segger j-link because she’s classy
July 20, 2025 at 7:53 AM
segger j-link because she’s classy
1/ New preprint! 🍳
@elihei.bsky.social and our team at @embl.org , @dkfz.bsky.social, and @mskcancercenter.bsky.social built #segger - a fast, accurate cell segmentation tool for spatial transcriptomics that assigns transcripts to their cell origins!
doi.org/10.1101/2025...
@elihei.bsky.social and our team at @embl.org , @dkfz.bsky.social, and @mskcancercenter.bsky.social built #segger - a fast, accurate cell segmentation tool for spatial transcriptomics that assigns transcripts to their cell origins!
doi.org/10.1101/2025...
March 18, 2025 at 2:48 PM
1/ New preprint! 🍳
@elihei.bsky.social and our team at @embl.org , @dkfz.bsky.social, and @mskcancercenter.bsky.social built #segger - a fast, accurate cell segmentation tool for spatial transcriptomics that assigns transcripts to their cell origins!
doi.org/10.1101/2025...
@elihei.bsky.social and our team at @embl.org , @dkfz.bsky.social, and @mskcancercenter.bsky.social built #segger - a fast, accurate cell segmentation tool for spatial transcriptomics that assigns transcripts to their cell origins!
doi.org/10.1101/2025...
das kann man sich nicht ausdenken 😭
September 7, 2026 at 8:03 PM
das kann man sich nicht ausdenken 😭
"“At SEGGER, we see #rustlang becoming a more and more popular programming language,” says Rolf Segger, Founder of SEGGER."
www.segger.com/news/pr-2409...
www.segger.com/news/pr-2409...
SEGGER’s Ozone debugger now supports Rust
Ozone, SEGGER’s full-featured graphical debugger and performance analyzer, now supports the Rust programming language. More on segger.com
www.segger.com
September 30, 2024 at 5:20 PM
"“At SEGGER, we see #rustlang becoming a more and more popular programming language,” says Rolf Segger, Founder of SEGGER."
www.segger.com/news/pr-2409...
www.segger.com/news/pr-2409...
TIL Segger is named after its founder
September 30, 2024 at 6:04 PM
TIL Segger is named after its founder
From great collaborations come great things. Excited to share Segger, the solution to segmentation of spatial transcriptomics (ST) data, with the @steglelab.bsky.social and @moritzgerstung.bsky.social labs, spearheaded by the great Andrew Moorman and Elyas Heidari www.biorxiv.org/content/10.1...
Segger: Fast and accurate cell segmentation of imaging-based spatial transcriptomics data
The accurate assignment of transcripts to their cells of origin remains the Achilles heel of imaging-based spatial transcriptomics, despite being critical for nearly all downstream analyses. Current c...
www.biorxiv.org
March 20, 2025 at 11:40 AM
From great collaborations come great things. Excited to share Segger, the solution to segmentation of spatial transcriptomics (ST) data, with the @steglelab.bsky.social and @moritzgerstung.bsky.social labs, spearheaded by the great Andrew Moorman and Elyas Heidari www.biorxiv.org/content/10.1...
Spatial transcriptomics holds great promise to understand biological tissue function, but the assignment of transcripts to cells has been a substantial bottleneck.
For this reason, Elyas Heidari, a student in my lab and in @steglelab.bsky.social built segger.
www.biorxiv.org/content/10.1...
For this reason, Elyas Heidari, a student in my lab and in @steglelab.bsky.social built segger.
www.biorxiv.org/content/10.1...
March 17, 2025 at 4:19 PM
Spatial transcriptomics holds great promise to understand biological tissue function, but the assignment of transcripts to cells has been a substantial bottleneck.
For this reason, Elyas Heidari, a student in my lab and in @steglelab.bsky.social built segger.
www.biorxiv.org/content/10.1...
For this reason, Elyas Heidari, a student in my lab and in @steglelab.bsky.social built segger.
www.biorxiv.org/content/10.1...
Why is there a segger jlink and a tigard you may ask? because the tigard is the only 1.8v usb tty device I had within arms reach when I set it up
June 4, 2025 at 11:28 PM
Why is there a segger jlink and a tigard you may ask? because the tigard is the only 1.8v usb tty device I had within arms reach when I set it up
Woody Guthrie & Sonny Terry - All You Fascist Bound To Lose (1944)
Woody Guthrie : Vocals, Guitar
Sonny Terry : Harmonica, Vocal "Whoops"
Cisco Houston : Guitar
Pete Segger : Banjo
youtube.com/watch?v=nIOH...
Woody Guthrie : Vocals, Guitar
Sonny Terry : Harmonica, Vocal "Whoops"
Cisco Houston : Guitar
Pete Segger : Banjo
youtube.com/watch?v=nIOH...
July 13, 2026 at 11:20 PM
Woody Guthrie & Sonny Terry - All You Fascist Bound To Lose (1944)
Woody Guthrie : Vocals, Guitar
Sonny Terry : Harmonica, Vocal "Whoops"
Cisco Houston : Guitar
Pete Segger : Banjo
youtube.com/watch?v=nIOH...
Woody Guthrie : Vocals, Guitar
Sonny Terry : Harmonica, Vocal "Whoops"
Cisco Houston : Guitar
Pete Segger : Banjo
youtube.com/watch?v=nIOH...
Das IGH-Gutachten könnte die globale Klimagovernance grundlegend ändern. Herzlichen Dank an @verfassungsblog.de 's Dr @maximb.bsky.social fuer tolle Fragen an @tejasrao.bsky.social, @mccordonier.bsky.social und mich. @cambridgelaw.bsky.social
verfassungsblog.de/das-igh-guta...
verfassungsblog.de/das-igh-guta...
„Das IGH-Gutachten könnte die globale Klimagovernance grundlegend ändern.“: Fünf Fragen an Tejas Rao, Marie-Claire Cordonier Segger und Markus Gehring
Fünf Fragen an Tejas Rao, Marie-Claire Cordonier Segger and Markus Gehring
verfassungsblog.de
December 9, 2024 at 11:34 AM
Das IGH-Gutachten könnte die globale Klimagovernance grundlegend ändern. Herzlichen Dank an @verfassungsblog.de 's Dr @maximb.bsky.social fuer tolle Fragen an @tejasrao.bsky.social, @mccordonier.bsky.social und mich. @cambridgelaw.bsky.social
verfassungsblog.de/das-igh-guta...
verfassungsblog.de/das-igh-guta...
Since Monday, the ICJ has been holding hearings in what has been described as “the world’s biggest legal case” 🌐⚖️
We spoke with Tejas Rao, Marie-Claire Cordonier Segger, and Markus Gehring about what the landmark ICJ climate hearings are all about.
verfassungsblog.de/the-advisory...
We spoke with Tejas Rao, Marie-Claire Cordonier Segger, and Markus Gehring about what the landmark ICJ climate hearings are all about.
verfassungsblog.de/the-advisory...
December 8, 2024 at 12:19 PM
Since Monday, the ICJ has been holding hearings in what has been described as “the world’s biggest legal case” 🌐⚖️
We spoke with Tejas Rao, Marie-Claire Cordonier Segger, and Markus Gehring about what the landmark ICJ climate hearings are all about.
verfassungsblog.de/the-advisory...
We spoke with Tejas Rao, Marie-Claire Cordonier Segger, and Markus Gehring about what the landmark ICJ climate hearings are all about.
verfassungsblog.de/the-advisory...
Segger: Fast and accurate cell segmentation of imaging-based spatial transcriptomics data www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/EliHei2/segg...
March 19, 2025 at 8:00 PM
Segger: Fast and accurate cell segmentation of imaging-based spatial transcriptomics data www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/EliHei2/segg...
These are great reflections. Benefits I see that stem from the Climate Change AO are:
1, negotiating in the shadow of the law. The ICJ is likely to create a framework within which UNFCC negs should happen +
verfassungsblog.de/the-advisory...
1, negotiating in the shadow of the law. The ICJ is likely to create a framework within which UNFCC negs should happen +
verfassungsblog.de/the-advisory...
“The Advisory Opinion Could Reshape Global Climate Governance.”: Five Questions to Tejas Rao, Marie-Claire Cordonier Segger and Markus Gehring
Five Questions to Tejas Rao, Marie-Claire Cordonier Segger and Markus Gehring
verfassungsblog.de
December 10, 2024 at 1:23 AM
These are great reflections. Benefits I see that stem from the Climate Change AO are:
1, negotiating in the shadow of the law. The ICJ is likely to create a framework within which UNFCC negs should happen +
verfassungsblog.de/the-advisory...
1, negotiating in the shadow of the law. The ICJ is likely to create a framework within which UNFCC negs should happen +
verfassungsblog.de/the-advisory...
Imaging-based #SpatialTranscriptomics #Segmentation
Segger
👉Attention #GraphNeuralNetwork
👉Learn a transcript-cell joint latent space
👉Unassigned transcripts➡️fragments➡️
median 20 transcripts/fragment vs 50 /cell
vs Baysor BIDCell CellPose 10Xprotocol
bioRxiv 2025
www.biorxiv.org/content/10.1...
Segger
👉Attention #GraphNeuralNetwork
👉Learn a transcript-cell joint latent space
👉Unassigned transcripts➡️fragments➡️
median 20 transcripts/fragment vs 50 /cell
vs Baysor BIDCell CellPose 10Xprotocol
bioRxiv 2025
www.biorxiv.org/content/10.1...
April 22, 2025 at 11:59 AM
Imaging-based #SpatialTranscriptomics #Segmentation
Segger
👉Attention #GraphNeuralNetwork
👉Learn a transcript-cell joint latent space
👉Unassigned transcripts➡️fragments➡️
median 20 transcripts/fragment vs 50 /cell
vs Baysor BIDCell CellPose 10Xprotocol
bioRxiv 2025
www.biorxiv.org/content/10.1...
Segger
👉Attention #GraphNeuralNetwork
👉Learn a transcript-cell joint latent space
👉Unassigned transcripts➡️fragments➡️
median 20 transcripts/fragment vs 50 /cell
vs Baysor BIDCell CellPose 10Xprotocol
bioRxiv 2025
www.biorxiv.org/content/10.1...
segger?
i hardly know 'er!
i hardly know 'er!
who want their protogussy debugged
June 11, 2023 at 5:38 PM
segger?
i hardly know 'er!
i hardly know 'er!
If you work with Xenium data segmentation, you may want to check out Segger!
Segger provides accurate and scalable segmentation for IIS and FISH-based spatial omics datasets, using a novel heterogenous GNN approach.
Authors: elihei.bsky.social and Andrew Moorman.
Segger provides accurate and scalable segmentation for IIS and FISH-based spatial omics datasets, using a novel heterogenous GNN approach.
Authors: elihei.bsky.social and Andrew Moorman.
March 26, 2025 at 1:22 PM
If you work with Xenium data segmentation, you may want to check out Segger!
Segger provides accurate and scalable segmentation for IIS and FISH-based spatial omics datasets, using a novel heterogenous GNN approach.
Authors: elihei.bsky.social and Andrew Moorman.
Segger provides accurate and scalable segmentation for IIS and FISH-based spatial omics datasets, using a novel heterogenous GNN approach.
Authors: elihei.bsky.social and Andrew Moorman.
Preparing for Week 2 of the ICJ hearings and need a quick brief of what's at stake & why? Here are some thoughts, authored with @mwgehring.bsky.social and Marie-Claire Cordonier Segger in response to questions from @verfassungsblog.de.
Since Monday, the ICJ has been holding hearings in what has been described as “the world’s biggest legal case” 🌐⚖️
We spoke with Tejas Rao, Marie-Claire Cordonier Segger, and Markus Gehring about what the landmark ICJ climate hearings are all about.
verfassungsblog.de/the-advisory...
We spoke with Tejas Rao, Marie-Claire Cordonier Segger, and Markus Gehring about what the landmark ICJ climate hearings are all about.
verfassungsblog.de/the-advisory...
December 8, 2024 at 8:56 PM
Preparing for Week 2 of the ICJ hearings and need a quick brief of what's at stake & why? Here are some thoughts, authored with @mwgehring.bsky.social and Marie-Claire Cordonier Segger in response to questions from @verfassungsblog.de.
Warmest congratulations to Prof @mccordonier.bsky.social on her Impact Maker award by the UNFCCC High Level Champions. @demedglobal.bsky.social @cisdl.bsky.social @lauterpachtcentre.bsky.social @lucycavcoll.bsky.social @cam.ac.uk @cambridgezero.bsky.social
www.climatechampions.net/news/impact-...
www.climatechampions.net/news/impact-...
Impact Makers: Prof. Marie-Claire Cordonier Segger
Shaping global climate law for future generations
www.climatechampions.net
October 17, 2025 at 10:11 PM
Warmest congratulations to Prof @mccordonier.bsky.social on her Impact Maker award by the UNFCCC High Level Champions. @demedglobal.bsky.social @cisdl.bsky.social @lauterpachtcentre.bsky.social @lucycavcoll.bsky.social @cam.ac.uk @cambridgezero.bsky.social
www.climatechampions.net/news/impact-...
www.climatechampions.net/news/impact-...
Laws and governance of climate change is essential going forward and necessary for full Paris Agreement implementation says Prof Marie-Claire Cordonier Segger at the Hungarian Parliament. @lauterpachtcentre.bsky.social @cambridgelaw.bsky.social @demedglobal.bsky.social @cisdl.bsky.social
June 6, 2025 at 10:10 AM
Laws and governance of climate change is essential going forward and necessary for full Paris Agreement implementation says Prof Marie-Claire Cordonier Segger at the Hungarian Parliament. @lauterpachtcentre.bsky.social @cambridgelaw.bsky.social @demedglobal.bsky.social @cisdl.bsky.social
@elihei.bsky.social is gonna present our new tool segger, developed in collaboration with Moritz Gerstung and @danapeer.bsky.social, for fast and accurate segmentation of spatial transcriptomics using attention-based graph neural networks. #MLCSB
📅 July 22 | 🕑 15:50 | 📍 Room 01A
📅 July 22 | 🕑 15:50 | 📍 Room 01A
July 19, 2025 at 5:33 PM
@elihei.bsky.social is gonna present our new tool segger, developed in collaboration with Moritz Gerstung and @danapeer.bsky.social, for fast and accurate segmentation of spatial transcriptomics using attention-based graph neural networks. #MLCSB
📅 July 22 | 🕑 15:50 | 📍 Room 01A
📅 July 22 | 🕑 15:50 | 📍 Room 01A
Accurate cell segmentation remains a major issue for spatial transcriptomics.
Elyas Heidari and colleagues from the Gerstung, Pe'er and Stegle Labs released Segger, a new algorithm that uses GNN to model both transcripts and cells. More details in their preprint: www.biorxiv.org/content/10.1...
Elyas Heidari and colleagues from the Gerstung, Pe'er and Stegle Labs released Segger, a new algorithm that uses GNN to model both transcripts and cells. More details in their preprint: www.biorxiv.org/content/10.1...
Segger: Fast and accurate cell segmentation of imaging-based spatial transcriptomics data
The accurate assignment of transcripts to their cells of origin remains the Achilles heel of imaging-based spatial transcriptomics, despite being critical for nearly all downstream analyses. Current c...
www.biorxiv.org
March 17, 2025 at 12:06 PM
Accurate cell segmentation remains a major issue for spatial transcriptomics.
Elyas Heidari and colleagues from the Gerstung, Pe'er and Stegle Labs released Segger, a new algorithm that uses GNN to model both transcripts and cells. More details in their preprint: www.biorxiv.org/content/10.1...
Elyas Heidari and colleagues from the Gerstung, Pe'er and Stegle Labs released Segger, a new algorithm that uses GNN to model both transcripts and cells. More details in their preprint: www.biorxiv.org/content/10.1...
We urgently need climate courage, contributions and compliance, esp. by advancing international law for future generations and our natural world, says Prof. Marie-Claire Cordonier Segger @lauterpachtcentre.bsky.social @cam.ac.uk @lucycavcoll.bsky.social @demedglobal.bsky.social @cisdl.bsky.social
June 6, 2025 at 9:59 AM
We urgently need climate courage, contributions and compliance, esp. by advancing international law for future generations and our natural world, says Prof. Marie-Claire Cordonier Segger @lauterpachtcentre.bsky.social @cam.ac.uk @lucycavcoll.bsky.social @demedglobal.bsky.social @cisdl.bsky.social
Damit werden die Kinder endlich wieder mit gesunder Härte für das Leben erzogen! (Peter Ro(s)segger: Waldheimat)!
Im Schnee durch den Wald stapfen und 2-3 Stunden zur Schule laufen härtet jeden für das zukünftige Leben im grünen Herz(Schmerz?) ab!
Im Schnee durch den Wald stapfen und 2-3 Stunden zur Schule laufen härtet jeden für das zukünftige Leben im grünen Herz(Schmerz?) ab!
September 5, 2025 at 7:11 AM
Damit werden die Kinder endlich wieder mit gesunder Härte für das Leben erzogen! (Peter Ro(s)segger: Waldheimat)!
Im Schnee durch den Wald stapfen und 2-3 Stunden zur Schule laufen härtet jeden für das zukünftige Leben im grünen Herz(Schmerz?) ab!
Im Schnee durch den Wald stapfen und 2-3 Stunden zur Schule laufen härtet jeden für das zukünftige Leben im grünen Herz(Schmerz?) ab!
If you’re looking to get ready for the upcoming advisory opinion from the International Court of Justice ⚖️, be sure to check out our recent interview with @mwgehring.bsky.social, @tejasrao.bsky.social & Marie-Claire Cordonier Segger:
verfassungsblog.de/the-advisory...
verfassungsblog.de/the-advisory...
“The Advisory Opinion Could Reshape Global Climate Governance.”
verfassungsblog.de
July 9, 2025 at 12:16 PM
If you’re looking to get ready for the upcoming advisory opinion from the International Court of Justice ⚖️, be sure to check out our recent interview with @mwgehring.bsky.social, @tejasrao.bsky.social & Marie-Claire Cordonier Segger:
verfassungsblog.de/the-advisory...
verfassungsblog.de/the-advisory...