Non-comprehensive list of projects, hardware, software, and people related to #OpenMicroscopy. List could do with some updates, so please share and suggest additions! github.com/HohlbeinLab/...
GitHub - HohlbeinLab/OpenMicroscopy: Non-comprehensive list of projects and resources related to open microscopy.
Non-comprehensive list of projects and resources related to open microscopy. - HohlbeinLab/OpenMicroscopy
github.com
December 10, 2024 at 8:48 AM
Non-comprehensive list of projects, hardware, software, and people related to #OpenMicroscopy. List could do with some updates, so please share and suggest additions! github.com/HohlbeinLab/...
Going to present a few minutes on #OpenMicroscopy tomorrow online and in colour. @makertobey.bsky.social #LibreHub
June 11, 2025 at 10:23 AM
Going to present a few minutes on #OpenMicroscopy tomorrow online and in colour. @makertobey.bsky.social #LibreHub
In the spirit of which, here some new filter wheels designed by Ian Kercher with more info available here: www.printables.com/model/110377... #OpenMicroscopy
December 10, 2024 at 11:22 AM
In the spirit of which, here some new filter wheels designed by Ian Kercher with more info available here: www.printables.com/model/110377... #OpenMicroscopy
Quick career update. Since beginning of March, I am appointed as Professor of Biosensorics at the Brandenburg University of Technology (BTU, Germany). Expect more single-molecule and single-cell inspired stuff & #OpenMicroscopy soonTM (🧬,🧫,🔬,🧪).
March 22, 2026 at 11:23 AM
Quick career update. Since beginning of March, I am appointed as Professor of Biosensorics at the Brandenburg University of Technology (BTU, Germany). Expect more single-molecule and single-cell inspired stuff & #OpenMicroscopy soonTM (🧬,🧫,🔬,🧪).
Captain Picard making the case for #OpenMicroscopy
Picard management tip: Your knowledge is a wellspring from which to draw for others, not a treasure to hoard for yourself.
June 21, 2025 at 4:15 PM
Captain Picard making the case for #OpenMicroscopy
A few new #OpenMicroscopy entries: descSPIM (lightsheet), TWINKLE (multiphoton), Entomoscope (photomicroscope), ESPressoscope, pDPC (phase contrast), cryoscope (EM+superres), navigate (lightsheet software): github.com/HohlbeinLab/...
GitHub - HohlbeinLab/OpenMicroscopy: Non-comprehensive list of projects and resources related to open microscopy.
Non-comprehensive list of projects and resources related to open microscopy. - HohlbeinLab/OpenMicroscopy
github.com
March 27, 2025 at 8:54 AM
A few new #OpenMicroscopy entries: descSPIM (lightsheet), TWINKLE (multiphoton), Entomoscope (photomicroscope), ESPressoscope, pDPC (phase contrast), cryoscope (EM+superres), navigate (lightsheet software): github.com/HohlbeinLab/...
April 28, 2026 at 4:52 AM
You might have heard about our GitHub repository on #OpenMicroscopy. I finally vibecoded a page that (a) allows to search all entries and (b) generates a new database as soon as items are added on GitHub:
hohlbeinlab.github.io/OpenMicrosco...
Check it out and comments welcome!
hohlbeinlab.github.io/OpenMicrosco...
Check it out and comments welcome!
Open Microscopy — Resource Index
hohlbeinlab.github.io
June 19, 2026 at 7:09 PM
You might have heard about our GitHub repository on #OpenMicroscopy. I finally vibecoded a page that (a) allows to search all entries and (b) generates a new database as soon as items are added on GitHub:
hohlbeinlab.github.io/OpenMicrosco...
Check it out and comments welcome!
hohlbeinlab.github.io/OpenMicrosco...
Check it out and comments welcome!
Please see below for some new #OpenMicroscopy software from the group, and specifically @drnjitram.bsky.social, to quantify structural features in images using rotational Fourier transforms. Pre-print hopefully later this week. Software already on Github. :) 🧪, 🔬
RFT: Analysing angular and structural information in whatever image you throw at it! We have created an ImageJ/Python plugin that can easily extract anisotropy data from images! Give it an image and it'll tell you how anisotropic the structure is!
@hohlbeinlab.bsky.social
github.com/HohlbeinLab/...
@hohlbeinlab.bsky.social
github.com/HohlbeinLab/...
January 27, 2025 at 3:00 PM
Please see below for some new #OpenMicroscopy software from the group, and specifically @drnjitram.bsky.social, to quantify structural features in images using rotational Fourier transforms. Pre-print hopefully later this week. Software already on Github. :) 🧪, 🔬
Last week, the Latin American Hub for Bioimaging Through Open Hardware kindly invited me to speak about our 3D printing work to researchers across Latin America. Great to see so much engagement & positivity about the work. Really great to hear about other research in the #OpenMicroscopy space. 🔬
May 30, 2025 at 7:47 AM
Last week, the Latin American Hub for Bioimaging Through Open Hardware kindly invited me to speak about our 3D printing work to researchers across Latin America. Great to see so much engagement & positivity about the work. Really great to hear about other research in the #OpenMicroscopy space. 🔬
Some archeology in the @openmicroscopy mailing list... https://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-September/004785.html
January 2, 2025 at 3:09 PM
Some archeology in the @openmicroscopy mailing list... https://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-September/004785.html
Dear all
Today we are releasing Bio-Formats 8.1.1 which includes several fixes and improvements.
The full list of changes included in this release are on [the openmicroscopy website](www.openmicroscopy.org/2025/03/05/b...). Please use image.sc in case of questions or problems.
Today we are releasing Bio-Formats 8.1.1 which includes several fixes and improvements.
The full list of changes included in this release are on [the openmicroscopy website](www.openmicroscopy.org/2025/03/05/b...). Please use image.sc in case of questions or problems.
The Open Microscopy Environment
A consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.
www.openmicroscopy.org
March 5, 2025 at 4:18 PM
Dear all
Today we are releasing Bio-Formats 8.1.1 which includes several fixes and improvements.
The full list of changes included in this release are on [the openmicroscopy website](www.openmicroscopy.org/2025/03/05/b...). Please use image.sc in case of questions or problems.
Today we are releasing Bio-Formats 8.1.1 which includes several fixes and improvements.
The full list of changes included in this release are on [the openmicroscopy website](www.openmicroscopy.org/2025/03/05/b...). Please use image.sc in case of questions or problems.
If you have teaching materials for bioimage analysis that can be shared, please reply or PM me. Let's then think about integrating them into to the collection. https://x.com/openmicroscopy/status/963002586747023360
January 28, 2025 at 6:57 PM
If you have teaching materials for bioimage analysis that can be shared, please reply or PM me. Let's then think about integrating them into to the collection. https://x.com/openmicroscopy/status/963002586747023360
R bioconductor meeting: OME bio formats now wrapped and usable in R (!!!) called Rbioformats @openmicroscopy
January 28, 2025 at 6:32 PM
R bioconductor meeting: OME bio formats now wrapped and usable in R (!!!) called Rbioformats @openmicroscopy
yes, Petr from OME! sorry^2 RT @openmicroscopy: @cmci_ + OME!!! ;-)!
January 28, 2025 at 6:24 PM
yes, Petr from OME! sorry^2 RT @openmicroscopy: @cmci_ + OME!!! ;-)!
@openmicroscopy You've been quoted in my #Storify story "EuBIAS meeting, Oct 8, 2013" http://sfy.co/rFr2
January 28, 2025 at 6:23 PM
@openmicroscopy You've been quoted in my #Storify story "EuBIAS meeting, Oct 8, 2013" http://sfy.co/rFr2
Looks like large Nikon STORM acquisition files will be OK in ImageJ soon, thanks to the Bio-Formats devs: https://github.com/openmicroscopy/bioformats/pull/1351
ND2: reset series count before allocating offset array by melissalinkert · Pull Request #1351 · ome/bioformats
This prevents extra memory from being used if the series count was too
high. See http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-September/004699.html and the file in nd2/christophe/.
github.com
December 26, 2024 at 5:26 PM
Looks like large Nikon STORM acquisition files will be OK in ImageJ soon, thanks to the Bio-Formats devs: https://github.com/openmicroscopy/bioformats/pull/1351
I really want this in #ImageJ / #Fiji RT @openmicroscopy: New image index & search, Huygens Titan from @svi_huygens http://www.svi.nl/HuygensTitan
December 26, 2024 at 5:09 PM
I really want this in #ImageJ / #Fiji RT @openmicroscopy: New image index & search, Huygens Titan from @svi_huygens http://www.svi.nl/HuygensTitan