The miaDash Shiny app from the Bioconductor microbiome team is now an interactive tool on usegalaxy.eu: import, analyse and visualise microbiome data without writing a line of code.
https://galaxyproject.org/news/2026-10-21-miadash-interactive-tool/
##UseGalaxy ##GalaxyProject ##Microbiome ##miaDash
https://galaxyproject.org/news/2026-10-21-miadash-interactive-tool/
##UseGalaxy ##GalaxyProject ##Microbiome ##miaDash
October 28, 2026 at 5:43 PM
The miaDash Shiny app from the Bioconductor microbiome team is now an interactive tool on usegalaxy.eu: import, analyse and visualise microbiome data without writing a line of code.
https://galaxyproject.org/news/2026-10-21-miadash-interactive-tool/
##UseGalaxy ##GalaxyProject ##Microbiome ##miaDash
https://galaxyproject.org/news/2026-10-21-miadash-interactive-tool/
##UseGalaxy ##GalaxyProject ##Microbiome ##miaDash
Love seeing science make microbes less mysterious—congrats on launching DeepTaxa in QIIME 2! May your code run smoothly and your bugs be only microbial.
August 30, 2026 at 4:04 AM
Love seeing science make microbes less mysterious—congrats on launching DeepTaxa in QIIME 2! May your code run smoothly and your bugs be only microbial.
The gut microbiota were evaluated by the 16S rRNA amplicon sequencing. Relative abundance analyses, α-diversity and β-diversity were implemented using QIIME 2. (🧵 4/8)
August 28, 2026 at 8:31 AM
The gut microbiota were evaluated by the 16S rRNA amplicon sequencing. Relative abundance analyses, α-diversity and β-diversity were implemented using QIIME 2. (🧵 4/8)
방법: 본 연구에는 진정한 식이군(IgG 양성 식품 제외)에 속한 편두통 환자 52명과 위식이군(대안적인 IgG 음성 식품 제외)에 속한 대조군 46명이 포함되었다. 장내 미생물 군집은 16S rRNA 앰플리콘 시퀀싱을 통해 평가되었다. QIIME 2를 사용하여 상대적 풍부도 분석, α-다양성 및 β-다양성 분석을 수행했다. 조누린, IL-6, TNF-α 및 CGRP는 ELISA를 통해 측정했다. 편두통 증상 및 동반 질환을 조사하기 위해 설문조사를 실시했다. (🧵 2/4)
August 28, 2026 at 8:27 AM
방법: 본 연구에는 진정한 식이군(IgG 양성 식품 제외)에 속한 편두통 환자 52명과 위식이군(대안적인 IgG 음성 식품 제외)에 속한 대조군 46명이 포함되었다. 장내 미생물 군집은 16S rRNA 앰플리콘 시퀀싱을 통해 평가되었다. QIIME 2를 사용하여 상대적 풍부도 분석, α-다양성 및 β-다양성 분석을 수행했다. 조누린, IL-6, TNF-α 및 CGRP는 ELISA를 통해 측정했다. 편두통 증상 및 동반 질환을 조사하기 위해 설문조사를 실시했다. (🧵 2/4)
📥 Available in 7 formats (RDP, QIIME, DADA2, BLAST+ & more)
August 24, 2026 at 6:47 PM
📥 Available in 7 formats (RDP, QIIME, DADA2, BLAST+ & more)
Short Communication: “Assessing the Effectiveness of Propidium Monoazide on the Viable Bacterial Microbiome in Huanglongbing-Affected Citrus via 16S rRNA Amplicon Sequencing,” by Chuanyu Yang et al. Learn more: https://doi.org/10.1094/PBIOMES-08-25-0059-SC
April 22, 2026 at 7:45 PM
Short Communication: “Assessing the Effectiveness of Propidium Monoazide on the Viable Bacterial Microbiome in Huanglongbing-Affected Citrus via 16S rRNA Amplicon Sequencing,” by Chuanyu Yang et al. Learn more: https://doi.org/10.1094/PBIOMES-08-25-0059-SC
A lot is changing with our documentation, including a transition from a single-source to multiple sources. Learn more in this News post on the forum: forum.qiime2.org/t/the-qiime-...
#qiime2 #bioinformatics #documentation #jupyterbook
#qiime2 #bioinformatics #documentation #jupyterbook
July 2, 2025 at 12:42 PM
A lot is changing with our documentation, including a transition from a single-source to multiple sources. Learn more in this News post on the forum: forum.qiime2.org/t/the-qiime-...
#qiime2 #bioinformatics #documentation #jupyterbook
#qiime2 #bioinformatics #documentation #jupyterbook
For the QIIME 2 developers out there, here are the dependency version changes you can expect to see in the upcoming 2025.4 release - reach out if you need help updating your plugins!
forum.qiime2.org/t/qiime-2-20...
forum.qiime2.org/t/qiime-2-20...
QIIME 2 2025.4 breaking changes & environment files
Hello QIIME 2 Developer community! 🤓👋🏼 Below is the list of guaranteed interface changes, plugin API changes, and environment file updates for the 2025.4 QIIME 2 release. You can use the linked envir...
forum.qiime2.org
February 7, 2025 at 5:14 PM
For the QIIME 2 developers out there, here are the dependency version changes you can expect to see in the upcoming 2025.4 release - reach out if you need help updating your plugins!
forum.qiime2.org/t/qiime-2-20...
forum.qiime2.org/t/qiime-2-20...
This announcement is a little late (we're just starting to use bluesky), but #QIIME 2 2024.10 was release this October! Lots of exciting new features with many more still on the way!
forum.qiime2.org/t/qiime-2-20...
#microbiome
#bioinformatics
#microbiomesky
forum.qiime2.org/t/qiime-2-20...
#microbiome
#bioinformatics
#microbiomesky
QIIME 2 2024.10 is now available!
The QIIME 2 2024.10 release is now available! Thanks to everyone involved for their hard work! 🙌🏼 🎉 As a reminder, our next planned QIIME 2 release is scheduled for April 2025 (QIIME 2 2025.4), but p...
forum.qiime2.org
December 12, 2024 at 8:07 PM
This announcement is a little late (we're just starting to use bluesky), but #QIIME 2 2024.10 was release this October! Lots of exciting new features with many more still on the way!
forum.qiime2.org/t/qiime-2-20...
#microbiome
#bioinformatics
#microbiomesky
forum.qiime2.org/t/qiime-2-20...
#microbiome
#bioinformatics
#microbiomesky
Do you use Zenodo for archiving QIIME 2 data for publications? We now support loading QIIME 2 Results (Artifacts and Visualizations) directly from Zenodo with QIIME 2 View.
Check out the links in this Zenodo record, which references data from a new @cap-lab.bio pub:
doi.org/10.5281/zeno...
Check out the links in this Zenodo record, which references data from a new @cap-lab.bio pub:
doi.org/10.5281/zeno...
Upcycling Human Excrement: The Gut Microbiome to Soil Microbiome Axis (supporting data)
This archive contains the supporting data and code for Meilander et al., 2024: Upcycling Human Excrement: The Gut Microbiome to Soil Microbiome Axis. Clicking the links below will open the correspon...
doi.org
November 14, 2024 at 3:33 PM
Do you use Zenodo for archiving QIIME 2 data for publications? We now support loading QIIME 2 Results (Artifacts and Visualizations) directly from Zenodo with QIIME 2 View.
Check out the links in this Zenodo record, which references data from a new @cap-lab.bio pub:
doi.org/10.5281/zeno...
Check out the links in this Zenodo record, which references data from a new @cap-lab.bio pub:
doi.org/10.5281/zeno...
Happy Monday! Start your week off w/ a new QIIME 2 release: @qiime2 2024.2. There's a lot in this one, including new parallel actions in the shotgun distribution, a fancy new visualizer (summarize-plus), for summarizing feature tables & performance enhancements and minor fixes throughout. Enjoy!
QIIME 2 2024.2 is now available!
The QIIME 2 2024.2 release is now available! Thanks to everyone involved for their hard work! 🙌🏼 🎉 As a reminder, our next planned QIIME 2 release is scheduled for May 2023 (QIIME 2 2023.5), but plea...
forum.qiime2.org
February 19, 2024 at 6:16 PM
Happy Monday! Start your week off w/ a new QIIME 2 release: @qiime2 2024.2. There's a lot in this one, including new parallel actions in the shotgun distribution, a fancy new visualizer (summarize-plus), for summarizing feature tables & performance enhancements and minor fixes throughout. Enjoy!
#QIIME2 2023.9 is now available! Exciting updates include an alpha release of our shotgun #metagenomics distribution, fully integrated provenance replay within the framework, batched decontam analysis, and more! Thank you contributors!!
forum.qiime2.org/t/qiime-2-20...
forum.qiime2.org/t/qiime-2-20...
October 20, 2023 at 6:49 PM
#QIIME2 2023.9 is now available! Exciting updates include an alpha release of our shotgun #metagenomics distribution, fully integrated provenance replay within the framework, batched decontam analysis, and more! Thank you contributors!!
forum.qiime2.org/t/qiime-2-20...
forum.qiime2.org/t/qiime-2-20...
Obligatory #ASMicrobe selfie. I’m so excited to see what people are doing!
Find me if you want an It Depends™️ or QIIME 2 sticker.
(As in, “how should I analyze my data?”)
Find me if you want an It Depends™️ or QIIME 2 sticker.
(As in, “how should I analyze my data?”)
June 5, 2026 at 1:54 PM
Obligatory #ASMicrobe selfie. I’m so excited to see what people are doing!
Find me if you want an It Depends™️ or QIIME 2 sticker.
(As in, “how should I analyze my data?”)
Find me if you want an It Depends™️ or QIIME 2 sticker.
(As in, “how should I analyze my data?”)
Hi Friends (new and old)! I'm Justine, Im a reseracher with Johns Hopkins. I use comp. methods to study the human microbiome; 👶 ➡️🧑🦳. I like big data sets and finding limits on methods. I mostly use QIIME 2 and 🐍.
October 23, 2024 at 12:28 PM
Hi Friends (new and old)! I'm Justine, Im a reseracher with Johns Hopkins. I use comp. methods to study the human microbiome; 👶 ➡️🧑🦳. I like big data sets and finding limits on methods. I mostly use QIIME 2 and 🐍.
The QIIME 2 team has two variants on workshops with associated content
youtube.com/@qiime2?feat...
I’m less familiar but I think Pat Schloss has a Mothur series on his channel
youtube.com/@qiime2?feat...
I’m less familiar but I think Pat Schloss has a Mothur series on his channel
QIIME 2
The QIIME 2 YouTube channel.
youtube.com
October 5, 2024 at 3:39 AM
The QIIME 2 team has two variants on workshops with associated content
youtube.com/@qiime2?feat...
I’m less familiar but I think Pat Schloss has a Mothur series on his channel
youtube.com/@qiime2?feat...
I’m less familiar but I think Pat Schloss has a Mothur series on his channel
#ISME14 Knight: <a href="http://www.microbio.me/qiime/" class="hover:underline text-blue-600 dark:text-sky-400 no-card-link" target="_blank" rel="noopener" data-link="bsky">http://www.microbio.me/qiime/
Time to update your account! - The Microsetta Initiative
The American & British Gut projects now run through The M...
www.microbio.me
November 13, 2024 at 11:03 PM
#ISME14 Knight: <a href="http://www.microbio.me/qiime/" class="hover:underline text-blue-600 dark:text-sky-400 no-card-link" target="_blank" rel="noopener" data-link="bsky">http://www.microbio.me/qiime/
q2-longitudinal: a QIIME 2 plugin for longitudinal and paired-sample analyses of microbiome data https://www.biorxiv.org/content/early/2017/11/22/223974 @gregcaporaso @jairideout
q2-longitudinal: a QIIME 2 plugin for longitudinal and pa...
Studies of host-associated and environmental microbiomes ...
www.biorxiv.org
November 13, 2024 at 4:29 PM
q2-longitudinal: a QIIME 2 plugin for longitudinal and paired-sample analyses of microbiome data https://www.biorxiv.org/content/early/2017/11/22/223974 @gregcaporaso @jairideout
I (and other people in our lab) still use QIIME 2 very happily - the team behind have been staying quite well up to date with implementing plugins of new tools as they come out, etc. But I do get the sense (at conferences etc.) that lots of people are moving away from amplicon.
February 8, 2025 at 6:47 PM
I (and other people in our lab) still use QIIME 2 very happily - the team behind have been staying quite well up to date with implementing plugins of new tools as they come out, etc. But I do get the sense (at conferences etc.) that lots of people are moving away from amplicon.