#PlantTranscriptomics
LightNews LightNews
somssich.bsky.social
📜 Investigating biological nitrogen fixation via single-cell transcriptomics

🧑‍🔬 Wendell J Pereira, @jeanmichelane.bsky.social, Matias Kirst, et al.

📔 @jxbotany.bsky.social

🔗 academic.oup.com/jxb/advance-...

#️⃣ #PlantScience #PlantSymbiosis #NitrogenFixation #Nodulation #PlantTranscriptomics
academic.oup.com
November 20, 2024 at 8:36 AM
somssich.bsky.social
📜 Best practices for the execution, analysis, and data storage of plant single- cell/nucleus transcriptomics

🧑‍🔬 Carolin Grones, Marc Libault, Bert De Rybel, et al.

📔 The Plant Cell

🔗 academic.oup.com/plcell/advan...

#️⃣ (Feeds) #PlantScience #PlantTranscriptomics #PlantSingleCellSeq #DataManagement
Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcript...
Abstract. Single-cell and single-nucleus RNA-sequencing (scRNA-seq and snRNA-seq) technologies capture the expression of plant genes at an unprecedented resolut
academic.oup.com
January 18, 2024 at 1:07 PM
somssich.bsky.social
📜 Incorporating gene expression and environment for genomic prediction in wheat

🧑‍🔬 Jia Liu, Shannon Dillon, et al.

📔 Frontiers in Plant Science

🔗 www.frontiersin.org/articles/10....

#️⃣ #PlantScience #Wheat #Cereals #PlantGenomics #PlantTranscriptomics #PlantEnvironment
Frontiers | Incorporating gene expression and environment for genomic prediction in wheat
www.frontiersin.org
May 28, 2025 at 4:22 AM
somssich.bsky.social
📜 The transcriptome landscape of developing barley seeds

🧑‍🔬 Martin Kovacik, Anna Nowicka, @simonrdg.bsky.social, Ales Pecinka, et al.

📔 The Plant Cell

🔗 academic.oup.com/plcell/advan...

#️⃣ #PlantScience #CropScience #Cereals #Barley #PlantTranscriptomics #Agronomy #PlantGenomics
The transcriptome landscape of developing barley seeds
A transcriptomic atlas for developing barley seeds provides in-depth insight into the gene regulation in embryo, endosperm, and seed maternal tissues.
academic.oup.com
April 19, 2024 at 6:58 AM
somssich.bsky.social
📜 PEO: Plant Expression Omnibus – a comparative transcriptomic database for 103 Archaeplastida

🧑‍🔬 Eugene Koh, Marek Mutwil, et al.

📔 The Plant Journal

🔗 onlinelibrary.wiley.com/doi/10.1111/...

#️⃣ (Feeds) #PlantScience #CoExpression #PlantTranscriptomics #PlantDatabase #PlantGenomics
https://onlinelibrary.wiley.com/doi/10.1111/tpj.16566
Wiley Online Library requires cookies for authentication and use of other site features; therefore, cookies must be enabled to browse the site. Detailed information on how Wiley uses cookies can be fo...
onlinelibrary.wiley.com
December 13, 2023 at 2:14 PM
somssich.bsky.social
📜 Lost in space: what single-cell RNA sequencing cannot tell you

🧑‍🔬 Kelvin Adema, Wouter Kohlen, et al.

📔 Trends in Plant Science

🔗 www.sciencedirect.com/science/arti...

#️⃣ #PlantScience #PlantGenomics #PlantTranscriptomics #SingleCell
Lost in space: what single-cell RNA sequencing cannot tell you
Plant scientists are rapidly integrating single-cell RNA sequencing (scRNA-seq) into their workflows. Maximizing the potential of scRNA-seq requires a…
www.sciencedirect.com
April 8, 2024 at 7:38 AM
somssich.bsky.social
📜 Transcriptome analysis reveals role of transcription factor WRKY70 in early N-hydroxy-pipecolic acid signaling

🧑‍🔬 Jessica Foret, Mary Beth Mudgett, et al.

📔 Plant Physiology

🔗 academic.oup.com/plphys/advan...

#️⃣ #PlantScience #PlantImmunity #PlantTranscriptomics
Transcriptome analysis reveals role of transcription factor WRKY70 in early N-hydroxy-pipecolic acid signaling
WRKY transcription factors partially independent of salicylic acid shape the early N-hydroxy-pipecolic acid transcriptional profile.
academic.oup.com
October 22, 2024 at 7:35 AM
somssich.bsky.social
📜 Next-generation mapping of the salicylic acid signaling hub and transcriptional cascade

🧑‍🔬 Jordan Powers, Xinnian Dong, et al.

📔 Molecular Plant

🔗 www.sciencedirect.com/science/arti...

#️⃣ #PlantScience #Phytohormones #PlantImmunity #PlantTranscriptomics
Next-generation mapping of the salicylic acid signaling hub and transcriptional cascade
For over 60 years, salicylic acid (SA) has been known as a plant immune signal required for basal and systemic acquired resistance (SAR). SA activates…
www.sciencedirect.com
August 29, 2024 at 7:41 AM
shihcheng.bsky.social
Discover broad cell identity conservation in plants with Orthologous Marker Gene Groups (OMGs)-a novel strategy for accurate cell-type ID across 1000s of species! 🧬🌱 #PlantTranscriptomics PMID:39747890, Nat Commun 2025, @NatureComms https://doi.org/10.1038/s41467-024-55755-0
February 16, 2025 at 5:10 AM