At the #SnakemakeHackathon2026 in Munich last week I complied Snakemake to #Wasm and made a client-side webapp for creating and sharing workflows -> snakemake.github.io/snakemake-wa....
It has support for python, R, and a 32bit linux environment all running in your browser ❤️ 🐍
It has support for python, R, and a 32bit linux environment all running in your browser ❤️ 🐍
March 14, 2026 at 5:32 PM
At the #SnakemakeHackathon2026 in Munich last week I complied Snakemake to #Wasm and made a client-side webapp for creating and sharing workflows -> snakemake.github.io/snakemake-wa....
It has support for python, R, and a 32bit linux environment all running in your browser ❤️ 🐍
It has support for python, R, and a 32bit linux environment all running in your browser ❤️ 🐍
The #SnakemakeHackathon2026 just started! Lots of interesting topics. If you are curious: #snakemakhackathon or #snakemakehackathon2026 are your hashtags to follow. 😉
#reproduciblecomputing #OpenScience #datananalysis
#reproduciblecomputing #OpenScience #datananalysis
March 9, 2026 at 9:22 AM
The #SnakemakeHackathon2026 just started! Lots of interesting topics. If you are curious: #snakemakhackathon or #snakemakehackathon2026 are your hashtags to follow. 😉
#reproduciblecomputing #OpenScience #datananalysis
#reproduciblecomputing #OpenScience #datananalysis
Reporting in from the #SnakemakeHackathon2026 - we are at the Munich Data Science Center at TUM working on various improvements to Snakemake. On a personal note, it's been some 12 years since I made my first contributions to the codebase and it's nice to stay involved with this wonderful community.
March 13, 2026 at 6:55 PM
Reporting in from the #SnakemakeHackathon2026 - we are at the Munich Data Science Center at TUM working on various improvements to Snakemake. On a personal note, it's been some 12 years since I made my first contributions to the codebase and it's nice to stay involved with this wonderful community.
Today, the #SnakemakeHackathon2026 at the TU Munich ended with the release of Snakemake 9.17! I want to thank all participants and my co-organizers! You have been incredibly dedicated and we improved a ton of things throughout the ecosystem.
March 13, 2026 at 7:54 PM
Today, the #SnakemakeHackathon2026 at the TU Munich ended with the release of Snakemake 9.17! I want to thank all participants and my co-organizers! You have been incredibly dedicated and we improved a ton of things throughout the ecosystem.
The third day of the #SnakemakeHackathon2026 at #TUM is about to end. We were very productive and I have merged over 20 pull requests that fix various bugs, clean up code, add new functionality and improvide user as well as developer experience. Thanks a lot to all the participants!
March 11, 2026 at 5:15 PM
The third day of the #SnakemakeHackathon2026 at #TUM is about to end. We were very productive and I have merged over 20 pull requests that fix various bugs, clean up code, add new functionality and improvide user as well as developer experience. Thanks a lot to all the participants!
2/3 accomplished ✅
Now, for a release a dependency has to be released with my two fixes, which have already been merged. Then, the world will see a new #nanopub application.
A #snakemakehackathon2026 result.
Now, for a release a dependency has to be released with my two fixes, which have already been merged. Then, the world will see a new #nanopub application.
A #snakemakehackathon2026 result.
March 17, 2026 at 7:18 PM
2/3 accomplished ✅
Now, for a release a dependency has to be released with my two fixes, which have already been merged. Then, the world will see a new #nanopub application.
A #snakemakehackathon2026 result.
Now, for a release a dependency has to be released with my two fixes, which have already been merged. Then, the world will see a new #nanopub application.
A #snakemakehackathon2026 result.
The #snakemakehackathon2026 has ended, we are still preparing our preprint release. But, our host has prepared a note on their homepage: https://go.tum.de/946236 🥳
#snakemake #reproduciblecomputing
#snakemake #reproduciblecomputing
Snakemake Hackathon 2026 – faster and further improved reproducible data analysis
Snakemake Hackathon 2026 delivers even faster and further improved support for reproducible data analysis. The 2026 Snakemake Hackathon brought together about 40 experts in Munich to deliver major improvements, new features, and performance enhancements for reproducible data analysis. Their community driven work strengthens Snakemake’s scalability, usability, and support for modern scientific workflows.
www.mdsi.tum.de
March 30, 2026 at 2:17 PM
The #snakemakehackathon2026 has ended, we are still preparing our preprint release. But, our host has prepared a note on their homepage: https://go.tum.de/946236 🥳
#snakemake #reproduciblecomputing
#snakemake #reproduciblecomputing
New blog post: https://blogs.fediscience.org/rupture-de-catenaire/2026/08/09/the-2nd-snakemake-hackathon/
My reflections on the latest #snakemakehackathon2026 . A little late, but nevertheless.
If you want to comment, please do so under the article. Only there comments will be persistent […]
My reflections on the latest #snakemakehackathon2026 . A little late, but nevertheless.
If you want to comment, please do so under the article. Only there comments will be persistent […]
Original post on fediscience.org
fediscience.org
August 9, 2026 at 7:54 PM
New blog post: https://blogs.fediscience.org/rupture-de-catenaire/2026/08/09/the-2nd-snakemake-hackathon/
My reflections on the latest #snakemakehackathon2026 . A little late, but nevertheless.
If you want to comment, please do so under the article. Only there comments will be persistent […]
My reflections on the latest #snakemakehackathon2026 . A little late, but nevertheless.
If you want to comment, please do so under the article. Only there comments will be persistent […]
This cannot be:
I am trying to compile a few stats for the #snakemake executor plugin for #Slurm on #hpc systems. Preparing for a lighting talk at the #snakemakehackathon2026
PyPi: 20,000 downloads last month
BioConda: > 60,000 total (aggregated over all versions)
Impressive as it might be […]
I am trying to compile a few stats for the #snakemake executor plugin for #Slurm on #hpc systems. Preparing for a lighting talk at the #snakemakehackathon2026
PyPi: 20,000 downloads last month
BioConda: > 60,000 total (aggregated over all versions)
Impressive as it might be […]
Original post on fediscience.org
fediscience.org
March 8, 2026 at 2:15 PM
This cannot be:
I am trying to compile a few stats for the #snakemake executor plugin for #Slurm on #hpc systems. Preparing for a lighting talk at the #snakemakehackathon2026
PyPi: 20,000 downloads last month
BioConda: > 60,000 total (aggregated over all versions)
Impressive as it might be […]
I am trying to compile a few stats for the #snakemake executor plugin for #Slurm on #hpc systems. Preparing for a lighting talk at the #snakemakehackathon2026
PyPi: 20,000 downloads last month
BioConda: > 60,000 total (aggregated over all versions)
Impressive as it might be […]
All in all, the last year has been eventful. Not so much new functionality, but accounting for LOTS of exceptions on various clusters.
It is time to move forward at the #snakemakehackathon2026 !
It is time to move forward at the #snakemakehackathon2026 !
February 20, 2026 at 4:37 PM
All in all, the last year has been eventful. Not so much new functionality, but accounting for LOTS of exceptions on various clusters.
It is time to move forward at the #snakemakehackathon2026 !
It is time to move forward at the #snakemakehackathon2026 !
good luck to the hackers at #snakemakehackathon2026 !
March 12, 2026 at 6:24 AM
good luck to the hackers at #snakemakehackathon2026 !
RE: https://fediscience.org/@biohackrxiv/116477505622903440
Today, we published the summary (as a #biohackrxiv preprint) of the #snakemakehackathon2026 . All the accomplishments which contribute once more to improve the #snakemake "ecosystem" for #ReproducibleResearch & #dataanalysis .
Many […]
Today, we published the summary (as a #biohackrxiv preprint) of the #snakemakehackathon2026 . All the accomplishments which contribute once more to improve the #snakemake "ecosystem" for #ReproducibleResearch & #dataanalysis .
Many […]
April 27, 2026 at 5:29 PM
RE: https://fediscience.org/@biohackrxiv/116477505622903440
Today, we published the summary (as a #biohackrxiv preprint) of the #snakemakehackathon2026 . All the accomplishments which contribute once more to improve the #snakemake "ecosystem" for #ReproducibleResearch & #dataanalysis .
Many […]
Today, we published the summary (as a #biohackrxiv preprint) of the #snakemakehackathon2026 . All the accomplishments which contribute once more to improve the #snakemake "ecosystem" for #ReproducibleResearch & #dataanalysis .
Many […]
Did you know? We started to gather cluster profiles for Snakemake users in a little repo: https://github.com/snakemake/snakemake-cluster-profiles
They should serve as a template for others.
#hpc #snakemake #reproduciblecomputing #snakemakehackathon2026
They should serve as a template for others.
#hpc #snakemake #reproduciblecomputing #snakemakehackathon2026
GitHub - snakemake/snakemake-cluster-profiles: The snakemake-profiles repository is an effort to create configuration profiles for executing Snakemake in specific institutional cluster or compute environments. It is meant to complement the executor plugins, which are designed for specifying execution on general architectures such as SLURM, LSF, etc.
The snakemake-profiles repository is an effort to create configuration profiles for executing Snakemake in specific institutional cluster or compute environments. It is meant to complement the exec...
github.com
March 26, 2026 at 11:36 AM
Did you know? We started to gather cluster profiles for Snakemake users in a little repo: https://github.com/snakemake/snakemake-cluster-profiles
They should serve as a template for others.
#hpc #snakemake #reproduciblecomputing #snakemakehackathon2026
They should serve as a template for others.
#hpc #snakemake #reproduciblecomputing #snakemakehackathon2026
RE: https://fediscience.org/@snakemake/116245074392817916
Hm, I thought(!) that I fixed some issues with this bot. Appears not to be the case. Moreover, the `**docs** should be bold, not ignored. 🤦
Any way, this release is yet another leftover from the #snakemakehackathon2026 !
Hm, I thought(!) that I fixed some issues with this bot. Appears not to be the case. Moreover, the `**docs** should be bold, not ignored. 🤦
Any way, this release is yet another leftover from the #snakemakehackathon2026 !
fediscience.org
March 17, 2026 at 3:32 PM
RE: https://fediscience.org/@snakemake/116245074392817916
Hm, I thought(!) that I fixed some issues with this bot. Appears not to be the case. Moreover, the `**docs** should be bold, not ignored. 🤦
Any way, this release is yet another leftover from the #snakemakehackathon2026 !
Hm, I thought(!) that I fixed some issues with this bot. Appears not to be the case. Moreover, the `**docs** should be bold, not ignored. 🤦
Any way, this release is yet another leftover from the #snakemakehackathon2026 !
Personally, the week in Munich at the #snakemakehackathon2026 was really neat. I met friends and acquaintances, took the time to meet an old friend of mine not working in academia any more and the wonderful @FrankSonntag from #Fediscience association.
And now, tired, on my way back. Thanks to […]
And now, tired, on my way back. Thanks to […]
Original post on fediscience.org
fediscience.org
March 13, 2026 at 8:13 PM
Personally, the week in Munich at the #snakemakehackathon2026 was really neat. I met friends and acquaintances, took the time to meet an old friend of mine not working in academia any more and the wonderful @FrankSonntag from #Fediscience association.
And now, tired, on my way back. Thanks to […]
And now, tired, on my way back. Thanks to […]
RE: https://fediscience.org/@snakemake/116222696140712833
What a week at the #snakemakehackathon2026 !
What a wonderful week with wonderful people!
We were pretty productive and this #snakemake release is just a peak of it. The list of features, bug fixes, performance improvement and […]
What a week at the #snakemakehackathon2026 !
What a wonderful week with wonderful people!
We were pretty productive and this #snakemake release is just a peak of it. The list of features, bug fixes, performance improvement and […]
Original post on fediscience.org
fediscience.org
March 13, 2026 at 5:28 PM
RE: https://fediscience.org/@snakemake/116222696140712833
What a week at the #snakemakehackathon2026 !
What a wonderful week with wonderful people!
We were pretty productive and this #snakemake release is just a peak of it. The list of features, bug fixes, performance improvement and […]
What a week at the #snakemakehackathon2026 !
What a wonderful week with wonderful people!
We were pretty productive and this #snakemake release is just a peak of it. The list of features, bug fixes, performance improvement and […]
Finally, some personal progress: Thanks to @fbartusch a bug of the #Slurm executor plugin for Snakemake was fixed (dealing with nested quoting). A release is upcoming.
And: I generated my first (still faulty) test #nanopub from Snakemake 🥳
#snakemakehackathon2026
And: I generated my first (still faulty) test #nanopub from Snakemake 🥳
#snakemakehackathon2026
March 12, 2026 at 1:46 PM
Finally, some personal progress: Thanks to @fbartusch a bug of the #Slurm executor plugin for Snakemake was fixed (dealing with nested quoting). A release is upcoming.
And: I generated my first (still faulty) test #nanopub from Snakemake 🥳
#snakemakehackathon2026
And: I generated my first (still faulty) test #nanopub from Snakemake 🥳
#snakemakehackathon2026
Well, I did a release today:
https://fediscience.org/@snakemake/116097371050966872
And had a wonderful, productive discussion with co-developers. Looking eagerly forward to the #snakemakehackathon2026!
https://fediscience.org/@snakemake/116097371050966872
And had a wonderful, productive discussion with co-developers. Looking eagerly forward to the #snakemakehackathon2026!
fediscience.org
February 19, 2026 at 5:39 PM
Well, I did a release today:
https://fediscience.org/@snakemake/116097371050966872
And had a wonderful, productive discussion with co-developers. Looking eagerly forward to the #snakemakehackathon2026!
https://fediscience.org/@snakemake/116097371050966872
And had a wonderful, productive discussion with co-developers. Looking eagerly forward to the #snakemakehackathon2026!