We now have bin-level & cell-level results 🤩

Some work will have to be put into integrating results from different tools 🫣 😬 for downstream analyses 🧐.

#bin2cell (shown below ⬇️)
#FICTURE
#SEraster
#MERINGUE
#Giotto
#Banksy
#HERGAST (currently exploring)
#ENACT (next)

bsky.app/profile/lcol...

Check this journal club presentation by @nick-eagles.bsky.social on:

> #ENACT: End-to-End Analysis of Visium High Definition (HD) Data

Nick also compared #ENACT against #bin2cell

#VisiumHD @10xgenomics.bsky.social #PyStats

📼 youtu.be/0D6l01ArI9M

Bin2cell reconstructs cells from high resolution Visium HD data https://www.biorxiv.org/content/10.1101/2024.06.19.599766v1

#SpatialTranscriptomics

Bin2cell reconstructs cells from high resolution #VisiumHD data

Transforming #VisiumHD 2-μm matrix into Single-Cell Spatial data

StarDist segmentation for nuclei detection

#Bioinformatics 2024
academic.oup.com/bioinformati...

By Nick + Zoom AI summary:

> Bin2cell leverages subcellular 2um-resolution Visium HD data to aggregate expression from bins into individual cells, allowing single-cell, spatially resolved data analysis downstream for Visium HD experiments. It's a python package that includes

🆕 journal club by Nick Eagles:

#Bin2cell reconstructs cells from high resolution #VisiumHD data

by Polański #RBartolom et al from #teichlab #YayonNadav labs

📜 doi.org/10.1093/bioi...
🛝 speakerdeck.com/nickeagles/e...
📽️ youtu.be/ZY9N4spEZ_Q

Bin2cell reconstructs cells from high resolution Visium HD data https://www.biorxiv.org/content/10.1101/2024.06.19.599766v1