Tool Tuesday 🛠️ Spotlight: Nilearn. A Python library for fast, reproducible machine learning and statistical analysis on neuroimaging data. Great for connectivity and decoding. Find it on NITRC. #Nilearn #Python #MachineLearning
NITRC: Nilearn: Tool/Resource Info
www.nitrc.org
June 23, 2026 at 2:00 PM
Tool Tuesday 🛠️ Spotlight: Nilearn. A Python library for fast, reproducible machine learning and statistical analysis on neuroimaging data. Great for connectivity and decoding. Find it on NITRC. #Nilearn #Python #MachineLearning
Machine learning in neuroimaging is moving fast. From classification to generative models, NITRC is tracking tools that bring ML methods to brain data. What approaches are you following? 🤖 #MachineLearning #Neuroimaging #DeepLearning
May 28, 2026 at 2:01 PM
Machine learning in neuroimaging is moving fast. From classification to generative models, NITRC is tracking tools that bring ML methods to brain data. What approaches are you following? 🤖 #MachineLearning #Neuroimaging #DeepLearning
Machine learning keeps reshaping neuroimaging — classification, prediction, generative models. NITRC tracks tools that bring ML methods to brain data. What approaches are you exploring? 🤖 #MachineLearning #DeepLearning #Neuroimaging
June 25, 2026 at 3:01 PM
Machine learning keeps reshaping neuroimaging — classification, prediction, generative models. NITRC tracks tools that bring ML methods to brain data. What approaches are you exploring? 🤖 #MachineLearning #DeepLearning #Neuroimaging
Every tool on NITRC has a community behind it. 💬 Forums, documentation, and developer support turn software into something you can actually learn and trust. #OpenScience #Neuroimaging
September 24, 2026 at 3:01 PM
Every tool on NITRC has a community behind it. 💬 Forums, documentation, and developer support turn software into something you can actually learn and trust. #OpenScience #Neuroimaging
Resting-state fMRI is still one of the most active areas in the field. ICA, seed-based connectivity, graph theory — the methods keep growing. Find rs-fMRI tools on NITRC. 💡 #rsfMRI #RestingState #Neuroimaging
NITRC: Search
www.nitrc.org
September 17, 2026 at 1:00 PM
Resting-state fMRI is still one of the most active areas in the field. ICA, seed-based connectivity, graph theory — the methods keep growing. Find rs-fMRI tools on NITRC. 💡 #rsfMRI #RestingState #Neuroimaging
📣 Meet us in person at CNS 2025! The NITRC team is here to help you navigate the wealth of neuroimaging tools & data available on our platform. Let’s discuss how NITRC can support & amplify your research! 🧠💡
#Neuroimaging #ScienceCommunication #CNS2025
#Neuroimaging #ScienceCommunication #CNS2025
March 31, 2025 at 12:23 PM
📣 Meet us in person at CNS 2025! The NITRC team is here to help you navigate the wealth of neuroimaging tools & data available on our platform. Let’s discuss how NITRC can support & amplify your research! 🧠💡
#Neuroimaging #ScienceCommunication #CNS2025
#Neuroimaging #ScienceCommunication #CNS2025
🔬📢 Heading to #CNS2025? Stop by the NITRC booth to chat with us about your neuroimaging research! Learn how to share your work with the community & explore the vast resources already on NITRC. Let’s advance neuroscience together! 🧠✨
#Neuroimaging #OpenScience #BrainResearch
#Neuroimaging #OpenScience #BrainResearch
March 28, 2025 at 11:10 AM
🔬📢 Heading to #CNS2025? Stop by the NITRC booth to chat with us about your neuroimaging research! Learn how to share your work with the community & explore the vast resources already on NITRC. Let’s advance neuroscience together! 🧠✨
#Neuroimaging #OpenScience #BrainResearch
#Neuroimaging #OpenScience #BrainResearch
Check out our colleague Marta Bianciardi's atlas here: www.nitrc.org/projects/bra...
But for PAG it might be better to use subject-specific maps based around the aqueduct. We created a procedure for this in these papers:
www.jneurosci.org/content/44/2...
www.affective-science.org/pubs/2019/Kr...
But for PAG it might be better to use subject-specific maps based around the aqueduct. We created a procedure for this in these papers:
www.jneurosci.org/content/44/2...
www.affective-science.org/pubs/2019/Kr...
NITRC: Brainstem Navigator: Tool/Resource Info
www.nitrc.org
May 19, 2025 at 12:12 PM
Check out our colleague Marta Bianciardi's atlas here: www.nitrc.org/projects/bra...
But for PAG it might be better to use subject-specific maps based around the aqueduct. We created a procedure for this in these papers:
www.jneurosci.org/content/44/2...
www.affective-science.org/pubs/2019/Kr...
But for PAG it might be better to use subject-specific maps based around the aqueduct. We created a procedure for this in these papers:
www.jneurosci.org/content/44/2...
www.affective-science.org/pubs/2019/Kr...
Sharing your tool with the community? NITRC gives neuroimaging software a home — with hosting, documentation, forums, and a built-in audience of researchers. 🛠️ #OpenSource #Neuroimaging #NITRC
NITRC: Welcome
CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).
CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, ICA, masked ICA, fc-MVPA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package
CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.
Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, fc-MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
https://www.conn-toolbox.org
www.nitrc.org
June 12, 2026 at 1:00 PM
Sharing your tool with the community? NITRC gives neuroimaging software a home — with hosting, documentation, forums, and a built-in audience of researchers. 🛠️ #OpenSource #Neuroimaging #NITRC
The field is expanding beyond MR. 🧲 NITRC now spans PET, SPECT, CT, MEG/EEG, and optical imaging — plus digital atlasing and computational neuroscience. Explore what's new. #Neuroimaging #OpenScience
August 21, 2026 at 3:01 PM
The field is expanding beyond MR. 🧲 NITRC now spans PET, SPECT, CT, MEG/EEG, and optical imaging — plus digital atlasing and computational neuroscience. Explore what's new. #Neuroimaging #OpenScience
Open data = open science. NITRC-IR gives researchers access to shared neuroimaging datasets — MRI, fMRI, DTI, and more — to accelerate discovery without starting from scratch. 🗂️ #OpenData #OpenScience #Neuroimaging
May 8, 2026 at 1:00 PM
Open data = open science. NITRC-IR gives researchers access to shared neuroimaging datasets — MRI, fMRI, DTI, and more — to accelerate discovery without starting from scratch. 🗂️ #OpenData #OpenScience #Neuroimaging
Python is everywhere in neuroimaging analysis now. From data wrangling to machine learning, the ecosystem keeps growing. Which libraries are part of your daily workflow? 🐍 #Python #Neuroimaging #DataScience
NITRC: Search
www.nitrc.org
June 11, 2026 at 3:00 PM
Python is everywhere in neuroimaging analysis now. From data wrangling to machine learning, the ecosystem keeps growing. Which libraries are part of your daily workflow? 🐍 #Python #Neuroimaging #DataScience
🌍 Use NITRC Image Repository (NITRC-IR) to access & share massive neuroimaging datasets. Data you can actually use: https://www.nitrc.org/ir/ #DataScience #NeuroData
June 5, 2025 at 2:00 PM
🌍 Use NITRC Image Repository (NITRC-IR) to access & share massive neuroimaging datasets. Data you can actually use: https://www.nitrc.org/ir/ #DataScience #NeuroData
Tool Tuesday 🛠️ Spotlight: Lead-DBS. A toolbox for reconstructing deep brain stimulation electrodes and mapping their connectivity — widely used in Parkinson's research. Find it on NITRC. #LeadDBS #DBS #Neuroimaging nitrc.org/projects/lead-dbs
September 22, 2026 at 2:00 PM
Tool Tuesday 🛠️ Spotlight: Lead-DBS. A toolbox for reconstructing deep brain stimulation electrodes and mapping their connectivity — widely used in Parkinson's research. Find it on NITRC. #LeadDBS #DBS #Neuroimaging nitrc.org/projects/lead-dbs
🧪 Try SPM (Statistical Parametric Mapping) on NITRC – essential for fMRI, PET & EEG data analysis. 📥 Get it here: https://www.nitrc.org/projects/spm #fMRI #NeuroTools #OpenScience
NITRC: SPM: Tool/Resource Info
www.nitrc.org
July 17, 2025 at 1:15 PM
🧪 Try SPM (Statistical Parametric Mapping) on NITRC – essential for fMRI, PET & EEG data analysis. 📥 Get it here: https://www.nitrc.org/projects/spm #fMRI #NeuroTools #OpenScience
If you’re interested in the fMRI detectable brain networks involved in tasks I would like to refer you to fMRI-CPCA 😁 www.nitrc.org/projects/fmr...
NITRC: fMRI-CPCA: Tool/Resource Info
www.nitrc.org
February 13, 2024 at 7:04 PM
If you’re interested in the fMRI detectable brain networks involved in tasks I would like to refer you to fMRI-CPCA 😁 www.nitrc.org/projects/fmr...
Great connecting at #CNS2025! 🔬 If you stopped by the NITRC booth (or missed us!), you can still access powerful neuroimaging tools, data, & collaboration opportunities anytime. Let’s keep the conversation going: nitrc.org 🏆🧠 #BrainResearch #DataSharing
April 2, 2025 at 12:00 PM
Great connecting at #CNS2025! 🔬 If you stopped by the NITRC booth (or missed us!), you can still access powerful neuroimaging tools, data, & collaboration opportunities anytime. Let’s keep the conversation going: nitrc.org 🏆🧠 #BrainResearch #DataSharing
Unlock Thousands of Datasets with NITRC-IR.
NITRC-IR is a neuroimaging-focused image repository for sharing MRI/fMRI/DTI datasets + derivatives, with project landing pages and options for public or controlled access—often used to support reproducible publications.
nitrc.org/ir
NITRC-IR is a neuroimaging-focused image repository for sharing MRI/fMRI/DTI datasets + derivatives, with project landing pages and options for public or controlled access—often used to support reproducible publications.
nitrc.org/ir
April 9, 2026 at 11:21 AM
Unlock Thousands of Datasets with NITRC-IR.
NITRC-IR is a neuroimaging-focused image repository for sharing MRI/fMRI/DTI datasets + derivatives, with project landing pages and options for public or controlled access—often used to support reproducible publications.
nitrc.org/ir
NITRC-IR is a neuroimaging-focused image repository for sharing MRI/fMRI/DTI datasets + derivatives, with project landing pages and options for public or controlled access—often used to support reproducible publications.
nitrc.org/ir
Tool Tuesday 🛠️ Spotlight: DIPY. A free, open-source Python library for diffusion MRI — denoising, registration, tractography, and more. Find it on NITRC. #DIPY #DiffusionMRI #Python
NITRC: DIPY Diffusion Imaging Analysis: Tool/Resource Info
The relation of structural integrity and task-related functional connectivity in the aging brain. posted by NITRC Moderator on Sep 21, 2019
nitrc.org
July 21, 2026 at 2:00 PM
Tool Tuesday 🛠️ Spotlight: DIPY. A free, open-source Python library for diffusion MRI — denoising, registration, tractography, and more. Find it on NITRC. #DIPY #DiffusionMRI #Python
🚀 Got neuroimaging tools, datasets, or workflows to share? Visit the NITRC booth at CNS to learn how to make your research more discoverable & impactful! Already using NITRC? We’ll help you get the most out of it! 🔎🧠
#CNS2025 #Neuroscience #DataSharing
#CNS2025 #Neuroscience #DataSharing
March 29, 2025 at 12:04 PM
🚀 Got neuroimaging tools, datasets, or workflows to share? Visit the NITRC booth at CNS to learn how to make your research more discoverable & impactful! Already using NITRC? We’ll help you get the most out of it! 🔎🧠
#CNS2025 #Neuroscience #DataSharing
#CNS2025 #Neuroscience #DataSharing
We've released mri_reface 0.3.3 with minor enhancements and bugfixes. This fixes behavior when input .nii files have inconsistent sform vs qform geometry, automatically splits dynamic PET images to allow registration across frames, and applies some minor bugfixes to nii2dicom.
NITRC: mri_reface: Tool/Resource Info
www.nitrc.org
November 20, 2023 at 8:52 PM
We've released mri_reface 0.3.3 with minor enhancements and bugfixes. This fixes behavior when input .nii files have inconsistent sform vs qform geometry, automatically splits dynamic PET images to allow registration across frames, and applies some minor bugfixes to nii2dicom.
Developing standardized protocols for neuroimaging studies? Collaborate with peers on NITRC to establish best practices. https://www.nitrc.org/projects/best_practices #NeuroimagingStandards #OpenScience #Neuroimaging
March 24, 2025 at 1:00 PM
Developing standardized protocols for neuroimaging studies? Collaborate with peers on NITRC to establish best practices. https://www.nitrc.org/projects/best_practices #NeuroimagingStandards #OpenScience #Neuroimaging
That's a wrap on July 🧠 Thanks to everyone finding, sharing, and building open neuroimaging tools this month. See you in August. #OpenScience #Neuroimaging #NITRC
July 31, 2026 at 6:00 PM
That's a wrap on July 🧠 Thanks to everyone finding, sharing, and building open neuroimaging tools this month. See you in August. #OpenScience #Neuroimaging #NITRC
Looking for structured, searchable brain data? 🧠 NITRC-IR supports powerful metadata tagging + image modality filters. 📊 Start your next study here: https://www.nitrc.org/ir #Neuroimaging #DataScience
July 3, 2025 at 2:00 PM
Looking for structured, searchable brain data? 🧠 NITRC-IR supports powerful metadata tagging + image modality filters. 📊 Start your next study here: https://www.nitrc.org/ir #Neuroimaging #DataScience
Enhance your neuroimaging workflow with FSL! This comprehensive library of analysis tools is pre-installed on NITRC-CE. Discover more > nitrc.org/projects/fsl #NeuroimagingTools #DataAnalysis
February 27, 2025 at 2:01 PM
Enhance your neuroimaging workflow with FSL! This comprehensive library of analysis tools is pre-installed on NITRC-CE. Discover more > nitrc.org/projects/fsl #NeuroimagingTools #DataAnalysis