Our paper "Morphometry and mechanical instability at the onset of epithelial bladder cancer" is now out in
@naturephysics.bsky.social :
rdcu.be/d5rTP
#BladderCancer #Cancer #Tumor #Biomechanics #Morphometry #ComputationalModeling
@naturephysics.bsky.social :
rdcu.be/d5rTP
#BladderCancer #Cancer #Tumor #Biomechanics #Morphometry #ComputationalModeling
Morphometry and mechanical instability at the onset of epithelial bladder cancer
Nature Physics - Carcinoma subtypes are normally linked to specific genetic alterations, but tissue mechanical changes also play a role. Now, aberrant morphologies resembling bladder carcinoma are...
rdcu.be
January 7, 2025 at 12:00 PM
Our paper "Morphometry and mechanical instability at the onset of epithelial bladder cancer" is now out in
@naturephysics.bsky.social :
rdcu.be/d5rTP
#BladderCancer #Cancer #Tumor #Biomechanics #Morphometry #ComputationalModeling
@naturephysics.bsky.social :
rdcu.be/d5rTP
#BladderCancer #Cancer #Tumor #Biomechanics #Morphometry #ComputationalModeling
👀
Morphogenesis and morphometry of brain folding patterns across species | bioRxiv www.biorxiv.org/content/10.1...
Morphogenesis and morphometry of brain folding patterns across species | bioRxiv www.biorxiv.org/content/10.1...
November 11, 2025 at 1:17 AM
👀
Morphogenesis and morphometry of brain folding patterns across species | bioRxiv www.biorxiv.org/content/10.1...
Morphogenesis and morphometry of brain folding patterns across species | bioRxiv www.biorxiv.org/content/10.1...
What a beautiful cover for our #mechanobiology paper "Morphometry and mechanical instability at the onset of epithelial bladder cancer": doi.org/10.1038/s415... - thx @naturephysics.bsky.social !!
News & Views "Tissue wrinkles foreshadow cancer" doi.org/10.1038/s415...
News & Views "Tissue wrinkles foreshadow cancer" doi.org/10.1038/s415...
February 20, 2025 at 5:30 AM
What a beautiful cover for our #mechanobiology paper "Morphometry and mechanical instability at the onset of epithelial bladder cancer": doi.org/10.1038/s415... - thx @naturephysics.bsky.social !!
News & Views "Tissue wrinkles foreshadow cancer" doi.org/10.1038/s415...
News & Views "Tissue wrinkles foreshadow cancer" doi.org/10.1038/s415...
📢Out now! @codingfisch.bsky.social and colleagues present deepmriprep, a tool that leverages neural networks to enable 37x faster Voxel-based Morphometry preprocessing of MRI data than existing methods. www.nature.com/articles/s43... #compneurosky
deepmriprep: voxel-based morphometry preprocessing via deep neural networks - Nature Computational Science
deepmriprep leverages neural networks to enable voxel-based morphometry preprocessing of MRI data that is 37× faster than existing methods while achieving comparable accuracy in segmentation, registra...
www.nature.com
January 30, 2026 at 3:14 PM
📢Out now! @codingfisch.bsky.social and colleagues present deepmriprep, a tool that leverages neural networks to enable 37x faster Voxel-based Morphometry preprocessing of MRI data than existing methods. www.nature.com/articles/s43... #compneurosky
🧠 New preprint alert!
@carleton-cogsci.bsky.social PhD student Salah Aziz and our fantastic team tracked hippocampal changes over time in >1,300 individuals using surface-based morphometry (SBM).
Here's what we found—and why it matters for Alzheimer’s research 🧵
[1/]
@carleton-cogsci.bsky.social PhD student Salah Aziz and our fantastic team tracked hippocampal changes over time in >1,300 individuals using surface-based morphometry (SBM).
Here's what we found—and why it matters for Alzheimer’s research 🧵
[1/]
April 8, 2025 at 6:26 PM
🧠 New preprint alert!
@carleton-cogsci.bsky.social PhD student Salah Aziz and our fantastic team tracked hippocampal changes over time in >1,300 individuals using surface-based morphometry (SBM).
Here's what we found—and why it matters for Alzheimer’s research 🧵
[1/]
@carleton-cogsci.bsky.social PhD student Salah Aziz and our fantastic team tracked hippocampal changes over time in >1,300 individuals using surface-based morphometry (SBM).
Here's what we found—and why it matters for Alzheimer’s research 🧵
[1/]
New paper in Imaging Neuroscience by Clemens Pollak, Martin Reuter, et al:
FastSurfer-CC: A robust, accurate, and comprehensive framework for corpus callosum morphometry
doi.org/10.1162/IMAG...
FastSurfer-CC: A robust, accurate, and comprehensive framework for corpus callosum morphometry
doi.org/10.1162/IMAG...
May 11, 2026 at 6:52 AM
New paper in Imaging Neuroscience by Clemens Pollak, Martin Reuter, et al:
FastSurfer-CC: A robust, accurate, and comprehensive framework for corpus callosum morphometry
doi.org/10.1162/IMAG...
FastSurfer-CC: A robust, accurate, and comprehensive framework for corpus callosum morphometry
doi.org/10.1162/IMAG...
Fibroblast co-culture shapes Microvascular network on a chip
HUVEC/human adult lung fibroblast (5/1) in fibrin hydrogel➡️a sustained, arborized & perfusable microvasculature
Gravity-driven flow prunes the network 🤓
Void-based microvascular morphometry
bioRxiv 2025
www.biorxiv.org/content/10.1...
HUVEC/human adult lung fibroblast (5/1) in fibrin hydrogel➡️a sustained, arborized & perfusable microvasculature
Gravity-driven flow prunes the network 🤓
Void-based microvascular morphometry
bioRxiv 2025
www.biorxiv.org/content/10.1...
September 21, 2025 at 12:58 PM
Fibroblast co-culture shapes Microvascular network on a chip
HUVEC/human adult lung fibroblast (5/1) in fibrin hydrogel➡️a sustained, arborized & perfusable microvasculature
Gravity-driven flow prunes the network 🤓
Void-based microvascular morphometry
bioRxiv 2025
www.biorxiv.org/content/10.1...
HUVEC/human adult lung fibroblast (5/1) in fibrin hydrogel➡️a sustained, arborized & perfusable microvasculature
Gravity-driven flow prunes the network 🤓
Void-based microvascular morphometry
bioRxiv 2025
www.biorxiv.org/content/10.1...
Wonderful to be part of exciting Program at Harvard University & CMSA, Mathematics &Biology: Morphometry, Morphogenesis and Mathematics. Thank you 🙏🏼 and congrats to organizers for their invitation. Great to see and discuss with wonderful colleagues, not least @akankshi.bsky.social! 🤩
March 3, 2026 at 11:00 AM
Wonderful to be part of exciting Program at Harvard University & CMSA, Mathematics &Biology: Morphometry, Morphogenesis and Mathematics. Thank you 🙏🏼 and congrats to organizers for their invitation. Great to see and discuss with wonderful colleagues, not least @akankshi.bsky.social! 🤩
New #SkeletalMuscle paper: fishROI: a specialized workflow for semi-automated muscle morphometry analysis in teleosts. #Myoblue tinyurl.com/2p9rkp9z
Client Challenge
tinyurl.com
September 16, 2026 at 1:24 PM
New #SkeletalMuscle paper: fishROI: a specialized workflow for semi-automated muscle morphometry analysis in teleosts. #Myoblue tinyurl.com/2p9rkp9z
Neuronal diversity and stereotypy at multiple scales through whole brain morphometry
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Neuronal diversity and stereotypy at multiple scales through whole brain morphometry - Nature Communications
Here the authors analyzed 3.7 petavoxels of 3D imaging data from 204 mouse brains, aiming to comprehensively characterize diverse morphological and modular patterns conserved across six spatial scales...
www.nature.com
November 28, 2024 at 12:14 PM
Neuronal diversity and stereotypy at multiple scales through whole brain morphometry
www.nature.com/articles/s41...
www.nature.com/articles/s41...
When light hurts
www.nature.com/articles/s41...
"These results support the hypothesis that brainstem shrinkage/degeneration represents a morphological substrate of the photalgic sensitization of the trigeminal pathway"
www.nature.com/articles/s41...
"These results support the hypothesis that brainstem shrinkage/degeneration represents a morphological substrate of the photalgic sensitization of the trigeminal pathway"
When light hurts: Comparative Morphometry of Human Brainstem in Traumatic Photalgia - Scientific Reports
Scientific Reports - When light hurts: Comparative Morphometry of Human Brainstem in Traumatic Photalgia
www.nature.com
June 19, 2026 at 10:20 PM
When light hurts
www.nature.com/articles/s41...
"These results support the hypothesis that brainstem shrinkage/degeneration represents a morphological substrate of the photalgic sensitization of the trigeminal pathway"
www.nature.com/articles/s41...
"These results support the hypothesis that brainstem shrinkage/degeneration represents a morphological substrate of the photalgic sensitization of the trigeminal pathway"
Congratulations to Yansong Lu, the CMR's Avnika Ruparelia, and Pete Currie for their new paper, "fishROI: a specialized workflow for semi-automated muscle morphometry analysis in teleosts"
@armilabs.bsky.social
link.springer.com/article/10.1...
@armilabs.bsky.social
link.springer.com/article/10.1...
fishROI: a specialized workflow for semi-automated muscle morphometry analysis in teleosts - Skeletal Muscle
Background Quantitative histological analysis of skeletal muscle morphometry provides critical insights into muscle physiology but remains labor-intensive and technically demanding. While recent devel...
link.springer.com
September 17, 2026 at 5:58 AM
Congratulations to Yansong Lu, the CMR's Avnika Ruparelia, and Pete Currie for their new paper, "fishROI: a specialized workflow for semi-automated muscle morphometry analysis in teleosts"
@armilabs.bsky.social
link.springer.com/article/10.1...
@armilabs.bsky.social
link.springer.com/article/10.1...
Germann et al. propose a new deformation-based morphometry pipeline to measure longitudinal within-subject volumetric changes: doi.org/10.52294/001...
@fmri-today.bsky.social @mallarchak.bsky.social @ohbmofficial.bsky.social
@fmri-today.bsky.social @mallarchak.bsky.social @ohbmofficial.bsky.social
April 14, 2025 at 7:00 PM
Germann et al. propose a new deformation-based morphometry pipeline to measure longitudinal within-subject volumetric changes: doi.org/10.52294/001...
@fmri-today.bsky.social @mallarchak.bsky.social @ohbmofficial.bsky.social
@fmri-today.bsky.social @mallarchak.bsky.social @ohbmofficial.bsky.social
Analyse your teleost skeletal muscle section with fishROI - Now published: link.springer.com/article/10.1...
September 17, 2026 at 1:01 PM
Analyse your teleost skeletal muscle section with fishROI - Now published: link.springer.com/article/10.1...
MRI-based surface reconstruction and cortical thickness estimation of the human brain: Benchmarking deep-learning based morphometry tools | medRxiv www.medrxiv.org/content/10.1...
March 25, 2025 at 12:39 AM
MRI-based surface reconstruction and cortical thickness estimation of the human brain: Benchmarking deep-learning based morphometry tools | medRxiv www.medrxiv.org/content/10.1...
On behalf of the MAC Ecohydro Lab I'm happy to announce the winner of the 2024 #NobelPeatPrize for top Intl peat paper
Congrats to: Ehnvall et al.
Topography and time shape mire morphometry and large scale mire distribution patterns in the northern boreal landscape
JGR Earth Surface
#PeatSky
Congrats to: Ehnvall et al.
Topography and time shape mire morphometry and large scale mire distribution patterns in the northern boreal landscape
JGR Earth Surface
#PeatSky
December 5, 2024 at 1:06 PM
On behalf of the MAC Ecohydro Lab I'm happy to announce the winner of the 2024 #NobelPeatPrize for top Intl peat paper
Congrats to: Ehnvall et al.
Topography and time shape mire morphometry and large scale mire distribution patterns in the northern boreal landscape
JGR Earth Surface
#PeatSky
Congrats to: Ehnvall et al.
Topography and time shape mire morphometry and large scale mire distribution patterns in the northern boreal landscape
JGR Earth Surface
#PeatSky
New paper in Imaging Neuroscience by František Váša, Steven C.R. Williams, et al:
Ultra-low-field brain MRI morphometry: Test–retest reliability and correspondence to high-field MRI
doi.org/10.1162/IMAG...
Ultra-low-field brain MRI morphometry: Test–retest reliability and correspondence to high-field MRI
doi.org/10.1162/IMAG...
October 16, 2025 at 3:26 AM
New paper in Imaging Neuroscience by František Váša, Steven C.R. Williams, et al:
Ultra-low-field brain MRI morphometry: Test–retest reliability and correspondence to high-field MRI
doi.org/10.1162/IMAG...
Ultra-low-field brain MRI morphometry: Test–retest reliability and correspondence to high-field MRI
doi.org/10.1162/IMAG...
I am so looking forward to this CMSA workshop! An exciting line up of instructors and speakers and no fees 👀 Mathematics and Biology I: Morphometry, Morphogenesis and Mathematics - CMSA share.google/aTxvHO4dhYAg...
Mathematics and Biology I: Morphometry, Morphogenesis and Mathematics - CMSA
Mathematics and Biology I: Morphometry, Morphogenesis and Mathematics Dates: February 23–March 11, 2026 Location: Harvard CMSA, Room G10, 20 Garden Street, Cambridge MA Mathematics, Morphometry and Mo...
share.google
February 10, 2026 at 6:26 PM
I am so looking forward to this CMSA workshop! An exciting line up of instructors and speakers and no fees 👀 Mathematics and Biology I: Morphometry, Morphogenesis and Mathematics - CMSA share.google/aTxvHO4dhYAg...
📐 New in Bioinformatics Advances: "pykarambola: Minkowski tensor morphometry of 3D structures"
Read it here: https://doi.org/10.1093/bioadv/vbag273
Authors include: @ishiharaksk.bsky.social
Read it here: https://doi.org/10.1093/bioadv/vbag273
Authors include: @ishiharaksk.bsky.social
September 24, 2026 at 10:02 AM
📐 New in Bioinformatics Advances: "pykarambola: Minkowski tensor morphometry of 3D structures"
Read it here: https://doi.org/10.1093/bioadv/vbag273
Authors include: @ishiharaksk.bsky.social
Read it here: https://doi.org/10.1093/bioadv/vbag273
Authors include: @ishiharaksk.bsky.social
Proposal for the use of morphometry as a sexing method for psittacine species Amazona amazonica, Amazona aestiva, Ara chloropterus, Anodorhynchus hyacinthinus, and Ara ararauna | journals.sagepub.com... | Avian Biology Research | #ornithology 🪶
May 6, 2025 at 3:01 PM
Proposal for the use of morphometry as a sexing method for psittacine species Amazona amazonica, Amazona aestiva, Ara chloropterus, Anodorhynchus hyacinthinus, and Ara ararauna | journals.sagepub.com... | Avian Biology Research | #ornithology 🪶
Our latest out now in @natneuro.nature.com led by @trangcao.bsky.social looking at the reproducibility of MRI morphometry phenotypes in psychiatric disorders.
Paper:
www.nature.com/articles/s41...
Thread:
x.com/TrangCao2016...
Paper:
www.nature.com/articles/s41...
Thread:
x.com/TrangCao2016...
The cross-site reproducibility of MRI morphometric phenotypes in psychiatric disorders - Nature Neuroscience
A large analysis of MRI studies in five psychiatric disorders reveals that maps of brain volume differences in psychiatric illness are rarely reproducible, highlighting the need for alternative approa...
www.nature.com
July 31, 2026 at 1:42 AM
Our latest out now in @natneuro.nature.com led by @trangcao.bsky.social looking at the reproducibility of MRI morphometry phenotypes in psychiatric disorders.
Paper:
www.nature.com/articles/s41...
Thread:
x.com/TrangCao2016...
Paper:
www.nature.com/articles/s41...
Thread:
x.com/TrangCao2016...
A Multi-Scale Neuron Morphometry Dataset from Peta-voxel Mouse Whole-Brain Images | Scientific Data www.nature.com/articles/s41...
A Multi-Scale Neuron Morphometry Dataset from Peta-voxel Mouse Whole-Brain Images - Scientific Data
Scientific Data - A Multi-Scale Neuron Morphometry Dataset from Peta-voxel Mouse Whole-Brain Images
www.nature.com
May 6, 2025 at 10:21 PM
A Multi-Scale Neuron Morphometry Dataset from Peta-voxel Mouse Whole-Brain Images | Scientific Data www.nature.com/articles/s41...
Let's not mince words, this study shows what many of us suspected. Overworking messes with your brain, notably executive function and emotional regulation (sounds a lot like what we associate with burnout, doesn't it). 🧪
Link: oem.bmj.com/content/earl...
Link: oem.bmj.com/content/earl...
May 17, 2025 at 4:07 PM
Let's not mince words, this study shows what many of us suspected. Overworking messes with your brain, notably executive function and emotional regulation (sounds a lot like what we associate with burnout, doesn't it). 🧪
Link: oem.bmj.com/content/earl...
Link: oem.bmj.com/content/earl...
Beyond brain size: disentangling the effect of sex and brain size on brain morphometry and cognitive functioning | bioRxiv www.biorxiv.org/content/10.1...
June 5, 2025 at 4:17 AM
Beyond brain size: disentangling the effect of sex and brain size on brain morphometry and cognitive functioning | bioRxiv www.biorxiv.org/content/10.1...
SCIENTIFIC ILLUSTRATION • SHARKS
1. Illustraciència 2017 art contest finalist. Morphometry of Etmopterus spinax at different stages.
2. Methodology in a 2017 thesis.
-
#scientificillustration #shark #biology #zoology #wildlife #fish #illustration #art #science #drawing #sciart #naturalhistory
1. Illustraciència 2017 art contest finalist. Morphometry of Etmopterus spinax at different stages.
2. Methodology in a 2017 thesis.
-
#scientificillustration #shark #biology #zoology #wildlife #fish #illustration #art #science #drawing #sciart #naturalhistory
January 28, 2025 at 2:55 PM
SCIENTIFIC ILLUSTRATION • SHARKS
1. Illustraciència 2017 art contest finalist. Morphometry of Etmopterus spinax at different stages.
2. Methodology in a 2017 thesis.
-
#scientificillustration #shark #biology #zoology #wildlife #fish #illustration #art #science #drawing #sciart #naturalhistory
1. Illustraciència 2017 art contest finalist. Morphometry of Etmopterus spinax at different stages.
2. Methodology in a 2017 thesis.
-
#scientificillustration #shark #biology #zoology #wildlife #fish #illustration #art #science #drawing #sciart #naturalhistory