youtu.be/YRHlb0dGyNc?... Slicermorph has a photogrammetry module, can’t wait to test it out!
SlicerMorph Photogrammetry Module
YouTube video by SlicerMorph SlicerMorph
youtu.be
February 19, 2025 at 6:47 PM
youtu.be/YRHlb0dGyNc?... Slicermorph has a photogrammetry module, can’t wait to test it out!
Just wrapped up a week of SlicerMorph/MorphoDepot/MorphoCloud work with @jaimiagray.bsky.social, @cmdonatelli.bsky.social and a great team of folks.
This is Enophrys taurina with a damaged preopercular spine. Fighting or defense?
🧪🐡
This is Enophrys taurina with a damaged preopercular spine. Fighting or defense?
🧪🐡
October 11, 2025 at 10:25 PM
Just wrapped up a week of SlicerMorph/MorphoDepot/MorphoCloud work with @jaimiagray.bsky.social, @cmdonatelli.bsky.social and a great team of folks.
This is Enophrys taurina with a damaged preopercular spine. Fighting or defense?
🧪🐡
This is Enophrys taurina with a damaged preopercular spine. Fighting or defense?
🧪🐡
The final NSF sponsored Slicer and SlicerMorph workshop getting started at Friday Harbor Labs.
Awesome to have both Slicer developers and power users of other visualization software in the same room.
Awesome to have both Slicer developers and power users of other visualization software in the same room.
October 2, 2023 at 5:40 PM
The final NSF sponsored Slicer and SlicerMorph workshop getting started at Friday Harbor Labs.
Awesome to have both Slicer developers and power users of other visualization software in the same room.
Awesome to have both Slicer developers and power users of other visualization software in the same room.
The SlicerMorph workshop continues. Steve Pieper has added color by segment to the volume renderer. @karlycohen.bsky.social is checking the quality on the deepest fish ever CT scanned.
#ScanAllFishes
#ScanAllFishes
October 6, 2023 at 4:33 AM
The SlicerMorph workshop continues. Steve Pieper has added color by segment to the volume renderer. @karlycohen.bsky.social is checking the quality on the deepest fish ever CT scanned.
#ScanAllFishes
#ScanAllFishes
Well hello Friday Harbor! So excited to be here at the stunning Friday Harbor Laboratories. Ready to go for the 3DSlicerApp SlicerMorph "train the trainers" week. Couldn't ask for a better location 🤩
October 2, 2023 at 1:40 AM
Well hello Friday Harbor! So excited to be here at the stunning Friday Harbor Laboratories. Ready to go for the 3DSlicerApp SlicerMorph "train the trainers" week. Couldn't ask for a better location 🤩
SlicerMorph Photogrammetry: An Open-Source Photogrammetry Workflow for Reconstructing 3D Models https://www.biorxiv.org/content/10.1101/2025.03.07.641939v1
March 13, 2025 at 5:31 AM
SlicerMorph Photogrammetry: An Open-Source Photogrammetry Workflow for Reconstructing 3D Models https://www.biorxiv.org/content/10.1101/2025.03.07.641939v1
After an excellent SlicerMorph workshop I flew Andras Lasso to Point Roberts for his flight home from Vancouver.
October 7, 2023 at 11:08 PM
After an excellent SlicerMorph workshop I flew Andras Lasso to Point Roberts for his flight home from Vancouver.
That’s a wrap on a great week learning more of the ins and out of 3D Slicer. Thank you to the SlicerMorph team for teaching and Andras Lasso for sharing his expertise.
Made great progress on my extensions and can’t wait to bring home what I’ve learned.
Made great progress on my extensions and can’t wait to bring home what I’ve learned.
October 8, 2023 at 2:20 AM
That’s a wrap on a great week learning more of the ins and out of 3D Slicer. Thank you to the SlicerMorph team for teaching and Andras Lasso for sharing his expertise.
Made great progress on my extensions and can’t wait to bring home what I’ve learned.
Made great progress on my extensions and can’t wait to bring home what I’ve learned.
🧪 SlicerMorph workshop by A. Murat Maga, with demos by Chi Zhang (photogrammetry), Rachel (segmentation) and Sara Rolfe (AI) the UW Dept. of Pediatrics www.peds.uw.edu & Seattle Children's Research Institute
#SICB2024 @sicbjournals.bsky.social
#SICB2024 @sicbjournals.bsky.social
January 4, 2024 at 12:33 PM
🧪 SlicerMorph workshop by A. Murat Maga, with demos by Chi Zhang (photogrammetry), Rachel (segmentation) and Sara Rolfe (AI) the UW Dept. of Pediatrics www.peds.uw.edu & Seattle Children's Research Institute
#SICB2024 @sicbjournals.bsky.social
#SICB2024 @sicbjournals.bsky.social
Hi Doug! Have to restrict ourselves to neurocrania for this so wee bones don't move relative to one another!
Thanks, I made four tables to hold skulls and critter bits. Spousal harmony.
Slicer, with the SlicerMorph module is AMAZING. I swapped out from Amira 5 years ago and am so happy.
Thanks, I made four tables to hold skulls and critter bits. Spousal harmony.
Slicer, with the SlicerMorph module is AMAZING. I swapped out from Amira 5 years ago and am so happy.
June 11, 2025 at 10:41 PM
Hi Doug! Have to restrict ourselves to neurocrania for this so wee bones don't move relative to one another!
Thanks, I made four tables to hold skulls and critter bits. Spousal harmony.
Slicer, with the SlicerMorph module is AMAZING. I swapped out from Amira 5 years ago and am so happy.
Thanks, I made four tables to hold skulls and critter bits. Spousal harmony.
Slicer, with the SlicerMorph module is AMAZING. I swapped out from Amira 5 years ago and am so happy.
Day 3 of training us trainers and we are eyeballs deep in 3DSlicerApp and SlicerMorph and learning so much from Murat and Sara! AND still time to enjoy the Friday Harbor scenery and some fun critters ⛵🌞
October 6, 2023 at 1:32 AM
Day 3 of training us trainers and we are eyeballs deep in 3DSlicerApp and SlicerMorph and learning so much from Murat and Sara! AND still time to enjoy the Friday Harbor scenery and some fun critters ⛵🌞
6 days of 3DSlicerApp & SlicerMorph done and dusted and oh boy have I learned some neat new Slicer tricks to unleash upon Florida when I get back 😎 Thanks to Adam and Murat for hosting! Before I return, I'm hanging around Friday Harbor Labs a while longer....
October 9, 2023 at 3:39 AM
6 days of 3DSlicerApp & SlicerMorph done and dusted and oh boy have I learned some neat new Slicer tricks to unleash upon Florida when I get back 😎 Thanks to Adam and Murat for hosting! Before I return, I'm hanging around Friday Harbor Labs a while longer....
I will be showing people how to use free, open source software to reconstruct 3D anatomy.
SlicerMorph and 3D Slicer!
SlicerMorph and 3D Slicer!
February 13, 2025 at 9:32 PM
I will be showing people how to use free, open source software to reconstruct 3D anatomy.
SlicerMorph and 3D Slicer!
SlicerMorph and 3D Slicer!
It's a nightmare without the SlicerMorph extension, at least then you can neatly rescale as you go! It is still hilariously RAM hungry...
December 3, 2024 at 11:10 AM
It's a nightmare without the SlicerMorph extension, at least then you can neatly rescale as you go! It is still hilariously RAM hungry...
The authors included RRIDs in their None paper! Thanks for making your methods matter! #ReproducibleResearch #methodsmatter #reproducibility
SlicerMorph photogrammetry: an open-source photogrammetry workflow for reconstructing 3D models
doi.org
September 21, 2025 at 7:00 AM
The authors included RRIDs in their None paper! Thanks for making your methods matter! #ReproducibleResearch #methodsmatter #reproducibility
Oh, didn't know SlicerMorph helped with that. Is that simple Downsampling at the point of loading data?
I don't mind a program being RAM hungry, but I would like some fail safes/checks so it doesn't crash the whole computer when it overflows.
I don't mind a program being RAM hungry, but I would like some fail safes/checks so it doesn't crash the whole computer when it overflows.
December 3, 2024 at 11:15 AM
Oh, didn't know SlicerMorph helped with that. Is that simple Downsampling at the point of loading data?
I don't mind a program being RAM hungry, but I would like some fail safes/checks so it doesn't crash the whole computer when it overflows.
I don't mind a program being RAM hungry, but I would like some fail safes/checks so it doesn't crash the whole computer when it overflows.
Join #Imageomics investigator Murat Maga for an intensive, in-person bootcamp from March 3rd–6th in Seattle!
This hands-on workshop is for those looking to implement #3DSlicer, #SlicerMorph, #MorphoCloud, and #MorphoDepot in classroom settings or research teams.
👉 Register at: lnkd.in/gVDQ5JBm
This hands-on workshop is for those looking to implement #3DSlicer, #SlicerMorph, #MorphoCloud, and #MorphoDepot in classroom settings or research teams.
👉 Register at: lnkd.in/gVDQ5JBm
January 30, 2026 at 10:39 PM
Join #Imageomics investigator Murat Maga for an intensive, in-person bootcamp from March 3rd–6th in Seattle!
This hands-on workshop is for those looking to implement #3DSlicer, #SlicerMorph, #MorphoCloud, and #MorphoDepot in classroom settings or research teams.
👉 Register at: lnkd.in/gVDQ5JBm
This hands-on workshop is for those looking to implement #3DSlicer, #SlicerMorph, #MorphoCloud, and #MorphoDepot in classroom settings or research teams.
👉 Register at: lnkd.in/gVDQ5JBm
Oooh nerdy science skeets. I taught myself with Slicermorph which is a PITA, but the entire pipeline is free and works on both windows and ubuntu, so 🙃
October 3, 2024 at 1:29 PM
Oooh nerdy science skeets. I taught myself with Slicermorph which is a PITA, but the entire pipeline is free and works on both windows and ubuntu, so 🙃
SlicerMorph Photogrammetry: An Open-Source Photogrammetry Workflow for Reconstructing 3D Models https://www.biorxiv.org/content/10.1101/2025.03.07.641939v1
March 13, 2025 at 5:31 AM
SlicerMorph Photogrammetry: An Open-Source Photogrammetry Workflow for Reconstructing 3D Models https://www.biorxiv.org/content/10.1101/2025.03.07.641939v1
Unlock the power of 3D modeling with SlicerMorph photogrammetry - an open-source workflow that combines AI-powered image masking and cutting-edge surface reconstruction, delivering highly...
🧵 Thread below
Full analysis: https://helixbrief.com/article/7b980905-0815-4af9-85de-456fc35909e9
🧵 Thread below
Full analysis: https://helixbrief.com/article/7b980905-0815-4af9-85de-456fc35909e9
August 30, 2025 at 2:13 PM
Unlock the power of 3D modeling with SlicerMorph photogrammetry - an open-source workflow that combines AI-powered image masking and cutting-edge surface reconstruction, delivering highly...
🧵 Thread below
Full analysis: https://helixbrief.com/article/7b980905-0815-4af9-85de-456fc35909e9
🧵 Thread below
Full analysis: https://helixbrief.com/article/7b980905-0815-4af9-85de-456fc35909e9