#multicontrast
Congratulations to Stella Dees for defending her thesis on "Multicontrast 3P-microscopy for biological tissue imaging"
April 9, 2025 at 9:28 AM
Now & Forever: Denali. #Lumen / #cyanotype print on #Agfa #multicontrast #photopaper with #raspberry #leaves and cutouts. I think I found my new favorite #expiredpaper ! This one might be a little too #abstract. Thoughts? #altpro #analog #darkroom
April 22, 2025 at 10:48 PM
Check out OPN's interview with Emmanuel Beaurepaire for a sneak peek at what he will discuss during his Optica Biophotonics Congress plenary talk, “Color and Multicontrast Multiphoton Imaging of Brain and Scattering Tissue." https://bit.ly/4vcX1Hg

💡 ⚛️ 🧪 @ecolepolytechnique.bsky.social
April 10, 2026 at 8:41 PM
A miniscope with cloud-based operation and multicontrast capabilities enables continuous recording of neuronal activity, hemodynamics and cellular dynamics over multiple days.

www.nature.com/articles/s41...
A cloud-based miniscope for neurosurveillance of brain health and disease in freely behaving animals - Nature Methods
A miniscope with cloud-based operation and multicontrast capabilities enables continuous recording of neuronal activity, hemodynamics or cellular dynamics over multiple days. This allows monitoring br...
www.nature.com
June 26, 2026 at 2:42 PM
"Deep Learning Radiomics Signature from Multicontrast MRI for Automated Identification of Symptomatic Carotid Plaques: A Multicenter Study"
June 10, 2026 at 3:00 PM
Today at 12 noon CT, Dawn Chen, PhD presents the Monthly Seminar on Physical Genomics: Computational Enhanced Multicontrast Imaging of Organoids and In Vivo Mouse Brain

Live on Zoom, register at tinyurl.com/mr2smffd

#imaging #northwestern #biology #AI #microscopy
June 27, 2025 at 3:54 PM
"The quantitative multicontrast atherosclerosis characterization (qMATCH) enables high-resolution 3D multicontrast evaluation of carotid atherosclerosis. This prospective study compared image quality, motion robustness, and reproducibility between transverse and coronal qMATCH acquisitions."
August 13, 2026 at 3:00 PM
Optimization of Image Quality for Quantitative Multicontrast Atherosclerosis Characterization (qMATCH): Comparison between Transverse and Coronal Acquisitions
SUMMARY: The quantitative multicontrast atherosclerosis characterization (qMATCH) technique enables high-resolution 3D multicontrast evaluation of carotid atherosclerosis, but the optimal acquisition orientation for reproducible image quality remains unclear. This prospective study compared image quality, motion robustness, and reproducibility between transverse and coronal qMATCH acquisitions. Thirty participants with moderate-to-severe carotid stenosis each underwent 2 scans, totaling 60 imaging sessions. Coronal imaging demonstrated significantly fewer motion artifacts compared with transverse imaging (34.7% versus 41.5%; P < .05) and yielded higher image quality scores (2.78 versus 2.72; P < .05) and arterial wall apparent SNR (5.10 versus 4.36; P < .05). In motion-corrupted images, coronal imaging also showed superior image quality (2.75 versus 2.65; P < .05) and arterial wall apparent SNR (4.89 versus 4.03; P < .05). Reproducibility for T1/T2 quantification was better for coronal acquisitions, particularly in motion-affected cases. These findings suggest that coronal qMATCH is more robust for motion-prone patients and better suited for longitudinal carotid imaging studies. aCNR : apparent contrast to noise ratio aSNR : apparent SNR ICC : intraclass correlation coefficient LoA : limits of agreement qMATCH : quantitative multicontrast atherosclerosis characterization RADS : Reporting and Data System
doi.org
August 13, 2026 at 3:00 PM
"Optimization of Image Quality for Quantitative Multicontrast Atherosclerosis Characterization (qMATCH): Comparison between Transverse and Coronal Acquisitions"

doi.org/10.3174/ajnr...

@csmcbiri
August 13, 2026 at 3:00 PM
Xi (Dawn) Chen - Computational Enhanced Multicontrast Imaging of Organoids and In Vivo Mouse Brain
Center for Physical Genomics and Engineering
youtu.be/BqhpxuoQevw?...
Xi (Dawn) Chen - Computational Enhanced Multicontrast Imaging of Organoids and In Vivo Mouse Brain
YouTube video by Center for Physical Genomics and Engineering
youtu.be
June 28, 2025 at 12:18 AM
Prof. Dawn Chen's lecture for the June Seminar on Physical Genomics, "Computational Enhanced Multicontrast Imaging of Organoids and In Vivo Mouse Brain", can now be viewed at CPGE's YouTube channel:

youtu.be/BqhpxuoQevw

#microscopy #biology #AI #northwestern #biophotonics #cpge
Xi (Dawn) Chen - Computational Enhanced Multicontrast Imaging of Organoids and In Vivo Mouse Brain
YouTube video by Center for Physical Genomics and Engineering
youtu.be
July 2, 2025 at 2:15 AM
Tomorrow! June 27 @ 12pm CT, Xi (Dawn) Chen presents the Monthly Seminar on Physical Genomics: Computational Enhanced Multicontrast Imaging of Organoids and In Vivo Mouse Brain

Live on Zoom, register at tinyurl.com/mr2smffd

#imaging #northwestern #biology #AI #microscopy #biophotonics #research
June 26, 2025 at 3:23 PM
This Friday June 27 @ 12pm CT, Xi (Dawn) Chen presents the Monthly Seminar on Physical Genomics: Computational Enhanced Multicontrast Imaging of Organoids and In Vivo Mouse Brain

Live on Zoom, register at tinyurl.com/mr2smffd

#photonics #imaging #cpge #northwestern #biology #AI #microscopy
June 23, 2025 at 5:40 PM
Friday June 27 @ 12pm CT, Xi (Dawn) Chen presents the Monthly Seminar on Physical Genomics: Computational Enhanced Multicontrast Imaging of Organoids and In Vivo Mouse Brain

Live on Zoom, register at tinyurl.com/mr2smffd

#photonics #imaging #cpge #northwestern #biology #research #AI #microscopy
June 17, 2025 at 5:24 PM
Structural MRI Differences Between Parkinson's Disease Motor Subtypes in Early-Stage: A Multicontrast Imaging Study https://www.medrxiv.org/content/10.1101/2024.12.08.24318615v1
December 9, 2024 at 5:28 AM
Its accuracy remained high across varying degrees of stenosis and correlated with higher risk plaque features
Deep Learning Radiomics Signature from Multicontrast MRI for Automated Identification of Symptomatic Carotid Plaques: A Multicenter Study
BACKGROUND AND PURPOSE: Ischemic stroke poses a significant global health burden. Accurately identifying symptomatic carotid atherosclerotic plaques, beyond relying solely on stenosis degree, remains a critical challenge for precise stroke risk stratification. We aimed to develop and validate a deep learning radiomics (DLR) signature based on multicontrast MRI to identify symptomatic carotid plaques accurately. MATERIALS AND METHODS: In this retrospective multicenter study, 409 carotid arteries from 355 patients with carotid atherosclerosis were enrolled (219 training, 95 internal validation, 95 external test). Deep learning (DL) and radiomics features were extracted and combined from automatically segmented plaque regions on multicontrast MRI. The optimized DLR signature derived from a 3-stage feature selection pipeline was leveraged to train diverse machine learning classifiers for robust identification of symptomatic carotid plaques. Model performance was evaluated using the area under the receiver operating characteristic curve (AUROC) and compared against clinical models, radiomics-only models, and DL-only models. Subgroup analysis across stenosis severities and comparison of MRI-based American Heart Association lesion types between DLR-defined risk groups were performed. RESULTS: The DLR model with logistic regression demonstrated excellent performance in identifying symptomatic plaques, achieving AUROCs of 0.975 (95% CI, 0.954–0.992), 0.933 (95% CI, 0.876–0.976), and 0.881 (95% CI, 0.807–0.939) in the training, internal validation, and external validation cohorts, respectively. It significantly outperformed the clinical model (AUROCs of 0.701, 0.749, 0.711; P < .05), radiomics-only model (AUROCs of 0.877, 0.839, 0.789; P < .05), and DL-only model (AUROCs of 0.948, 0.894, 0.845; P < .05 in training/external). Performance remained consistently high across stenosis severity subgroups (AUROCs of 0.895–0.982 for severe, 0.863–0.971 for mild-moderate stenosis). DLR-defined symptomatic groups showed significantly higher prevalence of complex type VI lesions (internal: 50.0% versus 14.8%, P < .001; external: 48.7% versus 20.7%, P = .004) and lower prevalence of predominantly calcified type VII lesions (external: 8.1% versus 43.1%, P < .001) compared with asymptomatic groups. CONCLUSIONS: The developed multicontrast MRI-based DLR signature provides a highly accurate and robust tool for the automated identification of symptomatic carotid plaques, underscoring its potential value as a noninvasive tool to guide personalized stroke prevention strategies. AUROC : area under the receive operating characteristic AHA : American Heart Association DCA : decision curve analysis DL : deep learning DLR : deep learning radiomics Grad-CAM : gradient-weighted class activation mapping HR-MRI : high-resolution MRI IPH : intraplaque hemorrhage IS : ischemic stroke LRNC : lipid-rich necrotic core TOAST : Trial of Org 10172 in Acute Stroke Treatment
www.ajnr.org
May 20, 2026 at 2:00 PM
This multicenter retrospective study developed and validated a deep learning radiomics model using multicontrast MRI to identify symptomatic carotid atherosclerotic plaques.
May 20, 2026 at 2:00 PM
Check our Editor’s choice of the month: ‘’Deep Learning Radiomics Signature from Multicontrast MRI for Automated Identification of Symptomatic Carotid Plaques: A Multicenter Study’’
May 20, 2026 at 2:00 PM
"We found that deep learning models with volumetric MRI data only as inputs can be used to predict amyloid status with an AUC of about 0.7. The use of multicontrast MRI significantly improved the predictions, and this generalized to an external data set."
December 26, 2025 at 4:00 PM
Structural MRI Differences Between Parkinson's Disease Motor Subtypes in Early-Stage: A Multicontrast Imaging Study #NeuroDegeneration 🧪🧠
http://medrxiv.org/cgi/content/short/2024.12.08.24318615v1
December 9, 2024 at 7:38 AM