To assess method accuracy, we compared the estimated proportions to the #RNAScope proportions for correlations and rmse 📈 #BisqueRNA and #hspe were the top performers 🏆
April 11, 2025 at 2:35 PM
To assess method accuracy, we compared the estimated proportions to the #RNAScope proportions for correlations and rmse 📈 #BisqueRNA and #hspe were the top performers 🏆
We ran #deconvolution on the 110 bulk RNA-seq samples, with six selected methods: #DWLS, #bisqueRNA, #MuSiC, #BayesPrism, #hspe, and #CIBERSORTx. The methods returned a wide range of proportion estimates 📊
April 11, 2025 at 2:35 PM
We ran #deconvolution on the 110 bulk RNA-seq samples, with six selected methods: #DWLS, #bisqueRNA, #MuSiC, #BayesPrism, #hspe, and #CIBERSORTx. The methods returned a wide range of proportion estimates 📊
CRAN removals: baseline BisqueRNA ccrs cds EAinference EMMAgeo FastSF FindIt GRIDCOPULA IntegratedMRF LMest MLCIRTwithin MLCOPULA MPTmultiverse MultiLCIRT NMRphasing PACLasso Rquefts ScorePlus TRMF #rstats
June 2, 2025 at 10:02 AM
CRAN removals: baseline BisqueRNA ccrs cds EAinference EMMAgeo FastSF FindIt GRIDCOPULA IntegratedMRF LMest MLCIRTwithin MLCOPULA MPTmultiverse MultiLCIRT NMRphasing PACLasso Rquefts ScorePlus TRMF #rstats
Removed from CRAN: baseline (1.3-5), BisqueRNA (1.0.5), ccrs (0.1.0), cds (1.0.4), cgaim (1.0.1), cta (1.3.0), EAinference (0.2.3), EMMAgeo (0.9.8), evclust (2.0.3), evreg (1.1.1), FastSF (0.1.1), FindIt (1.2.0), fuzzyreg (0.6.2), geospt (1.0-5), geosptdb (1.0-1)
June 2, 2025 at 1:38 PM
Removed from CRAN: baseline (1.3-5), BisqueRNA (1.0.5), ccrs (0.1.0), cds (1.0.4), cgaim (1.0.1), cta (1.3.0), EAinference (0.2.3), EMMAgeo (0.9.8), evclust (2.0.3), evreg (1.1.1), FastSF (0.1.1), FindIt (1.2.0), fuzzyreg (0.6.2), geospt (1.0-5), geosptdb (1.0-1)