#coexpression
To clarify this, we imaged host mRNAs and monitored their translation dynamics in living cells with and without Nsp1 coexpression.
October 30, 2026 at 10:28 PM
new paper: "GSEA and the coexpression network approach identify novel pathway connections of molecular processes affected in Porto-sinusoidal vascular disease" https://doi.org/10.1371/journal.pone.0347338

"a novel coordinated dysregulation in PSVD was […]

[Original post on social.edu.nl]
October 25, 2026 at 7:10 AM
#eNeuro: Homma, @tsawada.bsky.social, et al. developed uniSynK, a single-vector chemogenetic system that coordinates the expression of 2 functional components at an optimized ratio to reliably induce the enlargement of dendritic spines.
https://doi.org/10.1523/ENEURO.0157-26.2026
uniSynK: A Ratio-Optimized Bicistronic Chemically Induced Dimerization Tool for Robust Induction of Dendritic Spine Enlargement
Synaptic plasticity is widely implicated in learning and brain-state regulation. Although correlations between synaptic modifications and diverse brain functions have been extensively reported, establishing causality requires tools that can directly and selectively perturb synapses in vivo. Recently, the chemogenetic actuator SYNCit-K (SynK) enabled causal induction of dendritic spine enlargement and synaptic potentiation. However, SynK relies on the coexpression of two independent components delivered by separate viral vectors, making it difficult to reliably achieve appropriate expression levels of both components within the same neuron. Here, using neocortical dissociated cultures from mouse embryos of undetermined sex, we sought to develop a unified, single-vector version of SynK (uniSynK) that enables robust and safe induction of dendritic spine enlargement. We first found that each SynK component induces distinct, concentration-dependent abnormalities in neuronal morphology when overexpressed, underscoring the need for precise control of their expression ratio. To address this challenge, we engineered a single construct in which the two components are linked by internal ribosome entry site (IRES) variants with graded translational efficiencies. Systematic screening of IRES variants identified an optimized configuration that preferentially drives each component within its respective concentration range that preserves normal spine morphology. The optimized uniSynK efficiently induces dendritic spine enlargement while exhibiting fewer off-target morphological abnormalities than observed in the multivector system when expression levels were not properly controlled. By simplifying experimental design, this single-vector, ratio-optimized synaptic chemogenetic tool provides a practical and broadly applicable platform that should facilitate causal interrogation of synaptic plasticity across neural circuits and behavior.
doi.org
October 19, 2026 at 2:31 PM
#eNeuro | uniSynK: A Ratio-Optimized Bicistronic Chemically Induced Dimerization Tool for Robust Induction of Dendritic Spine Enlargement
https://doi.org/10.1523/ENEURO.0157-26.2026
uniSynK: A Ratio-Optimized Bicistronic Chemically Induced Dimerization Tool for Robust Induction of Dendritic Spine Enlargement
Synaptic plasticity is widely implicated in learning and brain-state regulation. Although correlations between synaptic modifications and diverse brain functions have been extensively reported, establishing causality requires tools that can directly and selectively perturb synapses in vivo. Recently, the chemogenetic actuator SYNCit-K (SynK) enabled causal induction of dendritic spine enlargement and synaptic potentiation. However, SynK relies on the coexpression of two independent components delivered by separate viral vectors, making it difficult to reliably achieve appropriate expression levels of both components within the same neuron. Here, using neocortical dissociated cultures from mouse embryos of undetermined sex, we sought to develop a unified, single-vector version of SynK (uniSynK) that enables robust and safe induction of dendritic spine enlargement. We first found that each SynK component induces distinct, concentration-dependent abnormalities in neuronal morphology when overexpressed, underscoring the need for precise control of their expression ratio. To address this challenge, we engineered a single construct in which the two components are linked by internal ribosome entry site (IRES) variants with graded translational efficiencies. Systematic screening of IRES variants identified an optimized configuration that preferentially drives each component within its respective concentration range that preserves normal spine morphology. The optimized uniSynK efficiently induces dendritic spine enlargement while exhibiting fewer off-target morphological abnormalities than observed in the multivector system when expression levels were not properly controlled. By simplifying experimental design, this single-vector, ratio-optimized synaptic chemogenetic tool provides a practical and broadly applicable platform that should facilitate causal interrogation of synaptic plasticity across neural circuits and behavior.
doi.org
October 16, 2026 at 8:24 PM
Genes with significantly correlated presence/absence have higher than expected coexpression & GO term overlap & the bulk of the signal was gene pairs from different chromosomes, suggesting their functional relationship shapes pangenomic variation. 3/
October 11, 2026 at 5:31 PM
Using Kehan Zhao’s dataset of loss-of-function variants across ~1000 Arabidopsis accessions (companion paper here) we found thousands of gene pairs with correlated functional states. These pairs have higher coexpression & GO overlap than expected by chance, & mostly lie on different chromosomes 2/
doi.org
October 11, 2026 at 5:31 PM
🧬 Our Network Analysis in Systems Biology with R & Bioconductor course, led by @almeidasilvaf.bsky.social l, is underway! Participants are learning to infer, compare & interpret gene coexpression and regulatory networks from RNA-seq data
www.physalia-courses.org/courses-work...
October 5, 2026 at 12:21 PM
Join us and learn to infer & analyse gene coexpression and regulatory networks, compare networks, and integrate genomic data for gene discovery. 💻
September 22, 2026 at 12:50 PM
Ophthopedia Update: Coexpression of IGF1R and TSHR in extraocular muscles of patients with thyroid-associated orbitopathy: Background/aims

To explore the roles of insulin-like growth factor 1 receptor (IGF1R) and thyroid-stimulating hormone receptor (TSHR) in… #Ophthalmology #Ophthotwitter #BJO
Coexpression of IGF1R and TSHR in extraocular muscles of patients with thyroid-associated orbitopathy
Background/aims To explore the roles of insulin-like growth factor 1 receptor (IGF1R) and thyroid-stimulating hormone receptor (TSHR) in extraocular muscle pathology.Methods Extraocular muscle specimens were obtained during rectus muscle myectomy surgeries performed for large-angle strabismus correction in patients with thyroid-associated orbitopathy (TAO) and during rectus muscle resection surgeries performed for congenital strabismus in normal controls. Immunohistochemistry was employed to detect and compare between-group IGF1R and TSHR expression; ImageJ software was used to assess the staining area and H&E staining was used to evaluate morphological differences in tissues. Intergroup comparisons were conducted using the Mann-Whitney U test.Results Histological examination of the extraocular muscle specimens revealed greater fibrosis in the TAO group (n=12) than in the control group (n=6). Immunohistochemistry (IHC) revealed significantly higher expression of both IGF1R and TSHR in the TAO group, particularly in elongated fibroblast-like cells and some myocytes, than in the control group, which exhibited minimal expression. Semiquantitative analysis confirmed significantly larger mean expression areas for IGF1R and TSHR in the TAO group than in the control group (p
dlvr.it
September 18, 2026 at 4:42 PM
Odorant receptor coexpression and multi-expression in the dengue mosquito
#Drosophila
Odorant receptor coexpression and multi-expression in the dengue mosquito #Drosophila
PubMed link
pubmed.ncbi.nlm.nih.gov
September 15, 2026 at 10:23 AM
Gene function prediction from bulk coexpression is bounded by cell-type-level signal https://www.biorxiv.org/content/10.64898/2026.08.31.748380v1
September 4, 2026 at 1:46 PM
Gene function prediction from bulk coexpression is bounded by cell-type-level signal https://www.biorxiv.org/content/10.64898/2026.08.31.748380v1
September 4, 2026 at 1:46 PM
Why could this be useful? We see cross-species coexpression (as implemented in CoExpPhylo) as a very powerful tool for future discoveries in the specialized plant metabolism, but you need big data to run it: doi.org/10.1186/s128...
September 4, 2026 at 8:49 AM
OMICON: a community resource for studying gene coexpression networks in normal and neoplastic human brain samples https://www.biorxiv.org/content/10.64898/2026.08.25.747141v1
September 1, 2026 at 8:15 PM
OMICON: a community resource for studying gene coexpression networks in normal and neoplastic human brain samples https://www.biorxiv.org/content/10.64898/2026.08.25.747141v1
September 1, 2026 at 8:15 PM
Coexpression, colexification, cogrammification: Three new terms of comparative linguistics and what they (might) mean
https://dlc.hypotheses.org/4439

"Everyone knows that linguistic forms often (seem to) have multiple meanings: Sentences may be ambigu..."
Coexpression, colexification, cogrammification: Three new terms of comparative linguistics and what they (might) mean
Everyone knows that linguistic forms often (seem to) have multiple meanings: Sentences may be ambiguous, words often exhibit polysemy, they may be homonymous, and grammatical markers can have a range of uses. But more recently, two additional terms have become widespread in comparative approaches: colexification (the possibility of using a word with different senses) and…
dlc.hypotheses.org
August 25, 2026 at 8:51 AM
6/14 we demonstrate that both pathways contribute to tumor control and that coexpression of both MHC-I and MHC-II on the same vaccine-delivered DC1 is required for robust therapeutic efficacy, with additional support from host DC1s. We also found that host DC1s support the efficacy of vaccination
August 20, 2026 at 7:54 PM
New paper from the lab:
Bianca Morejon defines the regulatory protease network that governs #mosquito #immunity
www.pnas.org/doi/10.1073/...
The expanded immunoregulatory protease network in mosquitoes is governed by gene coexpression | PNAS
Serine protease cascades regulate key innate immune responses. Their activation cleaves a series of inactive protease zymogens, which then activate...
www.pnas.org
May 2, 2025 at 3:02 PM
Potato gene coexpression network and resources paper from Buell lab #PlantScience
Just out: results from our ongoing potato genetics project are now up as a preprint!
An allelic resolution gene atlas for tetraploid potato provides insights into tuberization and stress resilience https://www.biorxiv.org/content/10.1101/2025.06.26.661617v1
June 27, 2025 at 7:55 PM