#PlantDatabase
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just-julieg.bsky.social
1/2
7Song, one of our country's foremost master herbalists, has released his online herbal database - and it's FREE! (Please consider donating if you use it, or just to support him. Link is in part two of this thread.)

@7song.bsky.social #herbalism #plantmedicine #plantdatabase #herbdatabase
Free Online Herbal Database
YouTube video by 7Song
www.youtube.com
April 7, 2025 at 8:40 PM
somssich.bsky.social
📜 PEO: Plant Expression Omnibus – a comparative transcriptomic database for 103 Archaeplastida

🧑‍🔬 Eugene Koh, Marek Mutwil, et al.

📔 The Plant Journal

🔗 onlinelibrary.wiley.com/doi/10.1111/...

#️⃣ (Feeds) #PlantScience #CoExpression #PlantTranscriptomics #PlantDatabase #PlantGenomics
https://onlinelibrary.wiley.com/doi/10.1111/tpj.16566
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onlinelibrary.wiley.com
December 13, 2023 at 2:14 PM
plantcellphysiol.bsky.social
#JSPP 2025 Awards

📢 PCP top cited research paper award goes to:

@sebcarrere.bsky.social, Jerome Verdier & Pascal Gamas for their #PlantDatabase, MtExpress - a RNAseq-based gene expression atlas for the model #Legume #Medicago truncatula 🌱🧬

🎉Félicitations! 👏

doi.org/10.1093/pcp/...

#PlantScience
Schematic diagram explaining the RNAseq analysis pipeline used to build MtExpress. First box: raw data & metadata from public databases (e.g. NCBI). Second box: Expression measure (STAR/Salmon) using the nf-core/rnaseq pipeline. Third box: data normalized with the TMM method from EdgeR package. Fourth box: Normalized values, gene annotations and dataset metadata are consolidated into a database made of parquet files accessible through an API to feed the web interface. Taken from figure 1 of Carrere et al. https://doi.org/10.1093/pcp/pcab110
February 11, 2025 at 1:43 PM
somssich.bsky.social
📜 RLKdb: A comprehensive curated receptor-like kinase family database

🧑‍🔬 Zhiyuan Yin, Jinding Liu, Daolong Dou

📔 @biorxiv-plants.bsky.social

🔗 www.biorxiv.org/content/10.1...

#️⃣ (Feeds) #PlantScience #PlantDatabase #CellSignalling #PlantSignalling
RLKdb: A comprehensive curated receptor-like kinase family database
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
www.biorxiv.org
December 20, 2023 at 8:07 AM