#marinegenomics
📢 MIG Seminar: Computational genomics of marine biodiversity and ecosystem function

🗓️ Fri, Sep 18 | ⏰ 12 - 1 pm AEST
📍 Agar Theatre (G003), Biosciences 4 (147)
🎙️ A/Prof. Cheong Xin Chan, University of Queensland
🧍‍♂️In-person only
#MarineGenomics #Biodiversity #Metagenomics #CoralSymbiosis #Ecosystem
MIG Seminar: Associate Professor Cheong Xin Chan, University of Queensland
Title: Computational genomics of marine biodiversity and ecosystem function Abstract Marine ecosystems contain vast biodiversity. Dr Chan a...
events.unimelb.edu.au
September 9, 2026 at 4:50 AM
What if protein language model embeddings could collaborate to reveal what proteins do and which residues determine their function? Applied to thioredoxins, visual opsins, cold-shock proteins from environmental diatoms in #TaraOceans.
In bioRxiv: lnkd.in/eaAFAYJW
#ProteinScience #MarineGenomics
August 6, 2026 at 6:45 AM
Thrilled to have our work featured by the Rutgers Office of Public Outreach and Communication! 🧪🪸 http://tiny.cc/ri3r001 #marinegenomics #coralreefs #conservation
August 12, 2025 at 7:48 PM
Today's #DailyCoralRead by Rassmussen et al. shows us we can’t always trust our eyes 🙈

They revise the Acropora hyacinthus complex, revealing 5 new species once all thought to be A. hyacinthus! 🧪🪸

www.publish.csiro.au...

#coralreefs #marinegenomics
The tables have turned: taxonomy, systematics and biogeography of the Acropora hyacinthus (Scleractinia: Acroporidae) complex
Genomic data have revealed that traditional coral taxonomy based on skeletal morphology does not accurately reflect the true diversity of, or systematic relationships within, the order Scleractinia. Here, we apply an integrated taxonomic approach combining molecular analysis and morphological comparison of type material with specimens collected from across the Indo-Pacific to revise the taxonomy of a clade within the species-rich and ecologically dominant reef coral genus Acropora, which includes the species Acropora hyacinthus (Dana, 1846) and related species (termed the ‘hyacinthus species complex’). Using a collection of specimens comprising preserved tissues, field images and skeletal vouchers collected from 22 regions spanning the Indian and Pacific Oceans, we generated a phylogenomic reconstruction using targeted capture of ultraconserved elements (UCEs) and exons, combined with examination of morphological characters, to generate primary species hypotheses (PSHs) for the clade. We then tested PSHs by calling Single Nucleotide Polymorphism (SNPs) from the genomic dataset to provide additional lines of evidence to support the delineation of species within the clade and revise the taxonomy of the group. Our integrated approach recovered 16 lineages sufficiently delineated to be designated as distinct species. Based on comparison of our specimens to type material and geographical distributions, we remove nine species from synonymy: A. turbinata (Verrrill, 1864), A. surculosa (Dana, 1846), A. patella (Studer, 1878), A. flabelliformis (Milne-Edwards, 1860), A. conferta (Quelch, 1886), A pectinata (Brook, 1892), A. recumbens (Brook, 1892), A. sinensis (Brook, 1893) and A. bifurcata Nemenzo, 1971. We also describe five new species: A. harriottae sp. nov. from south-eastern Australia, A. tersa sp. nov. from eastern Australia and the Western Pacific, A. nyinggulu sp. nov. from the eastern Indian Ocean, Indo-Australian Archipelago and southern Japan, A. uogi sp. nov. from the western Pacific and A. kalindae sp. nov. from north-eastern Australia. Our data reveal that the species richness within this clade of Acropora is far greater than currently assumed due to both overlooked provincialism across the Indo-Pacific as well as lumping of distinct sympatric species based on superficial morphological similarity. Given the key ecological role tabular Acropora play on Indo-Pacific reefs our findings have significant implications for reef conservation and management, for example, A. harriottae sp. nov. is restricted to a small geographical region of south-eastern Australia and is therefore at comparatively high risk of extinction. ZooBank: urn:lsid:zoobank.org:pub:6C42546C-9253-4639-9FF4-D8D80808D78C
www.publish.csiro.au
August 11, 2025 at 4:40 PM
So excited to see this come out! Thank you to Rutgers Office of Public Outreach and Communication for featuring our work 🧪🪸

https://rb.gy/yxkzla

#marinegenomics #coralreefs #conservation
August 8, 2025 at 3:06 PM
Very cool new preprint showing the power of metagenomics for studying disease in non-model systems, applied Stony Coral Tissue Loss Disease in the Caribbean. 🦠🧬🧪

Check it out below!👇

#marinegenomics #coralreefs #sctld
🚨 New preprint alert! 🚨

We've just posted our latest work on Stony Coral Tissue Loss Disease. Using metagenomics, we look at microbial dynamics in infected corals 🧬🌊🪸

📄 Read it here: www.biorxiv.org/content/10.1...

#CoralReefs #Microbiome #Metagenomics #ViralEcology #CoralDisease #preprint
www.biorxiv.org
June 23, 2025 at 4:49 PM
🧪Lateral flow tests, colorimetric dipsticks, colorimetric LAMP, oh my!! 🤩

Read below to find out how we can adapt existing point-of-care tools to aid coral restoration 🪸❤️‍🩹👇
onlinelibrary.wiley.com/doi/10.1002/...

#marinegenomics #conservation #coralreefs
Coral Restoration in the Omics Era: Development of Point‐of‐Care Tools for Monitoring Disease, Reproduction, and Thermal Stress
Shown are different multi-omics approaches that are used to identify potential biomarkers of coral health and disease. The integration of these data streams, using cutting-edge molecular diagnostic t...
onlinelibrary.wiley.com
May 12, 2025 at 4:56 PM
🚨 Excited to share my first ever review article, now out in BioEssays! 🚨

We explore how human point-of-care diagnostic tests can be adapted to monitor coral health! 🧬🌊

Check it out ➡️ doi.org/10.1002/bies...

#CoralReefs #Biotech #Conservation #MarineGenomics
Coral Restoration in the Omics Era: Development of Point‐of‐Care Tools for Monitoring Disease, Reproduction, and Thermal Stress
Shown are different multi-omics approaches that are used to identify potential biomarkers of coral health and disease. The integration of these data streams, using cutting-edge molecular diagnostic t...
doi.org
April 28, 2025 at 7:17 PM
Happy to share our recent article accepted for publication.
Congratulations to co-authors!
#Streptomyces #SouthernOcean #Microbialgenomics #Bacterialgenome #Bioprospecting #Marinegenomics #Marinemicrobiology
January 9, 2026 at 7:10 AM
🌊 In honor of #WorldOceanDay, join us for a special webinar on coral genomics!
🪸 Discover the first reference genomes of 2 deep-reef builders and their role in conservation.
📅 June 10 | 💙 Save your spot:
edenrocsciences.zoom...

#CoralReefs #MarineGenomics #ClimateResilience

June 4, 2025 at 3:46 PM
This study is a breakthrough not only for Galápagos, but for marine conservation across the Eastern Tropical Pacific. Read the full paper here:
📖 www.nature.com/articles/s41...
#CDFScience #MarineGenomics #GalapagosConservation
#SeaCucumber
A chromosome-level genome assembly for the brown sea cucumber from the Galápagos Islands, Isostichopus fuscus - Scientific Data
Scientific Data - A chromosome-level genome assembly for the brown sea cucumber from the Galápagos Islands, Isostichopus fuscus
www.nature.com
February 4, 2026 at 2:42 PM
Humans and sponges share gene regulation mechanisms. https://www.uq.edu.au/news/node/120448 #marinegenomics #epigenetics
November 14, 2024 at 11:30 AM
🧬 Pillar 2 uses state-of-the-art computational tools to map biosynthetic pathways in marine microorganisms — enabling smarter, faster discovery.

#EUREMAP #MarineGenomics #BiotechInnovation
July 24, 2025 at 2:06 PM
The first edition of the #MarineGenomics course is coming to a close 🎉
A huge thank you to this fantastic team of instructors and to everyone who joined us this week!
We hope it has been a great learning experience for everyone
www.physalia-courses.org/courses-work...
May 29, 2026 at 1:21 PM
It’s time to link genomic variation to environmental data in Day 4 of the #MarineGenomics course 🌊🧬

Today’s session is led by our #SeascapeGenomics guru, Oliver Selmoni from University of Zurich, exploring how environmental patterns shape genomic diversity in marine ecosystems.
May 28, 2026 at 3:10 PM
If you work with marine organisms and are interested in learning how to analyse genomic data and carry out population and seascape genomics analyses, you should not miss this course: www.physalia-courses.org/courses-work...

#MarineGenomics
Marine Genomics
25–29 May 2026 To foster international participation, this course will be held online
www.physalia-courses.org
May 11, 2026 at 12:13 PM
🌊 Dive into Marine Genomics from anywhere in the world!

Join our online course, 25–29 May to learn hands-on genome analysis, population genomics & seascape genomics. Limited spots—boost your marine research skills now! 🧬💻
www.physalia-courses.org/courses-work...

#MarineGenomics #Bioinformatics
Marine Genomics
25–29 May 2026 To foster international participation, this course will be held online
www.physalia-courses.org
March 9, 2026 at 4:41 PM
🌊 Interested in Marine Genomics? Join us 25–29 May 2026 for our first course in Crete 🇬🇷!
Hands-on genomics training in a stunning location with an amazing instructor team. @markravinet.bsky.social

www.physalia-courses.org/courses-work...
#MarineGenomics #SeascapeGenomics #Bioinformatics #Genomics
September 24, 2025 at 1:03 PM
Flamingo tongue snails (Cyphoma gibbosum) use specialized detoxification genes to neutralize coral toxins, making gorgonians a safe and exclusive food source. 🪸🐌🧬
📸 credit: me
#MarineGenomics #Adaptation #molluscMonday #octocoralFriday #MarineLife in the Florida Keys
November 22, 2024 at 4:14 PM
🪸🔥 New Preprint Alert! 🔥🪸

Our latest study dives into the proteomic and metabolomic responses of three corals under short-term thermal stress.💥 We uncover species-specific survival strategies!

Take a read at: www.biorxiv.org/content/10.1...
#CoralReefs #Conservation #MarineGenomics #Proteomics
Metaproteome analysis of short-term thermal stress in three sympatric coral species reveals divergent host responses.
The accelerating loss of coral reefs worldwide due to anthropogenic climate change has led to a myriad of studies aimed at understanding the basis of coral resilience to support reef conservation. Her...
www.biorxiv.org
August 9, 2025 at 2:27 PM
🌟 New to #proteomics? We recommend #protti – a user-friendly R package that simplifies proteomics workflows from quality control to differential expression and visualization! 📊🔍

Check it out ➡️ jpquast.github.io/pr...

#ResourceWednesday #Bioinformatics #MarineGenomics
July 23, 2025 at 4:39 PM
🌊 Interested in #metabolomics but unsure where to start? @TidyMass is a user-friendly, all-in-one R package for metabolomics - from data preprocessing to pathway enrichment! 📈🔬

Get started here: www.tidymass.org/docs/

#ResourceWednesday #Marinegenomics #Bioinformatics
July 9, 2025 at 12:08 PM
Session 6.4 Genetic Insights and Tools for Marine Conservation and Management: From DNA to Decisions hosted by Sara Krause 🦑🌏🧪
#ICYMARE2026Bremen #marinegenomics #marineconservation #conservationandmanagement #marinemanagement #earlycareerconference #oceandecade
March 6, 2026 at 2:39 PM