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prepub-singlecell.bsky.social
Pycea: a scverse toolkit for single-cell lineage tracing analysis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.30.763227v1
November 1, 2026 at 2:00 PM
prepub-singlecell.bsky.social
Single-cell foundation models transfer across deep evolutionary distances #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.28.762457v1
November 1, 2026 at 2:00 AM
mahogny83.bsky.social
Like #Rustlang, advanced #algorithms and want to do a #PhD? Help us combat #antimicrobialresistance by figuring out how represent and harvest the largest #microbial #singlecell datasets ever! www.henlab.org/blog/posts/2...
November 2, 2026 at 9:40 AM
prepub-singlecell.bsky.social
Multiscale Supervised Unbalanced Optimal Transport Flow Matching #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2605.16529
November 2, 2026 at 5:01 AM
prepub-singlecell.bsky.social
Feature-preserving interface reconstruction using piecewise circles and cusps #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2610.41305
November 2, 2026 at 5:01 AM
prepub-singlecell.bsky.social
Cellular context shapes the transcriptomic impact of somatic variants #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.28.760887v1
November 2, 2026 at 5:00 PM
prepub-singlecell.bsky.social
Simulation-free Unbalanced Dynamic Optimal Transport with General Growth Penalty #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2609.04710
November 2, 2026 at 5:00 AM
prepub-singlecell.bsky.social
Single-cell perturbation prediction near experimental reproducibility with GENESIS #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.30.763081v1
November 1, 2026 at 11:00 PM
prepub-singlecell.bsky.social
SpaceBlocks: an expert-supervised workflow for cohort-level spatial transcriptomics analysis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.30.763100v1
November 2, 2026 at 8:00 PM
prepub-singlecell.bsky.social
Gene Embedding Hub: a standardized resource for human gene representations #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.29.762818v1
November 2, 2026 at 5:00 AM
prepub-singlecell.bsky.social
scRM: A single-cell foundation model trained on scRNA-seq reads #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.24.761590v1
November 3, 2026 at 2:00 AM
prepub-singlecell.bsky.social
Pathological levels of α-synuclein increase basal mitophagy in Parkinson's dopamine neurons #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.29.762809v1
November 2, 2026 at 8:01 PM
prepub-singlecell.bsky.social
Structural Evolution of Neural Networks during Zebrafish Early Development #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.29.762732v1
November 1, 2026 at 2:00 AM
prepub-singlecell.bsky.social
Knowledge or sparsity? Gene set masks in a single-cell VAE #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-11542814/latest
November 2, 2026 at 8:01 AM
prepub-singlecell.bsky.social
Digital twins forecast individual immune trajectories #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.23.761347v1
October 31, 2026 at 2:01 AM
prepub-singlecell.bsky.social
Co$^2$ODE: Conditionally Coarse-Grained Model Discovery for Rewiring in Biochemical Networks #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2610.41634
November 2, 2026 at 5:00 AM
prepub-singlecell.bsky.social
Mouse spatial transcriptomics implicates the thalamus and cortex in autism and schizophrenia #SingleCell 🧪🧬🖥️
https://www.researchsquare.com/article/rs-11275405/latest
November 2, 2026 at 11:01 PM
prepub-singlecell.bsky.social
RNA assignment and segmentation geometry in Visium HD profiles of fibrostenotic Crohn's disease #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.27.762235v1
November 2, 2026 at 5:00 AM
prepub-singlecell.bsky.social
EMBER: Contextualized gene representations enable compositional prediction across cellular perturbations #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.28.762655v1
October 31, 2026 at 8:00 PM
prepub-singlecell.bsky.social
A single-cell multimodal foundation model enables cross modality analysis between transcriptome and chromatin #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.28.762297v1
November 3, 2026 at 2:00 AM
prepub-singlecell.bsky.social
RBC Deformability During Acute Lymphoblastic Leukemia Treatment #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.29.762767v1
October 31, 2026 at 2:01 AM
prepub-singlecell.bsky.social
Twenty-five new microsporidian genomes: Insights into ploidy, reproduction, and the group's pangenome #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.30.762710v1
November 2, 2026 at 5:00 AM
prepub-singlecell.bsky.social
Mechanistic gene-regulation-based trajectory inference with bowside #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.26.761800v1
October 31, 2026 at 5:00 AM
epigenometech.bsky.social
Epigenome Technologies offers an end-to-end Single-Cell Paired-Tag service, the first multiomic assay that simultaneously captures RNA expression and epigenetic marks from preparation to data analysis

#Epigenetics #SingleCell #PairedTag #Multiomics

u.epigenome.us/vyZjktjA
October 30, 2026 at 4:59 PM
prepub-singlecell.bsky.social
Gene regulatory logic underlying the differentiation of mixed lineages in human thymic epithelial cells #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.10.29.762771v1
November 3, 2026 at 2:01 AM