We’ve updated #CellTracksColab to adopt the #LabConstrictor format, making CellTracksColab easier to package and distribute on local installation.

If you want to understand how your cells move, give CellTracksColab a try, now directly on your own laptop or workstation! 💻

github.com/CellMigratio...

Final session where we finish our pipeline using #celltrackscolab with Laura Xénard.

ps: probably there's a module you can tweak or use as starting ground with github.com/CellMigratio...

Great talks and hands-on sessions at @v4sdb.bsky.social's Winter School 2025 in beautiful Budapest! 🤗 Yesterday, @jekely.biologists.social.ap.brid.gy and @jwpylvanainen.bsky.social guided us through CATMAID, TrackMate, and CellTracksColab. 🧫 More imaging data analysis and programming ahead! 🧑‍💻

The second day of the @v4sdb.bsky.social WinterSchool started again with @jekely.biologists.social.ap.brid.gy and some nice CATMAID-based analysis of the Platynereis connectome, followed by @jwpylvanainen.bsky.social talking about TrackMate and CellTracksColab (danio-elte.github.io/2025V4SDBStu...).

I am now adding a section "Manuscript preparation" in the material and methods of our manuscripts
See journals.plos.org/plosbiology/...

A little contribution on the line of image analysis pipelines that I find useful (inspired by @guijacquemet.bsky.social & @biovoxxel.bsky.social )

github.com/CellMigratio...

Do you work with cell migration data? Or do you track objects from microscopy video? You may be interested in my latest project:

CellTracksColab, A platform for compiling, analyzing, and exploring tracking data

www.biorxiv.org/content/10.1...

github.com/guijacquemet...

CellTracksColab, A platform for compiling, analyzing, and exploring tracking data https://www.biorxiv.org/content/10.1101/2023.10.20.563252v1

CellTracksColab, A platform for compiling, analyzing, and exploring tracking data https://www.biorxiv.org/content/10.1101/2023.10.20.563252v1