Yu-tao Cao
yu-tao.bsky.social
Yu-tao Cao
@yu-tao.bsky.social
PhD student @ MPI Biology Tübingen & Friedrich Miescher Laboratory

interesting in environment - sensing noise regulators (Global modifiers).
Reposted by Yu-tao Cao
Very excited to share the first preprint from my PhD with the community! This is also the first paper from the Plant Immunogenomics group with @galofir.bsky.social, so stay tuned for more!
www.biorxiv.org/content/10.6...
1/n 🧵
NO VEIN is an ancestral immunity protein involved in plant-virus interaction
The conservation of immune systems from prokaryotes to eukaryotes can guide discovery of immunity genes across the tree of life. Most studies to date have focused on metazoan systems, while the extent...
www.biorxiv.org
October 1, 2026 at 1:40 PM
Reposted by Yu-tao Cao
Happy birthday to Friedrich Miescher!

In 1869, Miescher became the first scientist to isolate what he called “nuclein” from the nuclei of white blood cells—the substance we now know as #DNA.

Read more in #GENETICS: buff.ly/0wReMtD
August 13, 2026 at 1:02 PM
Reposted by Yu-tao Cao
What drives the variation in mutation rates between seals and walruses, gulls and pelicans? Maybe selection counteracting the burden of deleterious mutations- or maybe it is a spandrel, a neutral byproduct of the diversification of development and life-history academic.oup.com/evolut/advan...
Mutation rate variation as the neutral byproduct of developmental and life history diversification
Abstract. Understanding why species differ in their rates of mutation is central to explaining patterns of molecular and phenotypic evolution. Mutation rat
academic.oup.com
July 9, 2026 at 6:47 PM
Reposted by Yu-tao Cao
TL;DR: We've identified more than 100 cases of apparent manipulation in Thermo Fisher Scientific's antibody verification data.

@sholtodavid.bsky.social @johanduchene.bsky.social

reeserichardson.blog/2026/05/28/h...
How much of Thermo Fisher’s antibody data has been manipulated?
We’ve documented more than 100 instances of apparent data manipulation in Thermo’s catalog
reeserichardson.blog
May 28, 2026 at 5:48 PM
Reposted by Yu-tao Cao
Well done to everyone involved in this week's systems biology course; we cannot wait to see what you do with your new skills and the community you've created.

Looking for your own systems bioinformatics training? Why not start with our free on-demand related training: www.ebi.ac.uk/training/on-...
May 15, 2026 at 10:14 AM
Reposted by Yu-tao Cao
Heya science peeps, my first first-author paper is on Biorxiv! We show how transcriptome-wide expression variability in outbred animals responds massively to an environmental stressor and is underpinned by cryptic variability- (not just mean-) controlling alleles. www.biorxiv.org/content/10.6...
February 20, 2026 at 1:05 PM
Reposted by Yu-tao Cao
1/ DNA sequence models like Borzoi predict gene expression and variant effects across tissues — but how can someone adapt the model to a custom experiment? @drkbio.bsky.social, Johannes Linder and I propose a solution via parameter-efficient fine-tuning (PEFT).
www.biorxiv.org/content/10.1...
Parameter-Efficient Fine-Tuning of a Supervised Regulatory Sequence Model
DNA sequence deep learning models accurately predict epigenetic and transcriptional profiles, enabling analysis of gene regulation and genetic variant effects. While large-scale training models like E...
www.biorxiv.org
June 2, 2025 at 8:09 PM
Reposted by Yu-tao Cao
PhD position available for theoretical and statistical modeling in my joint @gevol.bsky.social project with @luisapallares.bsky.social on the evolution of transcriptional variability and its role in adaptation and evolutionary innovation.
See
job-portal.lmu.de/jobposting/6...
PhD candidate in biology — theoretical and statistical modeling (m/f/x)
job-portal.lmu.de
November 26, 2025 at 2:37 PM
Reposted by Yu-tao Cao
All info on this SBME satellite meeting on 'Origin, Maintenance, and Evolution of Biological Noise' is here: pallareslab.github.io/bionoise2025.... The recorded talks will be available soon! #BioNoise
SMBE Satellite Meeting Biological Noise
SMBE Satellite Meeting Biological Noise
pallareslab.github.io
June 12, 2025 at 12:42 PM
Reposted by Yu-tao Cao
Our SMBE Satellite Meeting on Biological Noise is only couple of days away! We will be streaming the talks on Zoom, in case you couldn't join us in person - Info about the zoom link and the program is here: pallareslab.github.io/bionoise2025...
May 30, 2025 at 3:02 PM
Reposted by Yu-tao Cao
🪰 🧬 Do you want to enhance your knowledge of Drosophila as a model organism? Then 'Drosophila genetics and genomics' might be the right course for you!

Apply now and join us in Heidelberg for lectures and practical sessions delivered by renowned experts 👉 s.embl.org/drg25-01-bl

#EMBODrosophila
January 16, 2025 at 2:19 PM
Reposted by Yu-tao Cao
Join us for our next Kipoi Seminar with with Pedro Tomaz da Silva @pedrotomazdasilva.bsky.social @gagneurlab.bsky.social @TU_Muenchen!
👉Nucleotide dependency analysis of DNA language models reveals genomic functional elements
📅Wed Feb 5, 5:30pm CET
🧬https://kipoi.org/seminar/
🦋kipoizoo.bsky
February 3, 2025 at 4:11 PM
Reposted by Yu-tao Cao
Deep learning with data beyond the genome: Our paper on active machine learning to model regulatory DNA is out today in Cell Systems.

With functional assays and DNA synthesis you can generate any training examples, not just genomic sequences. 🧵
kwnsfk27.r.eu-west-1.awstrack.me/L0/https:%2F...
January 7, 2025 at 5:42 PM