#NatProd
🧫🧪 #natprod
Very pleased to announce that our manuscript describing @jgi.doe.gov 's Secondary Metabolism Collaboratory is now available! SMC has been up and active for a while now, but I'm really excited to start seeing more activity on here. Lots more to come.

doi.org/10.1093/nar/...
The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters
Abstract. Secondary metabolites are small molecules produced by all corners of life, often with specialized bioactive functions with clinical and environme
doi.org
November 17, 2024 at 1:16 PM
Welkom Gilles!
🧫🦠🧪 #natprod
First post on bluesky. Inevitably Streptomyces coelicolor, literally blue as the sky @stcmicrobeblog.bsky.social
November 30, 2023 at 12:55 AM
Next preprint out from my work @oconnorlab.bsky.social @mpi-ce.bsky.social : the discovery or iridoid cyclase in asterids!
Thread below.
#PlantScience
#natprod

www.biorxiv.org/content/10.1...
www.biorxiv.org
June 18, 2025 at 1:28 PM
Here is our experimental answer to the question of how plant leaves take up volatiles. Tested with the very cool Kalanchoë laxiflora, which has two types of leaves with opposite stomatal opening patterns. With @heikelindner.bsky.social and colleagues. Happy reading! t.co/aU77BZTqYV
August 29, 2026 at 5:52 AM
#natprod 🧫🧪
Biotechnological & pharmaceutical potential of 28 novel type strains of Actinomycetes (incl. 23 Streptomyces species) from different environments worldwide.

Proposed species names in honour of female scientists 👏 incl Lone Gram & Liz Wellington doi.org/10.1016/j.cr...
October 27, 2024 at 8:01 PM
Interesting read on Streptomyces #natprod rapamycin's potential role as treatment for long Covid and ME
🧫🦠🧪💊🛌
July 29, 2025 at 10:23 PM
New preprint out from the @oconnorlab.bsky.social department led by Moonyoung Kang, Anh Vu and Lorenzo Caputi.
Metabolomics and RNA-seq on the same single cell!

Or as we call it here in the lab: "the split-cell method"
Single-cell metabolome and RNA-seq multiplexing on single plant cells https://www.biorxiv.org/content/10.1101/2025.05.20.655036v1
May 23, 2025 at 6:27 PM
🧫🧪🦠 #natprod #secmet
January 8, 2025 at 12:37 PM
Marchantia might seem an unlikely biotech crop, but it’s worth trying. In Aurore’s thesis, we pushed this concept by engineering the auronidins with MpMYB14 and using the pigments to dye cotton. It ended up giving a very unique and beautiful product. #PlantScience www.biorxiv.org/content/10.6...
February 16, 2026 at 6:05 PM
🧫🧪🦠 #natprod
November 30, 2024 at 8:03 PM
Yay for actinos and #natprod! See you in Belfast?!
🧫🧪🧬🦠
Work with actinomycetes or mycobacteria? Dedicated symposia shine the spotlight on these remarkable bacteria at #Microbio26 in Belfast. Explore the full variety of sessions and submit your work today.

Abstract submissions close on 11 November: microb.io/AC26Abstracts
November 2, 2025 at 9:06 PM
Great ancestral reconstruction work by Matt!
#PlantScience
#natprod
February 19, 2024 at 12:40 PM
June 3, 2025 at 6:50 AM
Here, we explore the protein-protein interactions between monoterpene indole alkaloid biosynthetic enzymes. This work was the result of strong effort by Chloe Langley, who Allwin McDonald and I had the privilege to work with. Congrats to the team!

ACS Chemical Biology pubs.acs.org/doi/full/10....
Protein–Protein Interactions Modulate a Key Branch Point in Monoterpene Indole Alkaloid Biosynthesis
Biosynthetic pathways of specialized metabolites utilize protein–protein interactions (PPIs) to facilitate metabolic flux and sequester reactive intermediates. The monoterpene indole alkaloid pathway of Catharanthus roseus contains several metabolic branch points that may be mediated via transient PPIs. We investigated one branch point of this pathway that is responsible for the conversion of the intermediate dehydrosecodine into three possible cyclized alkaloid scaffolds, which act as intermediates en route to medicinally important alkaloids, such as vinblastine. We verified previously observed PPIs between reductase-cyclase pairs and additionally uncovered PPIs between evolutionarily related protein homologues. Through structural analysis of dehydrosecodine cyclases, we identified surface residues that appear to mediate interaction with the upstream reductase. We then demonstrated, via in vitro competition assays, that these residues impact the distribution of downstream products. These results highlight the significance of transient PPIs in the control and regulation of specialized metabolite pathways.
pubs.acs.org
February 1, 2026 at 9:17 PM
#natprod 🧫🦠🧪
August 19, 2024 at 3:40 PM
May 18, 2026 at 10:40 AM
Congratulations Franziska Höhn, our newest Ziemert lab PhD, to a well deserved title and an excellent defense! We are very proud of you and wish you all the best in the future! #proudPI #newPhD #NatProd
December 19, 2024 at 7:42 PM
🎉We were delighted to present the 2025 Natural Product Reports Emerging Investigator Lectureship to @ntiekfidele.bsky.social from the University of Buea at the Drug Discovery Africa 2025 conference last month! #chemsky #natprod #plantscience
April 9, 2025 at 12:01 PM
📢Our latest issue is now online!

🔓Check out the #OpenAccess review behind the cover by @ericbrownprof.bsky.social & co. @mcmasteruniversity.bsky.social highlighting an overlooked subset of natural product antibiotics that inhibit nutrient metabolism #natprod #secmet

doi.org/10.1039/d6np...
September 23, 2026 at 3:13 PM
Sarah O'Connor finally arrived on the blue side :)

#PlantScience #natprod
Please note, this is a work channel about natural product biosynthesis. But I am going to post the occasional cat picture when I feel like it.
December 14, 2023 at 8:48 PM
Indeed, very nice work led by @omarkamileen.bsky.social
#natprod
#PlantBiology
Very nice preprint from @oconnorlab.bsky.social on medicinal plant iboga. Things I found interesting: 1) multi-gene constructs outperformed single-gene constructs co-infiltration; 2) expressing iboga enzymes in Catharanthus petals led to iboga specific metabolites.

www.biorxiv.org/content/10.1...
July 2, 2024 at 12:22 PM
New preprint of my colleagues here at the @oconnorlab.bsky.social department:
An oxidase and a reductase convert an S to an R epimer in Kratom plants. Nice work!
#natprod
#PlantSciences
Enzymatic epimerization of monoterpene indole alkaloids in Kratom https://www.biorxiv.org/content/10.1101/2024.12.13.628308v1
December 15, 2024 at 4:08 PM