✍️ New in #eLife: #CellSeg3D introduces #WNet3D, a self-supervised 3D #segmentation method for #microscopy data — no labels needed. Claims to outperform #Cellpose/#StarDist on 4 datasets. Includes #opensource plugin (#Napari) + full 3D annotated #cortex dataset. Will test it later.
@napari.org
@napari.org
New tool CellSeg3D, from the group of blu.ski/@epfl-brainmind professor Mackenzie Mathis @trackingactions.bsky.social enables self-supervised 3D cell segmentation in fluorescent microscopy,👇 labeling time & 👆quantitative analysis -
paper: elifesciences.org/articles/99848
news: tinyurl.com/y2hpmbb9
paper: elifesciences.org/articles/99848
news: tinyurl.com/y2hpmbb9
Self-supervised, label-free 3D cell imaging is here
EPFL researchers introduce CellSeg3D, a self-supervised tool for 3D cell segmentation in fluorescence microscopy, eliminating the need for manual labeling and enhancing accessibility for various biolo...
actu.epfl.ch
July 11, 2025 at 1:58 PM
✍️ New in #eLife: #CellSeg3D introduces #WNet3D, a self-supervised 3D #segmentation method for #microscopy data — no labels needed. Claims to outperform #Cellpose/#StarDist on 4 datasets. Includes #opensource plugin (#Napari) + full 3D annotated #cortex dataset. Will test it later.
@napari.org
@napari.org
Video Demos here: youtube.com/playlist?lis...
All source code: github.com/AdaptiveMoto...
All Figure Notebooks: github.com/C-Achard/cel...
New 3D mesoSPIM GT data: zenodo.org/records/1109...
Pretrained Transformer and WNet3D models auto-downloadable on HuggingFace 🤗
All source code: github.com/AdaptiveMoto...
All Figure Notebooks: github.com/C-Achard/cel...
New 3D mesoSPIM GT data: zenodo.org/records/1109...
Pretrained Transformer and WNet3D models auto-downloadable on HuggingFace 🤗
CellSeg3D Videos! - YouTube
youtube.com
December 23, 2024 at 1:51 PM
Video Demos here: youtube.com/playlist?lis...
All source code: github.com/AdaptiveMoto...
All Figure Notebooks: github.com/C-Achard/cel...
New 3D mesoSPIM GT data: zenodo.org/records/1109...
Pretrained Transformer and WNet3D models auto-downloadable on HuggingFace 🤗
All source code: github.com/AdaptiveMoto...
All Figure Notebooks: github.com/C-Achard/cel...
New 3D mesoSPIM GT data: zenodo.org/records/1109...
Pretrained Transformer and WNet3D models auto-downloadable on HuggingFace 🤗
CellSeg3D: self-supervised 3D cellsegmentation for fluorescence microscopy [updated]
Self-sup. models (WNet3D) for 3D cell seg. in microscopy, validated on diverse data, perf. similar to sup. methods.
Self-sup. models (WNet3D) for 3D cell seg. in microscopy, validated on diverse data, perf. similar to sup. methods.
December 23, 2024 at 1:18 PM
CellSeg3D: self-supervised 3D cellsegmentation for fluorescence microscopy [updated]
Self-sup. models (WNet3D) for 3D cell seg. in microscopy, validated on diverse data, perf. similar to sup. methods.
Self-sup. models (WNet3D) for 3D cell seg. in microscopy, validated on diverse data, perf. similar to sup. methods.