👋🏽 Meet HERRO- a deep learning framework designed to correct ONT Simplex reads while preserving genomic differences.
Paired with Verkko, it’s capable of reconstructing T2T genomes, including X & Y.
Discover the science behind it: www.biorxiv.org/content/10.1...
Paired with Verkko, it’s capable of reconstructing T2T genomes, including X & Y.
Discover the science behind it: www.biorxiv.org/content/10.1...
Telomere-to-Telomere Phased Genome Assembly Using HERRO-Corrected Simplex Nanopore Reads
Telomere-to-telomere phased assemblies have become the norm in genomics. To achieve these for diploid and even polyploid genomes, the contemporary approach involves a combination of two long-read sequ...
www.biorxiv.org
January 16, 2025 at 10:47 PM
I'm looking forward being #PAG2025 and meeting with PacBio user 😃
A bright new day for plant and animal #genomics is here! Join #PacBio at PAG 2025 in San Diego to explore the power of #HiFisequencing. Visit our booth, attend our workshop, or schedule a one-on-one meeting.
Details here: bit.ly/41hR9Qw
#PAG32
Details here: bit.ly/41hR9Qw
#PAG32
December 11, 2024 at 5:56 PM
I'm looking forward being #PAG2025 and meeting with PacBio user 😃
Great presentation from @johannconfais.bsky.social at #PAG2025 #PAG32 on the first result obtained with panREPET tool a non reference centric approach
January 14, 2025 at 7:41 PM
Great presentation from @johannconfais.bsky.social at #PAG2025 #PAG32 on the first result obtained with panREPET tool a non reference centric approach
@johannconfais.bsky.social and @clementgoubert.bsky.social are presenting @tehub.bsky.social at #PAG2025, an amazing resource and driven community for anyone interested in transposable element
January 12, 2025 at 11:28 PM
@johannconfais.bsky.social and @clementgoubert.bsky.social are presenting @tehub.bsky.social at #PAG2025, an amazing resource and driven community for anyone interested in transposable element
Excited to present at the #PAG2025 @nanoporetech.com workshop tomorrow! Come along to hear more about how we incorporate ONT methylation sequencing for sea turtle conservation! 🐢🧬
Who’s all going to #PAG2025? Be sure to make our @nanoporetech.com workshop, where you’ll hear how real-time, scalable, highly accurate sequencing is transforming:
🦋 Biodiversity research at scale
🐢 Endangered species conservation
🦠 Pathogen surveillance
🌱 T2T plant assemblies
bit.ly/3DqFncM
🦋 Biodiversity research at scale
🐢 Endangered species conservation
🦠 Pathogen surveillance
🌱 T2T plant assemblies
bit.ly/3DqFncM
Oxford Nanopore at PAG 2025
Visit Oxford Nanopore Technologies at PAG 2025
bit.ly
January 14, 2025 at 12:01 AM
Excited to present at the #PAG2025 @nanoporetech.com workshop tomorrow! Come along to hear more about how we incorporate ONT methylation sequencing for sea turtle conservation! 🐢🧬
Huge thanks to Dr. Elinor Karlsson for her amazing session at PAG yesterday on whole exome sequencing in at-risk companion dogs and clonal hematopoiesis! 🧬 🐾 Thanks to everyone who joined us for the workshop and reception—we had a great time connecting and learning more about your research. #PAG2025
January 14, 2025 at 10:12 PM
Huge thanks to Dr. Elinor Karlsson for her amazing session at PAG yesterday on whole exome sequencing in at-risk companion dogs and clonal hematopoiesis! 🧬 🐾 Thanks to everyone who joined us for the workshop and reception—we had a great time connecting and learning more about your research. #PAG2025
Vanita Haurheeram will be present at #PAG2025 to introduce URGI service to FAIR research data management. Template, guidelines, repositories, data portals tool, come see her at
POSTER80
POSTER80
January 13, 2025 at 12:45 AM
Vanita Haurheeram will be present at #PAG2025 to introduce URGI service to FAIR research data management. Template, guidelines, repositories, data portals tool, come see her at
POSTER80
POSTER80
#Pag2025 #pag32 Join us for our evening workshop on all things CartograPlant - supporting landscape scale analysis for georeferenced plant populations
This Sat night #PAG32! @brandonlind.bsky.social & I will be leading #CartograPlant workshop: genotype, phenotype, & environment for plant pops - #FAIRdata submission w/ @meghanmyles.bsky.social, mobile phenotyping w/ #TreeSnap, environmental layer integration, & analytics supported by @nextflow.io
January 12, 2025 at 1:27 AM
Great poster session at #PAG33. We were proud to have two EpiCypher presenters on the floor. Thanks to everyone who stopped by!
Download the posters here:
• Keith: https://explore.epicypher.com/posters/LRS-keith/pag2025
• Hannah: https://explore.epicypher.com/posters/DNAme/pag2025
Download the posters here:
• Keith: https://explore.epicypher.com/posters/LRS-keith/pag2025
• Hannah: https://explore.epicypher.com/posters/DNAme/pag2025
January 13, 2026 at 3:01 PM
Great poster session at #PAG33. We were proud to have two EpiCypher presenters on the floor. Thanks to everyone who stopped by!
Download the posters here:
• Keith: https://explore.epicypher.com/posters/LRS-keith/pag2025
• Hannah: https://explore.epicypher.com/posters/DNAme/pag2025
Download the posters here:
• Keith: https://explore.epicypher.com/posters/LRS-keith/pag2025
• Hannah: https://explore.epicypher.com/posters/DNAme/pag2025
I’ll be at PAG 2025 presenting on #longread #microbiome species profiling with a talk and a poster. I’ll also be at the PacBio booth some and the party (link to register in reshared post below). Come see me if you or a colleague will be attending. programs.pacb.com/pag2025
January 6, 2025 at 6:17 PM
I’ll be at PAG 2025 presenting on #longread #microbiome species profiling with a talk and a poster. I’ll also be at the PacBio booth some and the party (link to register in reshared post below). Come see me if you or a colleague will be attending. programs.pacb.com/pag2025
Good morning San Diego! Looking forward to all the great talks at #PAG2025 this week. Here are a few that I can recommend: Amazing plants, long reads, genome editing, microbiomes, bioifx education, DNA/RNA-mods, and assembly, annotation, & more! Make sure to stop by to say hi! 👋
January 10, 2025 at 2:59 PM
Good morning San Diego! Looking forward to all the great talks at #PAG2025 this week. Here are a few that I can recommend: Amazing plants, long reads, genome editing, microbiomes, bioifx education, DNA/RNA-mods, and assembly, annotation, & more! Make sure to stop by to say hi! 👋
Welcome to Day 2 of #PAG32 | #PAG2025. Today's cant miss session is Comparative Genomics hosted by Vijay Tiwari and John Lovell. It is 10:30 - 12:40 in Pacific A. pag.confex.com/pag/32/meeti...
Comparative Genomics
The availability of genomes for many plant and animal species provides opportunities to compare genomes. These comparisons provide insights into the variability of genome structure and content within ...
pag.confex.com
January 11, 2025 at 4:31 PM
Welcome to Day 2 of #PAG32 | #PAG2025. Today's cant miss session is Comparative Genomics hosted by Vijay Tiwari and John Lovell. It is 10:30 - 12:40 in Pacific A. pag.confex.com/pag/32/meeti...
🌲🧬🦀 Calling conservation genomics scientists! 🦀🧬🌲
@uconneeb.bsky.social & @nanoporetech.com's ORG.one hosts “Genomes for Conservation of Endangered Species” workshop at #PAG33. Submit abstracts by Monday, Oct 27! Join us to advance genomic resources for conservation. #PAG2025
@uconneeb.bsky.social & @nanoporetech.com's ORG.one hosts “Genomes for Conservation of Endangered Species” workshop at #PAG33. Submit abstracts by Monday, Oct 27! Join us to advance genomic resources for conservation. #PAG2025
October 16, 2025 at 9:00 PM
🌲🧬🦀 Calling conservation genomics scientists! 🦀🧬🌲
@uconneeb.bsky.social & @nanoporetech.com's ORG.one hosts “Genomes for Conservation of Endangered Species” workshop at #PAG33. Submit abstracts by Monday, Oct 27! Join us to advance genomic resources for conservation. #PAG2025
@uconneeb.bsky.social & @nanoporetech.com's ORG.one hosts “Genomes for Conservation of Endangered Species” workshop at #PAG33. Submit abstracts by Monday, Oct 27! Join us to advance genomic resources for conservation. #PAG2025
Maud Marty will be present at #PAG2025 to introduce forest tree data in FAIDARE, a plant data discovery portal. You want to discover the forest tree data generated by the french community, let her guide you through the ecosystem
January 13, 2025 at 12:58 AM
Maud Marty will be present at #PAG2025 to introduce forest tree data in FAIDARE, a plant data discovery portal. You want to discover the forest tree data generated by the french community, let her guide you through the ecosystem
#PAG32 | #PAG2025
Dr. Wattenburger
Genome Graph vs linear reference
- Genome Graph: Efficient representation of a population of genomes
www.nature.com/articles/s41...
Dr. Wattenburger
Genome Graph vs linear reference
- Genome Graph: Efficient representation of a population of genomes
www.nature.com/articles/s41...
Plant pangenomes for crop improvement, biodiversity and evolution - Nature Reviews Genetics
Plant pangenomes have had a transformative impact on crop enhancement, biodiversity conservation and evolutionary research. This Review delves into the application of plant pangenomes for underst...
www.nature.com
January 13, 2025 at 10:32 PM
#PAG32 | #PAG2025
Dr. Wattenburger
Genome Graph vs linear reference
- Genome Graph: Efficient representation of a population of genomes
www.nature.com/articles/s41...
Dr. Wattenburger
Genome Graph vs linear reference
- Genome Graph: Efficient representation of a population of genomes
www.nature.com/articles/s41...
Who’s all going to #PAG2025? Be sure to make our @nanoporetech.com workshop, where you’ll hear how real-time, scalable, highly accurate sequencing is transforming:
🦋 Biodiversity research at scale
🐢 Endangered species conservation
🦠 Pathogen surveillance
🌱 T2T plant assemblies
bit.ly/3DqFncM
🦋 Biodiversity research at scale
🐢 Endangered species conservation
🦠 Pathogen surveillance
🌱 T2T plant assemblies
bit.ly/3DqFncM
Oxford Nanopore at PAG 2025
Visit Oxford Nanopore Technologies at PAG 2025
bit.ly
January 4, 2025 at 4:30 PM
Who’s all going to #PAG2025? Be sure to make our @nanoporetech.com workshop, where you’ll hear how real-time, scalable, highly accurate sequencing is transforming:
🦋 Biodiversity research at scale
🐢 Endangered species conservation
🦠 Pathogen surveillance
🌱 T2T plant assemblies
bit.ly/3DqFncM
🦋 Biodiversity research at scale
🐢 Endangered species conservation
🦠 Pathogen surveillance
🌱 T2T plant assemblies
bit.ly/3DqFncM
But even this can be too much, especially since many genomic analyses often focus on genes. One great example for analyzing and visualizing how genes vary in a pangenome is GENESPACE (this came up over and over again at #PAG32 | #PAG2025) elifesciences.org/articles/785...
GENESPACE tracks regions of interest and gene copy number variation across multiple genomes
GENESPACE lets users track related chromosomal sequences across multiple reference genomes.
elifesciences.org
January 16, 2025 at 3:11 AM
But even this can be too much, especially since many genomic analyses often focus on genes. One great example for analyzing and visualizing how genes vary in a pangenome is GENESPACE (this came up over and over again at #PAG32 | #PAG2025) elifesciences.org/articles/785...