hquesneville.bsky.social
@hquesneville.bsky.social
Scientist, interested in transposable element, genomes, evolution, bioinformatics, and data.
Reposted by hquesneville.bsky.social
Merci aux organisateurs du STBDE de @upecofficiel.bsky.social de nous avoir convié à cet événement festif et convivial !
@johannconfais.bsky.social de @urgi-inrae.bsky.social et @hquesneville.bsky.social de @inrae-dipso.bsky.social ont représenté le stand @inrae-france.bsky.social lors de la nuit des chercheurs.euses @upecofficiel.bsky.social sciences-tech.u-pec.fr/la-faculte/a...
February 12, 2026 at 7:00 PM
Merci aux organisateurs du STBDE de @upecofficiel.bsky.social de nous avoir convié à cet événement festif et convivial !
Reposted by hquesneville.bsky.social
✨ Take-home message:
panREPET provides a robust and scalable framework to study TE evolutionary dynamics at the species level—without a reference genome.
panREPET provides a robust and scalable framework to study TE evolutionary dynamics at the species level—without a reference genome.
February 16, 2026 at 8:38 AM
✨ Take-home message:
panREPET provides a robust and scalable framework to study TE evolutionary dynamics at the species level—without a reference genome.
panREPET provides a robust and scalable framework to study TE evolutionary dynamics at the species level—without a reference genome.
Reposted by hquesneville.bsky.social
⏳ By combining pangenomics with SNP-based genetic distances, we date major waves of TE activity:
❄️ ~22 kya (Last Glacial Maximum)
🌍 ~10 kya (Holocene)
👉 suggesting a link between climatic stress and TE mobilization
❄️ ~22 kya (Last Glacial Maximum)
🌍 ~10 kya (Holocene)
👉 suggesting a link between climatic stress and TE mobilization
February 16, 2026 at 8:38 AM
⏳ By combining pangenomics with SNP-based genetic distances, we date major waves of TE activity:
❄️ ~22 kya (Last Glacial Maximum)
🌍 ~10 kya (Holocene)
👉 suggesting a link between climatic stress and TE mobilization
❄️ ~22 kya (Last Glacial Maximum)
🌍 ~10 kya (Holocene)
👉 suggesting a link between climatic stress and TE mobilization
Reposted by hquesneville.bsky.social
🚨📢📄 Article in press in Genome Biology doi.org/10.1186/s130...
We introduce panREPET, a reference-free pipeline to detect shared transposable element (TE) insertions across pangenomes and retrace their evolutionary dynamics #TEsky 🧵👇
We introduce panREPET, a reference-free pipeline to detect shared transposable element (TE) insertions across pangenomes and retrace their evolutionary dynamics #TEsky 🧵👇
A reference-free pipeline for detecting shared transposable elements from pan-genomes to retrace their dynamics in a species - Genome Biology
Background The role of transposable elements (TEs) in host adaptation has gained interest in recent years. Individuals of the same species undergo independent TE insertions, providing genetic variabil...
doi.org
February 16, 2026 at 8:38 AM
🚨📢📄 Article in press in Genome Biology doi.org/10.1186/s130...
We introduce panREPET, a reference-free pipeline to detect shared transposable element (TE) insertions across pangenomes and retrace their evolutionary dynamics #TEsky 🧵👇
We introduce panREPET, a reference-free pipeline to detect shared transposable element (TE) insertions across pangenomes and retrace their evolutionary dynamics #TEsky 🧵👇
Reposted by hquesneville.bsky.social
@johannconfais.bsky.social de @urgi-inrae.bsky.social et @hquesneville.bsky.social de @inrae-dipso.bsky.social ont représenté le stand @inrae-france.bsky.social lors de la nuit des chercheurs.euses @upecofficiel.bsky.social sciences-tech.u-pec.fr/la-faculte/a...
February 12, 2026 at 6:45 PM
@johannconfais.bsky.social de @urgi-inrae.bsky.social et @hquesneville.bsky.social de @inrae-dipso.bsky.social ont représenté le stand @inrae-france.bsky.social lors de la nuit des chercheurs.euses @upecofficiel.bsky.social sciences-tech.u-pec.fr/la-faculte/a...
Je viens de faire mon #eXit! L’exode de X est massif. Ne perdez pas un seul de vos abonnés. Grâce à #HelloQuitX j’ai inscrit 1052 nouveaux passagers pour partir vers #BlueSky & #Mastodon. Retrouvez automatiquement vos communautés le #20Janvier via app.helloquitx.com !
HelloQuitteX
Libérez vos espaces numériques
app.helloquitx.com
January 24, 2025 at 8:15 AM
Je viens de faire mon #eXit! L’exode de X est massif. Ne perdez pas un seul de vos abonnés. Grâce à #HelloQuitX j’ai inscrit 1052 nouveaux passagers pour partir vers #BlueSky & #Mastodon. Retrouvez automatiquement vos communautés le #20Janvier via app.helloquitx.com !
Je viens de faire mon #eXit! L’exode de X est massif. Ne perdez pas un seul de vos abonnés. Grâce à #HelloQuitX j’ai inscrit 1052 nouveaux passagers pour partir vers #BlueSky & #Mastodon. Retrouvez automatiquement vos communautés le #20Janvier via app.helloquitx.com !
HelloQuitteX
Libérez vos espaces numériques
app.helloquitx.com
January 24, 2025 at 8:11 AM
Je viens de faire mon #eXit! L’exode de X est massif. Ne perdez pas un seul de vos abonnés. Grâce à #HelloQuitX j’ai inscrit 1052 nouveaux passagers pour partir vers #BlueSky & #Mastodon. Retrouvez automatiquement vos communautés le #20Janvier via app.helloquitx.com !
Reposted by hquesneville.bsky.social
We are happy to announce that the recording of the last
#TEhub
workshop on #benchmark at
#ICTE2024
is available on our YouTube channel! youtube.com/watch?v=3qY0... Please share widely! #Transposons #TEsky
#TEhub
workshop on #benchmark at
#ICTE2024
is available on our YouTube channel! youtube.com/watch?v=3qY0... Please share widely! #Transposons #TEsky
Workshop: "developing benchmarks for TE research/bioinformatics" | ICTE24 | Saint-Malo, France
Complete video and audio recording (lightly edited for time) of the 2024 TE-Hub Workshop "TE Hub workshop: developing benchmarks for TE research/methods/tool...
youtube.com
May 10, 2024 at 9:16 AM
We are happy to announce that the recording of the last
#TEhub
workshop on #benchmark at
#ICTE2024
is available on our YouTube channel! youtube.com/watch?v=3qY0... Please share widely! #Transposons #TEsky
#TEhub
workshop on #benchmark at
#ICTE2024
is available on our YouTube channel! youtube.com/watch?v=3qY0... Please share widely! #Transposons #TEsky
Reposted by hquesneville.bsky.social
📣 #hiringalert #JobOpening Rejoignez-nous en tant qu'ingénieur en données agronomiques @INRAE_URGI
en CDD sur Versailles ou Toulouse. Info : jobs.inrae.fr/ot-22883 @INRAE_DPT_BAP
@INRAE_France
@INRAE_IDF
@INRAE_Tlse
@Bioinf0mics
@IFB_Bioinfo
@UnivParisSaclay
@SfbiFr
en CDD sur Versailles ou Toulouse. Info : jobs.inrae.fr/ot-22883 @INRAE_DPT_BAP
@INRAE_France
@INRAE_IDF
@INRAE_Tlse
@Bioinf0mics
@IFB_Bioinfo
@UnivParisSaclay
@SfbiFr
Ingénieur-e données agronomiques
L’URGI, unité INRAE de recherche en bioinformatique dédiée à la génomique et à la génétique des plantes, recherche un ingénieur en données agronomiques, en contrat CDD pour 12 mois renouvelable. La pe...
jobs.inrae.fr
September 30, 2024 at 2:31 PM
📣 #hiringalert #JobOpening Rejoignez-nous en tant qu'ingénieur en données agronomiques @INRAE_URGI
en CDD sur Versailles ou Toulouse. Info : jobs.inrae.fr/ot-22883 @INRAE_DPT_BAP
@INRAE_France
@INRAE_IDF
@INRAE_Tlse
@Bioinf0mics
@IFB_Bioinfo
@UnivParisSaclay
@SfbiFr
en CDD sur Versailles ou Toulouse. Info : jobs.inrae.fr/ot-22883 @INRAE_DPT_BAP
@INRAE_France
@INRAE_IDF
@INRAE_Tlse
@Bioinf0mics
@IFB_Bioinfo
@UnivParisSaclay
@SfbiFr
Reposted by hquesneville.bsky.social
URGI will be present at PAG 2025. We will talked about pangenomics, annotation tools, Data exchange and findability using BrAPI, Data management services, Forest tree data management, check the details here urgi.versailles.inrae.fr/About-us/New...
PAG 32 - URGI
Content Management System
urgi.versailles.inrae.fr
January 6, 2025 at 1:52 PM
URGI will be present at PAG 2025. We will talked about pangenomics, annotation tools, Data exchange and findability using BrAPI, Data management services, Forest tree data management, check the details here urgi.versailles.inrae.fr/About-us/New...
Reposted by hquesneville.bsky.social
Maud Marty will be present at #PAG2025 to introduce forest tree data in FAIDARE, a plant data discovery portal. You want to discover the forest tree data generated by the french community, let her guide you through the ecosystem
January 13, 2025 at 12:58 AM
Maud Marty will be present at #PAG2025 to introduce forest tree data in FAIDARE, a plant data discovery portal. You want to discover the forest tree data generated by the french community, let her guide you through the ecosystem
Reposted by hquesneville.bsky.social
Vanita Haurheeram will be present at #PAG2025 to introduce URGI service to FAIR research data management. Template, guidelines, repositories, data portals tool, come see her at
POSTER80
POSTER80
January 13, 2025 at 12:45 AM
Vanita Haurheeram will be present at #PAG2025 to introduce URGI service to FAIR research data management. Template, guidelines, repositories, data portals tool, come see her at
POSTER80
POSTER80
Reposted by hquesneville.bsky.social
Great tall from @clementgoubert.bsky.social to present GraffiTE: a pipline that finds polymorphic TE in genomes
#PAG32
github.com/cgroza/Graff...
#PAG32
github.com/cgroza/Graff...
January 13, 2025 at 2:14 AM
Great tall from @clementgoubert.bsky.social to present GraffiTE: a pipline that finds polymorphic TE in genomes
#PAG32
github.com/cgroza/Graff...
#PAG32
github.com/cgroza/Graff...
Reposted by hquesneville.bsky.social
After @tehub.bsky.social satellite workshop at #ICTE2024 and the creation of a working group on benchmark, what about the next step ? A manual curation workshop ? Share your thougth with the TEhub
January 12, 2025 at 11:34 PM
After @tehub.bsky.social satellite workshop at #ICTE2024 and the creation of a working group on benchmark, what about the next step ? A manual curation workshop ? Share your thougth with the TEhub
Reposted by hquesneville.bsky.social
REPET got a complete overhaul in version 4.0 ! Etienne Bardet from @urgi-inrae.bsky.social presents the updates in #PAG32
forgemia.inra.fr/urgi-anagen/...
forgemia.inra.fr/urgi-anagen/...
January 13, 2025 at 8:59 PM
REPET got a complete overhaul in version 4.0 ! Etienne Bardet from @urgi-inrae.bsky.social presents the updates in #PAG32
forgemia.inra.fr/urgi-anagen/...
forgemia.inra.fr/urgi-anagen/...
Reposted by hquesneville.bsky.social
@johannconfais.bsky.social and @clementgoubert.bsky.social are presenting @tehub.bsky.social at #PAG2025, an amazing resource and driven community for anyone interested in transposable element
January 12, 2025 at 11:28 PM
@johannconfais.bsky.social and @clementgoubert.bsky.social are presenting @tehub.bsky.social at #PAG2025, an amazing resource and driven community for anyone interested in transposable element
Reposted by hquesneville.bsky.social
Amazing talk of @nico971.bsky.social from @urgi-inrae.bsky.social on RepetDB #PAG32
urgi.versailles.inra.fr/repetdb/begi...
urgi.versailles.inra.fr/repetdb/begi...
January 11, 2025 at 9:45 PM
Amazing talk of @nico971.bsky.social from @urgi-inrae.bsky.social on RepetDB #PAG32
urgi.versailles.inra.fr/repetdb/begi...
urgi.versailles.inra.fr/repetdb/begi...
Reposted by hquesneville.bsky.social
#ICTE2024 is starting #TEworldwide, INRAE-URGI is here with @johannconfais.bsky.social Somia Saidi, Héléna Vassilieff and Etienne Bardet, come see our posters and discuss
April 20, 2024 at 5:43 PM
#ICTE2024 is starting #TEworldwide, INRAE-URGI is here with @johannconfais.bsky.social Somia Saidi, Héléna Vassilieff and Etienne Bardet, come see our posters and discuss
Reposted by hquesneville.bsky.social
#TEhub workshop on #benchmark starts with a full room listening to the wisdom of @hquesneville and Arian Smit on the considerations, pitfalls and ways to assess #Transposons annotation. Soon on our YouTube channel! #TEsky
April 24, 2024 at 8:40 AM
#TEhub workshop on #benchmark starts with a full room listening to the wisdom of @hquesneville and Arian Smit on the considerations, pitfalls and ways to assess #Transposons annotation. Soon on our YouTube channel! #TEsky
Reposted by hquesneville.bsky.social
Only one more week to register and submit an abstract to #ICTE2024 (February 15th). There will be no extensions! The abstract submission process can be so 😱 please take your time to go through all the cases to fill. There are 22 slots for speakers. Be on time, and come showcase your research!
February 7, 2024 at 9:54 AM
Only one more week to register and submit an abstract to #ICTE2024 (February 15th). There will be no extensions! The abstract submission process can be so 😱 please take your time to go through all the cases to fill. There are 22 slots for speakers. Be on time, and come showcase your research!