Apoplast multi-omics profiling during fungal infection uncovers new players of basal and early induced immunity in Arabidopsis thaliana
A #CommunityResource article by Fagard et al.
👇
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
#LatestIssue #PlantScience
A #CommunityResource article by Fagard et al.
👇
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
#LatestIssue #PlantScience
November 5, 2026 at 8:03 PM
Apoplast multi-omics profiling during fungal infection uncovers new players of basal and early induced immunity in Arabidopsis thaliana
A #CommunityResource article by Fagard et al.
👇
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
#LatestIssue #PlantScience
A #CommunityResource article by Fagard et al.
👇
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
#LatestIssue #PlantScience
Announcement: I will be starting in Fall of 2027 as an Assistant Professor at UNC Chapel Hill in the CS department.
My lab will build algorithms for large-scale microbial and meta-omics sequence analysis. I'll be recruiting PhD students. More info at jshaw-lab-compbio.github.io
My lab will build algorithms for large-scale microbial and meta-omics sequence analysis. I'll be recruiting PhD students. More info at jshaw-lab-compbio.github.io
Research
The JShaw Lab will be starting in the Fall of 2027 in the Department of Computer Science at the University of North Carolina at Chapel Hill.
jshaw-lab-compbio.github.io
November 8, 2026 at 9:15 PM
Announcement: I will be starting in Fall of 2027 as an Assistant Professor at UNC Chapel Hill in the CS department.
My lab will build algorithms for large-scale microbial and meta-omics sequence analysis. I'll be recruiting PhD students. More info at jshaw-lab-compbio.github.io
My lab will build algorithms for large-scale microbial and meta-omics sequence analysis. I'll be recruiting PhD students. More info at jshaw-lab-compbio.github.io
Do not miss the thoughtful perspective from @markcblaser.bsky.social on this fascinating discovery of a ne
Multi-omics identifies convergent genetic drivers of #MedialArterialCalcification in #ChronicKidneyDisease
academic.oup.com/eurheartj/ad...
Multi-omics identifies convergent genetic drivers of #MedialArterialCalcification in #ChronicKidneyDisease
academic.oup.com/eurheartj/ad...
November 6, 2026 at 8:42 PM
Do not miss the thoughtful perspective from @markcblaser.bsky.social on this fascinating discovery of a ne
Multi-omics identifies convergent genetic drivers of #MedialArterialCalcification in #ChronicKidneyDisease
academic.oup.com/eurheartj/ad...
Multi-omics identifies convergent genetic drivers of #MedialArterialCalcification in #ChronicKidneyDisease
academic.oup.com/eurheartj/ad...
Wondered what a career in environmental science looks like? Dr Adam Burke, Research Associate at NERC Environmental ‘Omics Facility, uses cutting-edge metabolomics and mass spectrometry techniques to help researchers understand environmental challenges: https://ow.ly/LXVb5104B3E #GreenCareersWeek
November 6, 2026 at 5:14 PM
Wondered what a career in environmental science looks like? Dr Adam Burke, Research Associate at NERC Environmental ‘Omics Facility, uses cutting-edge metabolomics and mass spectrometry techniques to help researchers understand environmental challenges: https://ow.ly/LXVb5104B3E #GreenCareersWeek
Lately for me it’s been to go through the 400 figures the authors crammed into supplement and find out which have meaning and which are window dressing. And to temper language that makes sweeping claims based on weak correlations. But I do omics stuff
Which of these is it
1) Help authors improve papers
2) Identify flaws in the work
3) Assess the extent to which claims are supported by data
4) Advise the editor on a decision
5) Provide guidance/context for readers
6) Rank/filter papers in a journal hierarchy
2/n
1) Help authors improve papers
2) Identify flaws in the work
3) Assess the extent to which claims are supported by data
4) Advise the editor on a decision
5) Provide guidance/context for readers
6) Rank/filter papers in a journal hierarchy
2/n
November 7, 2026 at 8:42 AM
Lately for me it’s been to go through the 400 figures the authors crammed into supplement and find out which have meaning and which are window dressing. And to temper language that makes sweeping claims based on weak correlations. But I do omics stuff
A practical resource for multi-omics data integration in microbial systems www.microbiologyresearch.org/content/jour... #jcampubs
November 4, 2026 at 4:57 PM
A practical resource for multi-omics data integration in microbial systems www.microbiologyresearch.org/content/jour... #jcampubs
Lysosomal multi-omics reveals altered sphingolipid catabolism associated with lysosomal dysfunction in the aging brain
Lysosomal multi-omics reveals altered sphingolipid catabolism associated with lysosomal dysfunction in the aging brain
Sarkar et al. use organelle-specific mass spectrometry-based lipidomics and proteomics followed by multi-omics factor analyses to investigate the role of lysosomal lipids in murine brain aging. The data uncover age-dependent accumulation of myelin components and altered sphingolipid catabolism resembling lysosomal storage diseases and associated with lysosomal dysfunction.
dlvr.it
November 4, 2026 at 3:38 PM
Lysosomal multi-omics reveals altered sphingolipid catabolism associated with lysosomal dysfunction in the aging brain
📝 Autonomous Labs Create New Instrument Niches to Fill
✍️ Omics! Omics!
✍️ Omics! Omics!
Autonomous Labs Create New Instrument Niches to Fill
Article de Omics! Omics!
omicsomics.blogspot.com
November 5, 2026 at 8:46 AM
📝 Autonomous Labs Create New Instrument Niches to Fill
✍️ Omics! Omics!
✍️ Omics! Omics!
The authors included RRIDs in their in medRxiv paper! Thanks for making your methods matter! #RRID #STMpublishing #reproducibility
Integrating sequence-to-omics predictions and personal multi-omics for rare variant prioritization
Read the full paper: Integrating sequence-to-omics predictions and personal multi-omics for rare variant prioritization
doi.org
November 7, 2026 at 8:01 AM
The authors included RRIDs in their in medRxiv paper! Thanks for making your methods matter! #RRID #STMpublishing #reproducibility
Stanford and Broad Institute researchers analyzed multi-omics data from over 10,000 people in NIH’s All of Us program.
They identified 5,186 rare genetic variants affecting disease genes, most lacking clinical classification.
www.medrxiv.org/content/10.6...
They identified 5,186 rare genetic variants affecting disease genes, most lacking clinical classification.
www.medrxiv.org/content/10.6...
Multi-omics in the All Of Us Research Program expands mapping genetic mechanisms in health and disease
The All of Us (AoU) Research Program multi-omics cohort was developed to expand discovery of the molecular mechanisms underlying health and disease. Here, we report on the AoU multi-omics cohort compr...
www.medrxiv.org
November 3, 2026 at 1:24 AM
Stanford and Broad Institute researchers analyzed multi-omics data from over 10,000 people in NIH’s All of Us program.
They identified 5,186 rare genetic variants affecting disease genes, most lacking clinical classification.
www.medrxiv.org/content/10.6...
They identified 5,186 rare genetic variants affecting disease genes, most lacking clinical classification.
www.medrxiv.org/content/10.6...
This man has caused more damage than most people know, but for me, the worst thing he did wasn't Iran/Contra, wasn't ignoring the AIDS epidemic, it wasn't even "Reagan-omics". It was the removal of the Fairness Doctrine act. Long story short, it's the reason Fox News exists.
November 6, 2026 at 5:00 PM
This man has caused more damage than most people know, but for me, the worst thing he did wasn't Iran/Contra, wasn't ignoring the AIDS epidemic, it wasn't even "Reagan-omics". It was the removal of the Fairness Doctrine act. Long story short, it's the reason Fox News exists.
Omics-scale decoding of protein N-glycosylation using protein language model embeddings https://www.biorxiv.org/content/10.64898/2026.11.02.763593v1
November 4, 2026 at 8:46 PM
Omics-scale decoding of protein N-glycosylation using protein language model embeddings https://www.biorxiv.org/content/10.64898/2026.11.02.763593v1
From wild to tamed: Reimagining novel crops through omics and local plant diversity
#Review by Alexandra Sanfeliu Meliá and Pablo D. Cárdenas
nph.onlinelibrary.wiley.com/doi/10.1002/...
#LatestIssue #PlantScience
#Review by Alexandra Sanfeliu Meliá and Pablo D. Cárdenas
nph.onlinelibrary.wiley.com/doi/10.1002/...
#LatestIssue #PlantScience
November 4, 2026 at 9:03 PM
From wild to tamed: Reimagining novel crops through omics and local plant diversity
#Review by Alexandra Sanfeliu Meliá and Pablo D. Cárdenas
nph.onlinelibrary.wiley.com/doi/10.1002/...
#LatestIssue #PlantScience
#Review by Alexandra Sanfeliu Meliá and Pablo D. Cárdenas
nph.onlinelibrary.wiley.com/doi/10.1002/...
#LatestIssue #PlantScience
SPaRTA: Spatial Reasoning in Text-to-SQL for Omics Analysis https://www.biorxiv.org/content/10.64898/2026.10.31.763119v1
November 4, 2026 at 10:47 AM
SPaRTA: Spatial Reasoning in Text-to-SQL for Omics Analysis https://www.biorxiv.org/content/10.64898/2026.10.31.763119v1
📝 Can AI Decode Glycolysis Enzymes By Their Moonlight?
✍️ Omics! Omics!
✍️ Omics! Omics!
Can AI Decode Glycolysis Enzymes By Their Moonlight?
Article de Omics! Omics!
omicsomics.blogspot.com
November 4, 2026 at 8:20 AM
📝 Can AI Decode Glycolysis Enzymes By Their Moonlight?
✍️ Omics! Omics!
✍️ Omics! Omics!
🧬 Omics technologies are opening new possibilities for precision #cancer medicine.
Through @jane2project.bsky.social, @sciensano.be leads the European Network of Expertise on Omics Technologies, helping address the barriers to their integration into clinical practice across Europe. #EU4Health
Through @jane2project.bsky.social, @sciensano.be leads the European Network of Expertise on Omics Technologies, helping address the barriers to their integration into clinical practice across Europe. #EU4Health
November 3, 2026 at 11:12 AM
🧬 Omics technologies are opening new possibilities for precision #cancer medicine.
Through @jane2project.bsky.social, @sciensano.be leads the European Network of Expertise on Omics Technologies, helping address the barriers to their integration into clinical practice across Europe. #EU4Health
Through @jane2project.bsky.social, @sciensano.be leads the European Network of Expertise on Omics Technologies, helping address the barriers to their integration into clinical practice across Europe. #EU4Health
Delighted to share our new review in @molecology.bsky.social, led by @bellareeves.bsky.social & @sebasalco.bsky.social 🐋
“Advancing marine mammal conservation through omics tools and integration of Indigenous Ecological Knowledge”
onlinelibrary.wiley.com/doi/10.1111/...
#marmam #consgen #popgen
🧵
“Advancing marine mammal conservation through omics tools and integration of Indigenous Ecological Knowledge”
onlinelibrary.wiley.com/doi/10.1111/...
#marmam #consgen #popgen
🧵
Advancing Marine Mammal Conservation Through Omics Tools and Integration of Indigenous Ecological Knowledge
Conservation of biodiversity is a global priority as human-driven pressures continue to intensify and alter ecosystems worldwide. Marine mammals are vulnerable species, facing numerous escalating ant...
onlinelibrary.wiley.com
November 2, 2026 at 12:22 PM
Delighted to share our new review in @molecology.bsky.social, led by @bellareeves.bsky.social & @sebasalco.bsky.social 🐋
“Advancing marine mammal conservation through omics tools and integration of Indigenous Ecological Knowledge”
onlinelibrary.wiley.com/doi/10.1111/...
#marmam #consgen #popgen
🧵
“Advancing marine mammal conservation through omics tools and integration of Indigenous Ecological Knowledge”
onlinelibrary.wiley.com/doi/10.1111/...
#marmam #consgen #popgen
🧵
Liberalism is a hell of a drug bsky.app/profile/aunt...
November 5, 2026 at 8:57 PM
Liberalism is a hell of a drug bsky.app/profile/aunt...
How can ridge redundancy analysis scale to omics?
Fresh from bioRxiv: Ridge RDA for high-dimensional omics uses Singular Value Decomposition of the predictor matrix X to avoid covariance inversion and enable efficient joint tuning of r and {lambda}.
#bioRxiv
doi.org/10.1101/2025.04.16.649138
Fresh from bioRxiv: Ridge RDA for high-dimensional omics uses Singular Value Decomposition of the predictor matrix X to avoid covariance inversion and enable efficient joint tuning of r and {lambda}.
#bioRxiv
doi.org/10.1101/2025.04.16.649138
Ridge Redundancy Analysis for High-Dimensional Omics Data
bioRxiv
jclub.com.au
November 5, 2026 at 1:43 AM
How can ridge redundancy analysis scale to omics?
Fresh from bioRxiv: Ridge RDA for high-dimensional omics uses Singular Value Decomposition of the predictor matrix X to avoid covariance inversion and enable efficient joint tuning of r and {lambda}.
#bioRxiv
doi.org/10.1101/2025.04.16.649138
Fresh from bioRxiv: Ridge RDA for high-dimensional omics uses Singular Value Decomposition of the predictor matrix X to avoid covariance inversion and enable efficient joint tuning of r and {lambda}.
#bioRxiv
doi.org/10.1101/2025.04.16.649138
Multi-omics integration reveals candidate genes and molecular mechanisms associated with resistance to sugarcane smut https://www.biorxiv.org/content/10.64898/2026.11.05.764367v1
November 6, 2026 at 10:32 PM
Multi-omics integration reveals candidate genes and molecular mechanisms associated with resistance to sugarcane smut https://www.biorxiv.org/content/10.64898/2026.11.05.764367v1
University of British Columbia is hiring:
Postdoctoral Research Fellow in Multi-Omics Biomarker Development for Endometrial Cancer
#postdoc #medicine #cancerresearch
Postdoctoral Research Fellow in Multi-Omics Biomarker Development for Endometrial Cancer
#postdoc #medicine #cancerresearch
November 8, 2026 at 10:57 AM
University of British Columbia is hiring:
Postdoctoral Research Fellow in Multi-Omics Biomarker Development for Endometrial Cancer
#postdoc #medicine #cancerresearch
Postdoctoral Research Fellow in Multi-Omics Biomarker Development for Endometrial Cancer
#postdoc #medicine #cancerresearch
Member publication alert:
Multi-omics identifies convergent genetic drivers of medial arterial calcification in chronic kidney disease
academic.oup.com/eurheartj/ad...
Multi-omics identifies convergent genetic drivers of medial arterial calcification in chronic kidney disease
academic.oup.com/eurheartj/ad...
Multi-omics identifies convergent genetic drivers of medial arterial calcification in chronic kidney disease
This editorial refers to ‘Transcription factor TBX2 is a key regulator of vascular calcification’, by S. Li et al., https://doi.org/10.1093/eurheartj/ehag7
academic.oup.com
November 8, 2026 at 9:22 PM
Member publication alert:
Multi-omics identifies convergent genetic drivers of medial arterial calcification in chronic kidney disease
academic.oup.com/eurheartj/ad...
Multi-omics identifies convergent genetic drivers of medial arterial calcification in chronic kidney disease
academic.oup.com/eurheartj/ad...
This type of ignorance was bought and paid for over the last 40 years of Regan-omics defunding education and supporting corporations over people.
November 8, 2026 at 2:25 PM
This type of ignorance was bought and paid for over the last 40 years of Regan-omics defunding education and supporting corporations over people.
Exciting #Postdoc opportunity in omics data science @ our Institute for Biomecidine #EuracResearch 👇 deadline Nov 30
Applications through our onboarding system:
eurac.onboard.org/jobs/6mOolrmM
Applications through our onboarding system:
eurac.onboard.org/jobs/6mOolrmM
November 2, 2026 at 3:18 PM
Exciting #Postdoc opportunity in omics data science @ our Institute for Biomecidine #EuracResearch 👇 deadline Nov 30
Applications through our onboarding system:
eurac.onboard.org/jobs/6mOolrmM
Applications through our onboarding system:
eurac.onboard.org/jobs/6mOolrmM
Extract: Research Fellow to study drought memory in soil microbial communities using isotopic tracers, lab/field experiments, and omics/ecological data integration.
November 7, 2026 at 5:54 AM
Extract: Research Fellow to study drought memory in soil microbial communities using isotopic tracers, lab/field experiments, and omics/ecological data integration.