#OptimalTransport-based
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haoyin.bsky.social
Multiomics single-cell optimal transport
moscot.spatiotemporal

#OptimalTransport-based common coordinate framework

Map & align #SpatialTranscriptomics with single-cell data

scalable for millions of cells across multiple time points

vs Tangram gimVI

#Nature 2025
www.nature.com/articles/s41...
April 4, 2025 at 11:12 AM
haoyin.bsky.social
PASTE2

Partial alignment (based on a subset of spots) of multi-slice #SpatialTranscriptomics

3D reconstruction of 16-slide Stereo-seq Drosophila embryo

Partial fused Gromov-Wasserstein #OptimalTransport

vs PASTE Pamona Tangram

#GenomeRes 2023
genome.cshlp.org/content/33/7...
March 22, 2025 at 11:11 AM
prasathlab.com
scEGOT: single-cell trajectory inference framework based on entropic Gaussian mixture optimal transport

doi.org/10.1186/s128...

#TI #singlecell #biology #optimaltransport
scEGOT: single-cell trajectory inference framework based on entropic Gaussian mixture optimal transport - BMC Bioinformatics
Background Time-series scRNA-seq data have opened a door to elucidate cell differentiation, and in this context, the optimal transport theory has been attracting much attention. However, there remain ...
doi.org
December 25, 2024 at 6:02 PM
biorxiv-biophys.bsky.social
Imaging Data-based Model Description Combining OptimalTransport and Phase-field Model https://www.biorxiv.org/content/10.64898/2025.11.30.691255v1
December 2, 2025 at 7:48 PM
biorxivpreprint.bsky.social
Imaging Data-based Model Description Combining OptimalTransport and Phase-field Model https://www.biorxiv.org/content/10.64898/2025.11.30.691255v1
December 2, 2025 at 7:48 PM