assay (MPRA). We tiled ~500 short DNA pieces across the Net1 3' UTR, put each into a reporter RNA, and measured how well each one reached the midbody.
Okay, but which sequences *within* that 3' UTR are doing the work? To find out, we used a massively parallel reporter assay (MPRA). We tiled ~500 short DNA pieces across the Net1 3' UTR, put each into a reporter RNA, and measured how well each one reached the midbody.
Many "zip code" sequences that direct RNAs to specific places live in the 3' UTR, the tail end of an RNA that doesn't code for protein. We fused Net1's 3' UTR to a reporter RNA and tracked it by RT-qPCR. Net1's 3' UTR alone was enough to send the reporter to the midbody.
Many "zip code" sequences that direct RNAs to specific places live in the 3' UTR, the tail end of an RNA that doesn't code for protein. We fused Net1's 3' UTR to a reporter RNA and tracked it by RT-qPCR. Net1's 3' UTR alone was enough to send the reporter to the midbody.
Luckily, we can isolate the RNA contents of midbodies and compare them to whole cells. We and others had already found that specific RNAs are shuttled to the midbody. We started with one of the most enriched RNAs, Net1, and asked: how does it get there?
Luckily, we can isolate the RNA contents of midbodies and compare them to whole cells. We and others had already found that specific RNAs are shuttled to the midbody. We started with one of the most enriched RNAs, Net1, and asked: how does it get there?
Some background: the midbody recruits a series of proteins to carry out abscission. But are RNA molecules recruited too? And if so, does it actually matter? Does having RNA there help the midbody do its job?
Some background: the midbody recruits a series of proteins to carry out abscission. But are RNA molecules recruited too? And if so, does it actually matter? Does having RNA there help the midbody do its job?
Our lab studies how RNA molecules get trafficked to specific spots in the cell and why that matters for cell function. The Prekeris lab are experts on the midbody and how it drives cell division and abscission, the final "cut" that separates two new cells.
Our lab studies how RNA molecules get trafficked to specific spots in the cell and why that matters for cell function. The Prekeris lab are experts on the midbody and how it drives cell division and abscission, the final "cut" that separates two new cells.
The character of the drawing dosent have a name, yet.
#VgenArtist #practice #digitalart #devianartartist #lineart #artstudy #cartoonstyle #oc #namelessoc #fullcolor #midbody #knitcap
The character of the drawing dosent have a name, yet.
#VgenArtist #practice #digitalart #devianartartist #lineart #artstudy #cartoonstyle #oc #namelessoc #fullcolor #midbody #knitcap