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AbstractBackground. Predicting phenotypes from genetic variation is foundational for fields as diverse as bioengineering and global change biology, highlig

The input data of deepBreaks is a Multiple Sequence Alignment (MSA) file containing \({X}_{i}=({x}_{i1},{x}_{i2},...,{x}_{im})\), \(i\in \{\text{1,2},...,n\}\), n sequences of length \(m\) and a phenotypic metadata, with a vector of size n, and \({\pi }_{i}\) s, as phenotypes which are related...