Reagon-omics
October 28, 2025 at 5:17 AM
Reagon-omics
Higher inflammation burden by blood biomarkers and reduced lifespan, consistent findings in 3 cohorts
www.cell.com/ajhg/fulltex...
www.cell.com/ajhg/fulltex...
Cross-omics risk scores of inflammation markers are associated with all-cause mortality: The Canadian Longitudinal Study on Aging
We developed single- and multi-omics risk scores to assess blood inflammation markers
and validated them across three cohorts. Our multi-omics models outperformed blood
markers in predicting all-cause...
www.cell.com
July 8, 2025 at 2:47 PM
Higher inflammation burden by blood biomarkers and reduced lifespan, consistent findings in 3 cohorts
www.cell.com/ajhg/fulltex...
www.cell.com/ajhg/fulltex...
What are "omics"?
A good schematic
cell.com/neuron/fullt...
could add epigenomics, immunomics, microbiomics, glycomics, exposomics, etc
A good schematic
cell.com/neuron/fullt...
could add epigenomics, immunomics, microbiomics, glycomics, exposomics, etc
July 18, 2025 at 9:18 PM
What are "omics"?
A good schematic
cell.com/neuron/fullt...
could add epigenomics, immunomics, microbiomics, glycomics, exposomics, etc
A good schematic
cell.com/neuron/fullt...
could add epigenomics, immunomics, microbiomics, glycomics, exposomics, etc
Our vision for Precision Omics Initiative Sweden (PROMISE) is now published in Nature Medicine! By boosting data-driven precision omics in Sweden, we can not only empower research but also integrate it with healthcare in a new way, with an impact in 🇸🇪 and 🌎. 🧵: rdcu.be/egmXY
Precision Omics Initiative Sweden (PROMISE) will integrate research with healthcare
Nature Medicine - Precision Omics Initiative Sweden (PROMISE) will integrate research with healthcare
rdcu.be
April 7, 2025 at 11:48 AM
Our vision for Precision Omics Initiative Sweden (PROMISE) is now published in Nature Medicine! By boosting data-driven precision omics in Sweden, we can not only empower research but also integrate it with healthcare in a new way, with an impact in 🇸🇪 and 🌎. 🧵: rdcu.be/egmXY
How gut microbiome research needs to move forward. Going multi-omics, getting to causality, rigorous clinical studies
www.cell.com/cell/fulltex...
@cellpress.bsky.social
www.cell.com/cell/fulltex...
@cellpress.bsky.social
March 6, 2025 at 6:04 PM
How gut microbiome research needs to move forward. Going multi-omics, getting to causality, rigorous clinical studies
www.cell.com/cell/fulltex...
@cellpress.bsky.social
www.cell.com/cell/fulltex...
@cellpress.bsky.social
Update I'm back in France 🇫🇷! Joining Inserm to build a multi-omics team on retinal development, at the nexus of live imaging, omics & human embryology.
Huge thanks to CZ Biohub SF folks, esp. my mentor, friend & science soulmate @loicaroyer.bsky.social for the amazing time. More cool science soon🧪
Huge thanks to CZ Biohub SF folks, esp. my mentor, friend & science soulmate @loicaroyer.bsky.social for the amazing time. More cool science soon🧪
October 1, 2025 at 12:13 PM
Update I'm back in France 🇫🇷! Joining Inserm to build a multi-omics team on retinal development, at the nexus of live imaging, omics & human embryology.
Huge thanks to CZ Biohub SF folks, esp. my mentor, friend & science soulmate @loicaroyer.bsky.social for the amazing time. More cool science soon🧪
Huge thanks to CZ Biohub SF folks, esp. my mentor, friend & science soulmate @loicaroyer.bsky.social for the amazing time. More cool science soon🧪
Excited to share my new Tansley Review @newphyt.bsky.social on emerging single-cell and spatial omics technologies, many of which are just beginning to be applied in plant biology! Big opportunities lie ahead for the field. [1/n]
nph.onlinelibrary.wiley.com/doi/10.1111/...
nph.onlinelibrary.wiley.com/doi/10.1111/...
Exploring the untapped potential of single‐cell and spatial omics in plant biology
Advances in single-cell and spatial omics technologies have revolutionised biology by revealing the diverse molecular states of individual cells and their spatial organization within tissues. The fie...
nph.onlinelibrary.wiley.com
May 22, 2025 at 6:46 AM
Excited to share my new Tansley Review @newphyt.bsky.social on emerging single-cell and spatial omics technologies, many of which are just beginning to be applied in plant biology! Big opportunities lie ahead for the field. [1/n]
nph.onlinelibrary.wiley.com/doi/10.1111/...
nph.onlinelibrary.wiley.com/doi/10.1111/...
Where do the dopamine hits does from? A new reward center in the brain is discovered (yes, single cell, spatial omics at work again)
@science.org
www.science.org/doi/10.1126/...
www.science.org/doi/10.1126/...
@science.org
www.science.org/doi/10.1126/...
www.science.org/doi/10.1126/...
January 23, 2025 at 8:41 PM
Where do the dopamine hits does from? A new reward center in the brain is discovered (yes, single cell, spatial omics at work again)
@science.org
www.science.org/doi/10.1126/...
www.science.org/doi/10.1126/...
@science.org
www.science.org/doi/10.1126/...
www.science.org/doi/10.1126/...
Ok, I tried to create my own list of people working on developing statistical or machine learning models applied to omics data. I am sure I missed a lot of cool people. If you'd like to be added, let me know. #Stats #ML #Omics
go.bsky.app/73rcuJn
go.bsky.app/73rcuJn
November 24, 2024 at 7:50 AM
Ok, I tried to create my own list of people working on developing statistical or machine learning models applied to omics data. I am sure I missed a lot of cool people. If you'd like to be added, let me know. #Stats #ML #Omics
go.bsky.app/73rcuJn
go.bsky.app/73rcuJn
"Philosophy of Biology: The power of theory in the life sciences"
elifesciences.org/articles/112...
@zdblount.bsky.social shared this thought-provoking paper with the lab group.
elifesciences.org/articles/112...
@zdblount.bsky.social shared this thought-provoking paper with the lab group.
Philosophy of Biology: The power of theory in the life sciences
Theory can help address cell and molecular biology’s major challenges, particularly those arising from large omics datasets.
elifesciences.org
September 22, 2026 at 5:29 PM
"Philosophy of Biology: The power of theory in the life sciences"
elifesciences.org/articles/112...
@zdblount.bsky.social shared this thought-provoking paper with the lab group.
elifesciences.org/articles/112...
@zdblount.bsky.social shared this thought-provoking paper with the lab group.
Scikit-bio: Python for Omics blog.stephenturner.us/p/scikit-bio...
Scikit-bio: Python for Omics
The "missing middle" for omics data analysis in Python
blog.stephenturner.us
December 16, 2025 at 10:50 AM
Scikit-bio: Python for Omics blog.stephenturner.us/p/scikit-bio...
www.nature.com/articles/s41...
AI-driven multi-omics modeling of myalgic encephalomyelitis/chronic fatigue syndrome
www.biorxiv.org/content/10.1...
BioMapAI: Multi-Omics-Modellierung der Myalgischen Enzephalomyelitis / des Chronischen Erschöpfungssyndroms mittels künstlicher Intelligenz
AI-driven multi-omics modeling of myalgic encephalomyelitis/chronic fatigue syndrome
www.biorxiv.org/content/10.1...
BioMapAI: Multi-Omics-Modellierung der Myalgischen Enzephalomyelitis / des Chronischen Erschöpfungssyndroms mittels künstlicher Intelligenz
AI-driven multi-omics modeling of myalgic encephalomyelitis/chronic fatigue syndrome - Nature Medicine
Analysis of a deeply phenotyped, longitudinal cohort of 249 participants elucidates the network of concurrent molecular and macroscopic patterns related to insurgence and course of ME/CFS.
www.nature.com
July 28, 2025 at 10:19 PM
www.nature.com/articles/s41...
AI-driven multi-omics modeling of myalgic encephalomyelitis/chronic fatigue syndrome
www.biorxiv.org/content/10.1...
BioMapAI: Multi-Omics-Modellierung der Myalgischen Enzephalomyelitis / des Chronischen Erschöpfungssyndroms mittels künstlicher Intelligenz
AI-driven multi-omics modeling of myalgic encephalomyelitis/chronic fatigue syndrome
www.biorxiv.org/content/10.1...
BioMapAI: Multi-Omics-Modellierung der Myalgischen Enzephalomyelitis / des Chronischen Erschöpfungssyndroms mittels künstlicher Intelligenz
Here it is! Bonsai. Now there is really no more excuse for using t-SNE/UMAP. Bonsai not only makes cool pictures of your data. It actually rigorously preserves its structure. No tunable parameters. Incredible work by @dhdegroot.bsky.social.
I'm so excited about this!
www.biorxiv.org/content/10.1...
I'm so excited about this!
www.biorxiv.org/content/10.1...
Bonsai: Tree representations for distortion-free visualization and exploratory analysis of single-cell omics data
Single-cell omics methods promise to revolutionize our understanding of gene regulatory processes during cell differentiation, but analysis of such data continues to pose a major challenge. Apart from...
www.biorxiv.org
May 9, 2025 at 10:49 AM
Here it is! Bonsai. Now there is really no more excuse for using t-SNE/UMAP. Bonsai not only makes cool pictures of your data. It actually rigorously preserves its structure. No tunable parameters. Incredible work by @dhdegroot.bsky.social.
I'm so excited about this!
www.biorxiv.org/content/10.1...
I'm so excited about this!
www.biorxiv.org/content/10.1...
Spatial omics of human arteries to understand what drives atherosclerosis: highlights role of the microvasculature (vasa vasorum), adventitial inflammation, migration of vascular smooth muscle cells (and more)
nature.com/articles/s44...
nature.com/articles/s44...
December 23, 2024 at 4:20 PM
Spatial omics of human arteries to understand what drives atherosclerosis: highlights role of the microvasculature (vasa vasorum), adventitial inflammation, migration of vascular smooth muscle cells (and more)
nature.com/articles/s44...
nature.com/articles/s44...
Ocean-M: an integrated global-scale multi-omics database for marine microbial diversity, function and ecological interactions academic.oup.com/nar/advance-... #jcampubs 🌊
Ocean-M: an integrated global-scale multi-omics database for marine microbial diversity, function and ecological interactions
Abstract. Multi-omics analyses have significantly advanced the understanding of complex marine microbial communities and their interactions. Despite notabl
academic.oup.com
November 1, 2025 at 7:35 AM
Ocean-M: an integrated global-scale multi-omics database for marine microbial diversity, function and ecological interactions academic.oup.com/nar/advance-... #jcampubs 🌊
The Future of NGS and Multi-Omics: An Integrated Sequencing Platform open.substack.com/pub/albertvi...
The Future of NGS and Multi-Omics: An Integrated Sequencing Platform
Introduction
open.substack.com
April 22, 2025 at 6:53 AM
The Future of NGS and Multi-Omics: An Integrated Sequencing Platform open.substack.com/pub/albertvi...
Exciting news! Our @erc.europa.eu StG project ARCHAEAOLOGY got funded 🎉
We’ll combine cryoET/EM, ExM & spatial omics to explore the subcellular organization of Asgard archaea.
Job ads coming soon! 🦠 ❄️ 🔬
#TeamTomo #ArchaeaSky #MicroSky
We’ll combine cryoET/EM, ExM & spatial omics to explore the subcellular organization of Asgard archaea.
Job ads coming soon! 🦠 ❄️ 🔬
#TeamTomo #ArchaeaSky #MicroSky
Congratulations to @florianwollweber.bsky.social, the recently appointed Group Leader at EMBL Grenoble, who received an ERC Starting Grant worth approximately €2 million to investigate the origins of eukaryotic cell complexity.
bit.ly/4gNwEBk
bit.ly/4gNwEBk
September 5, 2026 at 12:57 PM
Exciting news! Our @erc.europa.eu StG project ARCHAEAOLOGY got funded 🎉
We’ll combine cryoET/EM, ExM & spatial omics to explore the subcellular organization of Asgard archaea.
Job ads coming soon! 🦠 ❄️ 🔬
#TeamTomo #ArchaeaSky #MicroSky
We’ll combine cryoET/EM, ExM & spatial omics to explore the subcellular organization of Asgard archaea.
Job ads coming soon! 🦠 ❄️ 🔬
#TeamTomo #ArchaeaSky #MicroSky
The JPR issue on Single-Cell Omics is out.
As the editorial highlights, understanding biological systems requires direct measurements at all molecular levels.
Unlocking the Potential of Single-Cell Omics
pubs.acs.org/doi/10.1021/...
As the editorial highlights, understanding biological systems requires direct measurements at all molecular levels.
Unlocking the Potential of Single-Cell Omics
pubs.acs.org/doi/10.1021/...
April 5, 2025 at 12:45 PM
The JPR issue on Single-Cell Omics is out.
As the editorial highlights, understanding biological systems requires direct measurements at all molecular levels.
Unlocking the Potential of Single-Cell Omics
pubs.acs.org/doi/10.1021/...
As the editorial highlights, understanding biological systems requires direct measurements at all molecular levels.
Unlocking the Potential of Single-Cell Omics
pubs.acs.org/doi/10.1021/...
“Reagan-omics” was a joke. Just the rich getting richer. 🧐. We really need to start taxing billionaires and debunk the myth of trickle down economics.
January 29, 2026 at 7:18 PM
“Reagan-omics” was a joke. Just the rich getting richer. 🧐. We really need to start taxing billionaires and debunk the myth of trickle down economics.
Postdoc - Statistics and machine learning with spatial omics and single-cell perturbation data
www.huber.embl.de/group/posts/...
www.huber.embl.de/group/posts/...
Postdoc - Statistics and machine learning with spatial omics and single-cell perturbation data – Huber Group @ EMBL
Precision Oncology and Multiomics
www.huber.embl.de
March 12, 2025 at 1:08 PM
Postdoc - Statistics and machine learning with spatial omics and single-cell perturbation data
www.huber.embl.de/group/posts/...
www.huber.embl.de/group/posts/...
🌱🧬 "Advances in seed omics" now published in its complete form @jxbotany.bsky.social
doi.org/10.1093/jxb/...
Covers how omics tech are revolutionising seed research - single-cell and multi-omics integration towards climate-resilient crops.
La Trobe (@lewseylab.bsky.social) and Zhejiang Uni.
doi.org/10.1093/jxb/...
Covers how omics tech are revolutionising seed research - single-cell and multi-omics integration towards climate-resilient crops.
La Trobe (@lewseylab.bsky.social) and Zhejiang Uni.
September 25, 2025 at 3:02 AM
🌱🧬 "Advances in seed omics" now published in its complete form @jxbotany.bsky.social
doi.org/10.1093/jxb/...
Covers how omics tech are revolutionising seed research - single-cell and multi-omics integration towards climate-resilient crops.
La Trobe (@lewseylab.bsky.social) and Zhejiang Uni.
doi.org/10.1093/jxb/...
Covers how omics tech are revolutionising seed research - single-cell and multi-omics integration towards climate-resilient crops.
La Trobe (@lewseylab.bsky.social) and Zhejiang Uni.