We present our MetaProViz #Rpackage for #metabolomics analysis & prior knowledge integration to generate mechanistic hypotheses on how metabolic changes affect metabolite classes, pathways & environment interaction
🔗
www.biorxiv.org/content/10.1...
📦
saezlab.github.io/MetaProViz/
🧵 Thread ⬇️
🔗
www.biorxiv.org/content/10.1...
📦
saezlab.github.io/MetaProViz/
🧵 Thread ⬇️
August 25, 2025 at 7:07 AM
We present our MetaProViz #Rpackage for #metabolomics analysis & prior knowledge integration to generate mechanistic hypotheses on how metabolic changes affect metabolite classes, pathways & environment interaction
🔗
www.biorxiv.org/content/10.1...
📦
saezlab.github.io/MetaProViz/
🧵 Thread ⬇️
🔗
www.biorxiv.org/content/10.1...
📦
saezlab.github.io/MetaProViz/
🧵 Thread ⬇️
May was a big month for #RStats! 186 new packages landed on CRAN.
We've got the top 40 highlighted on R Works, featuring an image from the GencoDymo2 package (human and mouse genomes!).
Check it out here: rworks.dev/posts/may-20...
We've got the top 40 highlighted on R Works, featuring an image from the GencoDymo2 package (human and mouse genomes!).
Check it out here: rworks.dev/posts/may-20...
May 2025 Top 40 New CRAN Packages – R Works
An attempt to capture the depth and breadth of what’s new on CRAN. - One Hundred seventy-six new packages made it to CRAN in May. Here are my Top 40 picks in eighteen categories: Climate Science, Comp...
rworks.dev
June 30, 2025 at 7:13 PM
Hello. Are you (🫵) an High Court of Australia watcher, and also an R user?
If so, please check out ✨hcdb✨ !!!
It's an R Package, with tonnes of High Court data in it.
Check it out! (tell me what's wrong)
github.com/palesl/hcdb
If so, please check out ✨hcdb✨ !!!
It's an R Package, with tonnes of High Court data in it.
Check it out! (tell me what's wrong)
github.com/palesl/hcdb
GitHub - palesl/hcdb: The High Court of Australia Database (RPackage)
The High Court of Australia Database (RPackage). Contribute to palesl/hcdb development by creating an account on GitHub.
github.com
June 9, 2026 at 11:35 AM
Hello. Are you (🫵) an High Court of Australia watcher, and also an R user?
If so, please check out ✨hcdb✨ !!!
It's an R Package, with tonnes of High Court data in it.
Check it out! (tell me what's wrong)
github.com/palesl/hcdb
If so, please check out ✨hcdb✨ !!!
It's an R Package, with tonnes of High Court data in it.
Check it out! (tell me what's wrong)
github.com/palesl/hcdb
June 19, 2025 at 7:00 PM
🎤 Excited to share that I presented at useR! 2025 in Durham, NC! 🇺🇸
Gave a talk on cardinalR: Generating interesting high-dimensional data structures 🎤
📽️ jayani-user2025.netlify.app
#useR2025 #RStats #DataScience #HighDimensionalData #Visualization #RPackage
Gave a talk on cardinalR: Generating interesting high-dimensional data structures 🎤
📽️ jayani-user2025.netlify.app
#useR2025 #RStats #DataScience #HighDimensionalData #Visualization #RPackage
August 9, 2025 at 9:25 PM
🎤 Excited to share that I presented at useR! 2025 in Durham, NC! 🇺🇸
Gave a talk on cardinalR: Generating interesting high-dimensional data structures 🎤
📽️ jayani-user2025.netlify.app
#useR2025 #RStats #DataScience #HighDimensionalData #Visualization #RPackage
Gave a talk on cardinalR: Generating interesting high-dimensional data structures 🎤
📽️ jayani-user2025.netlify.app
#useR2025 #RStats #DataScience #HighDimensionalData #Visualization #RPackage
Every R package deserves more than just unit tests.
Let’s break down the four essential layers of testing for robust, reliable code.
👇
#rstats #testing #rpackage #opensource #quality
Let’s break down the four essential layers of testing for robust, reliable code.
👇
#rstats #testing #rpackage #opensource #quality
July 9, 2025 at 12:42 PM
Every R package deserves more than just unit tests.
Let’s break down the four essential layers of testing for robust, reliable code.
👇
#rstats #testing #rpackage #opensource #quality
Let’s break down the four essential layers of testing for robust, reliable code.
👇
#rstats #testing #rpackage #opensource #quality
To finish the second day of the Konstanz School of Collective Behaviour 2025 (#kscb2025), a great #tutorial by Michael Chimento @mchimento on #Network-Based #diffusion #analysis (#nbda) and his #rpackage #stbayes.
@cbehav.bsky.social
https://www.exc.uni-konstanz.de/kscb/
@cbehav.bsky.social
https://www.exc.uni-konstanz.de/kscb/
July 23, 2025 at 2:38 PM
To finish the second day of the Konstanz School of Collective Behaviour 2025 (#kscb2025), a great #tutorial by Michael Chimento @mchimento on #Network-Based #diffusion #analysis (#nbda) and his #rpackage #stbayes.
@cbehav.bsky.social
https://www.exc.uni-konstanz.de/kscb/
@cbehav.bsky.social
https://www.exc.uni-konstanz.de/kscb/
Every #TidyTuesday I am amazed by what #DataViz Queen @nrennie.bsky.social can create in #ggplot2!
Her TidyTuesday cookbook 📕🍜 is available here: nrennie.rbind.io/art-of-viz/ and goes into best practices and tricks. I also love the GIFs she creates using the camcorder #Rpackage!
Her TidyTuesday cookbook 📕🍜 is available here: nrennie.rbind.io/art-of-viz/ and goes into best practices and tricks. I also love the GIFs she creates using the camcorder #Rpackage!
February 24, 2026 at 8:06 AM
Every #TidyTuesday I am amazed by what #DataViz Queen @nrennie.bsky.social can create in #ggplot2!
Her TidyTuesday cookbook 📕🍜 is available here: nrennie.rbind.io/art-of-viz/ and goes into best practices and tricks. I also love the GIFs she creates using the camcorder #Rpackage!
Her TidyTuesday cookbook 📕🍜 is available here: nrennie.rbind.io/art-of-viz/ and goes into best practices and tricks. I also love the GIFs she creates using the camcorder #Rpackage!
We are excited to announce that tidypopgen – a new package for rapid population genetic workflows in R – is now available at evolecolgroup.github.io/tidypopgen/ 🧬💻 Read more in the preprint describing its features here: www.biorxiv.org/content/10.1... #popgen #Rpackage #genetics 1/2
Tidy Population Genetics
We provide a tidy grammar of population genetics, facilitating the manipulation and analysis of data on biallelic single nucleotide polymorphisms (SNPs). `tidypopgen` scales to very large genetic data...
evolecolgroup.github.io
June 20, 2025 at 12:19 PM
We are excited to announce that tidypopgen – a new package for rapid population genetic workflows in R – is now available at evolecolgroup.github.io/tidypopgen/ 🧬💻 Read more in the preprint describing its features here: www.biorxiv.org/content/10.1... #popgen #Rpackage #genetics 1/2
🎉 New paper out with @nyniane-sp.bsky.social and @idriss-pelletan.bsky.social!
Check out the #SOUPE method to create phylogenetically diverse samples.
It's freely available in @methodsinecoevol.bsky.social with a dedicated #Rpackage
#OpenAccess #OpenScience
Check out the #SOUPE method to create phylogenetically diverse samples.
It's freely available in @methodsinecoevol.bsky.social with a dedicated #Rpackage
#OpenAccess #OpenScience
My first paper is out in @methodsinecoevol.bsky.social : doi.org/10.1111/2041...
With @idriss-pelletan.bsky.social and @paulineprovini.bsky.social, we developed SOUPE, a new method and R package to evaluate the phylogenetic representativeness of taxonomic samples, and help create optimized samples.
With @idriss-pelletan.bsky.social and @paulineprovini.bsky.social, we developed SOUPE, a new method and R package to evaluate the phylogenetic representativeness of taxonomic samples, and help create optimized samples.
SOUPE: An R package to test and optimise the phylogenetic and ecological representativeness of a taxonomic sample
In the field of evolutionary biology, the selection of a phylogenetically representative sample is a crucial step to have a complete and accurate understanding of the studied group and the evoluti...
doi.org
May 27, 2026 at 8:32 AM
🎉 New paper out with @nyniane-sp.bsky.social and @idriss-pelletan.bsky.social!
Check out the #SOUPE method to create phylogenetically diverse samples.
It's freely available in @methodsinecoevol.bsky.social with a dedicated #Rpackage
#OpenAccess #OpenScience
Check out the #SOUPE method to create phylogenetically diverse samples.
It's freely available in @methodsinecoevol.bsky.social with a dedicated #Rpackage
#OpenAccess #OpenScience
🎉 Excited to announce that typeR is now on CRAN!
typeR simulates typing animations for R scripts - perfect for live coding demos and presentations.
Install: install.packages("typeR")
Docs: fgazzelloni.github.io/typeR/
#rstats #RPackage
typeR simulates typing animations for R scripts - perfect for live coding demos and presentations.
Install: install.packages("typeR")
Docs: fgazzelloni.github.io/typeR/
#rstats #RPackage
typeR - Typing Animation for R Code
Simulate typing animation for R scripts, R Markdown, and Quarto documents with optional live code execution.
fgazzelloni.github.io
February 5, 2026 at 8:29 AM
🎉 Excited to announce that typeR is now on CRAN!
typeR simulates typing animations for R scripts - perfect for live coding demos and presentations.
Install: install.packages("typeR")
Docs: fgazzelloni.github.io/typeR/
#rstats #RPackage
typeR simulates typing animations for R scripts - perfect for live coding demos and presentations.
Install: install.packages("typeR")
Docs: fgazzelloni.github.io/typeR/
#rstats #RPackage
Hey #Rstats!
Tired of manually adding @importFrom all over your 📦 #Rpackage?
Say hello to {autoimport}, now on CRAN! 🚀
It parses your code and adds the necessary tags automatically, at the function or package level.
Less typing, more coding! 🔥
github.com/DanChaltiel/...
Tired of manually adding @importFrom all over your 📦 #Rpackage?
Say hello to {autoimport}, now on CRAN! 🚀
It parses your code and adds the necessary tags automatically, at the function or package level.
Less typing, more coding! 🔥
github.com/DanChaltiel/...
February 7, 2025 at 7:47 AM
Hey #Rstats!
Tired of manually adding @importFrom all over your 📦 #Rpackage?
Say hello to {autoimport}, now on CRAN! 🚀
It parses your code and adds the necessary tags automatically, at the function or package level.
Less typing, more coding! 🔥
github.com/DanChaltiel/...
Tired of manually adding @importFrom all over your 📦 #Rpackage?
Say hello to {autoimport}, now on CRAN! 🚀
It parses your code and adds the necessary tags automatically, at the function or package level.
Less typing, more coding! 🔥
github.com/DanChaltiel/...
#Rpackage #qualityanalysis
New update for R package “resquin” – More functions for better response quality analysis
The R package “resquin,” short for “response quality indicators,” has been updated and now offers even more options for analyzing and evaluating response quality.
New update for R package “resquin” – More functions for better response quality analysis
The R package “resquin,” short for “response quality indicators,” has been updated and now offers even more options for analyzing and evaluating response quality.
July 25, 2025 at 1:00 PM
#Rpackage #qualityanalysis
New update for R package “resquin” – More functions for better response quality analysis
The R package “resquin,” short for “response quality indicators,” has been updated and now offers even more options for analyzing and evaluating response quality.
New update for R package “resquin” – More functions for better response quality analysis
The R package “resquin,” short for “response quality indicators,” has been updated and now offers even more options for analyzing and evaluating response quality.
#Freshwater #Ecologists - check out this new #RPackage called fwtraits which integrates parameters from FWE www.freshwaterecology.info
Link: www.sciencedirect.com/science/arti...
#FreshwaterEcology #RStat #Statistics #BigData 🌍
Link: www.sciencedirect.com/science/arti...
#FreshwaterEcology #RStat #Statistics #BigData 🌍
Introducing fwtraits – an R package for obtaining freshwater biodiversity trait information
Species ecological parameters are crucial for understanding the functional responses to environmental perturbations, aiding in informing conservation …
www.sciencedirect.com
November 8, 2025 at 1:23 PM
#Freshwater #Ecologists - check out this new #RPackage called fwtraits which integrates parameters from FWE www.freshwaterecology.info
Link: www.sciencedirect.com/science/arti...
#FreshwaterEcology #RStat #Statistics #BigData 🌍
Link: www.sciencedirect.com/science/arti...
#FreshwaterEcology #RStat #Statistics #BigData 🌍
🎲 Want to add a little playfulness to your R sessions? Check out {fun}- a package full of classic games (Minesweeper, sliding puzzles, Gomoku) and quirky utilities all in R.
Try demo(package = "fun") to see what it can do!
🔗 cran.r-project.org/package=fun
#rstats #RPackage #UseR #FunWithR
Try demo(package = "fun") to see what it can do!
🔗 cran.r-project.org/package=fun
#rstats #RPackage #UseR #FunWithR
The Comprehensive R Archive Network
cran.r-project.org
October 5, 2025 at 10:30 PM
🎲 Want to add a little playfulness to your R sessions? Check out {fun}- a package full of classic games (Minesweeper, sliding puzzles, Gomoku) and quirky utilities all in R.
Try demo(package = "fun") to see what it can do!
🔗 cran.r-project.org/package=fun
#rstats #RPackage #UseR #FunWithR
Try demo(package = "fun") to see what it can do!
🔗 cran.r-project.org/package=fun
#rstats #RPackage #UseR #FunWithR
From the upcoming #AppsPlantSci Phylogenetic Networks issue
tanggle: An R package for the visualization of #phylogenetic networks (by Schliep, Vidal-Garcia, Solis-Lemus, et al)
bsapubs.onlinelibrary.wiley.com/doi/full/10.... @uwdsi.bsky.social #Rpackage #ggtree #macroevolution #evolution
tanggle: An R package for the visualization of #phylogenetic networks (by Schliep, Vidal-Garcia, Solis-Lemus, et al)
bsapubs.onlinelibrary.wiley.com/doi/full/10.... @uwdsi.bsky.social #Rpackage #ggtree #macroevolution #evolution
June 4, 2026 at 3:34 PM
From the upcoming #AppsPlantSci Phylogenetic Networks issue
tanggle: An R package for the visualization of #phylogenetic networks (by Schliep, Vidal-Garcia, Solis-Lemus, et al)
bsapubs.onlinelibrary.wiley.com/doi/full/10.... @uwdsi.bsky.social #Rpackage #ggtree #macroevolution #evolution
tanggle: An R package for the visualization of #phylogenetic networks (by Schliep, Vidal-Garcia, Solis-Lemus, et al)
bsapubs.onlinelibrary.wiley.com/doi/full/10.... @uwdsi.bsky.social #Rpackage #ggtree #macroevolution #evolution
TreeMig framework ver. 1.0: an R package with GUI to simulate spatio-temporal forest dynamics vist.ly/5bsm6 #Rpackage #Modelling #VegetationDynamics
July 20, 2026 at 8:23 AM
TreeMig framework ver. 1.0: an R package with GUI to simulate spatio-temporal forest dynamics vist.ly/5bsm6 #Rpackage #Modelling #VegetationDynamics
Need to model spatial & temporal data in R? Check out 4DModeller—it uses Bayesian inference & INLA to handle complex patterns over time.
Great for species distribution, climate trends, or epidemiology!
#Rstats #Rpackage
Great for species distribution, climate trends, or epidemiology!
#Rstats #Rpackage
4DModeller: a spatio-temporal modelling package
Aiken et al., (2025). 4DModeller: a spatio-temporal modelling package. Journal of Open Source Software, 10(106), 7047, https://doi.org/10.21105/joss.07047
joss.theoj.org
February 25, 2025 at 5:31 PM
Hi, I’m this week’s curator, Josi! I‘m a PhD student in statistical genetics 🧬 and use #RStats to do #SEM. I dabble in #DataViz and recently wrote my first #Rpackage. My hobbies are reading #Fantasy books 📚 and #maximalism. You may catch me at a conference matching my outfit to my poster 🤓🧜🏽♀️ #rladies
February 23, 2026 at 5:51 PM
Hi, I’m this week’s curator, Josi! I‘m a PhD student in statistical genetics 🧬 and use #RStats to do #SEM. I dabble in #DataViz and recently wrote my first #Rpackage. My hobbies are reading #Fantasy books 📚 and #maximalism. You may catch me at a conference matching my outfit to my poster 🤓🧜🏽♀️ #rladies
Today's Quan Gen Journal Club : a paper by @pdevillemereuil.bsky.social & @lmchev.bsky.social that presents the new #Rpackage Reacnorm to partition phenotypic & genetic var in reaction norms - it was tough but worth it !
peercommunityjournal.org/articles/10....
#evolbiol #phenplas #quantgen 📈📉
peercommunityjournal.org/articles/10....
#evolbiol #phenplas #quantgen 📈📉
Partitioning the phenotypic and genetic variances of reaction norms
peercommunityjournal.org
March 7, 2025 at 3:38 PM
Today's Quan Gen Journal Club : a paper by @pdevillemereuil.bsky.social & @lmchev.bsky.social that presents the new #Rpackage Reacnorm to partition phenotypic & genetic var in reaction norms - it was tough but worth it !
peercommunityjournal.org/articles/10....
#evolbiol #phenplas #quantgen 📈📉
peercommunityjournal.org/articles/10....
#evolbiol #phenplas #quantgen 📈📉
I have brought some hex sticker for my R package 📦 {pretestcad} to give out during the useR! 2025 conference at Duke University Durham, North Carolina, USA.
Hope to meet new people and catch up with familar ones there.
cran.r-project.org/web/packages...
#rstats #rcommunity #rpackage #useR2025
Hope to meet new people and catch up with familar ones there.
cran.r-project.org/web/packages...
#rstats #rcommunity #rpackage #useR2025
August 7, 2025 at 7:20 PM
I have brought some hex sticker for my R package 📦 {pretestcad} to give out during the useR! 2025 conference at Duke University Durham, North Carolina, USA.
Hope to meet new people and catch up with familar ones there.
cran.r-project.org/web/packages...
#rstats #rcommunity #rpackage #useR2025
Hope to meet new people and catch up with familar ones there.
cran.r-project.org/web/packages...
#rstats #rcommunity #rpackage #useR2025
✨ Check out {cli} - an R package for beautiful command-line interfaces!
Use it to add headings, alerts, lists, progress bars & more, with built-in colors and themes. Perfect for making console output clear and stylish.
🔗 github.com/r-lib/cli
#rstats #RPackage #cli
Use it to add headings, alerts, lists, progress bars & more, with built-in colors and themes. Perfect for making console output clear and stylish.
🔗 github.com/r-lib/cli
#rstats #RPackage #cli
GitHub - r-lib/cli: Tools for making beautiful & useful command line interfaces
Tools for making beautiful & useful command line interfaces - r-lib/cli
github.com
September 30, 2025 at 11:01 PM
✨ Check out {cli} - an R package for beautiful command-line interfaces!
Use it to add headings, alerts, lists, progress bars & more, with built-in colors and themes. Perfect for making console output clear and stylish.
🔗 github.com/r-lib/cli
#rstats #RPackage #cli
Use it to add headings, alerts, lists, progress bars & more, with built-in colors and themes. Perfect for making console output clear and stylish.
🔗 github.com/r-lib/cli
#rstats #RPackage #cli
Favorite R package discovery of the day... tidyr::crossing()
This package is great for making a dataframe that includes all possible unique combinations of 2+ dataframes you are merging, or multiple vectors!
#rpackage #stats #rstats #rforecologists
This package is great for making a dataframe that includes all possible unique combinations of 2+ dataframes you are merging, or multiple vectors!
#rpackage #stats #rstats #rforecologists
September 22, 2023 at 8:39 PM
Favorite R package discovery of the day... tidyr::crossing()
This package is great for making a dataframe that includes all possible unique combinations of 2+ dataframes you are merging, or multiple vectors!
#rpackage #stats #rstats #rforecologists
This package is great for making a dataframe that includes all possible unique combinations of 2+ dataframes you are merging, or multiple vectors!
#rpackage #stats #rstats #rforecologists
The licoread #rpackage helps you import raw #Licor datafiles into #R, and is now on #CRAN. Conveniently it seemlessly works together with the #fluxible package to calculate your fluxes.
@jogaudard.bsky.social is on a roll!
#rstats #li-cor
@jogaudard.bsky.social is on a roll!
#rstats #li-cor
Just got the licoread R package on CRAN!
It imports raw files from LI-COR gas analyzers and turns them into a #fluxible friendly dataframe
#rstats @li-corenv.bsky.social
jogaudard.github.io/licoread/
It imports raw files from LI-COR gas analyzers and turns them into a #fluxible friendly dataframe
#rstats @li-corenv.bsky.social
jogaudard.github.io/licoread/
Reads Raw Files from Li-COR Gas Analyzers
Reads raw files from Li-COR gas analyzers and produces a dataframe that can directly be used with fluxible <https://cran.r-project.org/package=fluxible>.
jogaudard.github.io
May 12, 2025 at 1:58 PM
Great talk @clementviolet.bsky.social given during the #BIOcean5D general assembly @ICM-CSIC! So much work went into looking up all those marine NIS native origins and building the ✨ Shiny app.Can’t wait to see the future #Rpackage #marineecology #ultraviolet 🧪🦀🐚🌱🪸 @ifremer.bsky.social
February 11, 2025 at 3:32 PM
Great talk @clementviolet.bsky.social given during the #BIOcean5D general assembly @ICM-CSIC! So much work went into looking up all those marine NIS native origins and building the ✨ Shiny app.Can’t wait to see the future #Rpackage #marineecology #ultraviolet 🧪🦀🐚🌱🪸 @ifremer.bsky.social