##DeepLearning
‼️🔬 We start!!! 🎉🤖
Super exciting!!! After years of teaching courses for #DeepLearning for Microscopy and Life Science application, we start today our first “advanced course” @embl.org!
#EMBLDeepLearning
February 17, 2025 at 8:37 AM
Protein function depends on dynamic conformational changes. Patrick Barth &co present AlloPool, a #DeepLearning framework that reveals how protein motions give rise to biological function across diverse systems. 🧪 #ProteinStructure buff.ly/sTHTDBQ
September 25, 2026 at 4:30 PM
Finally out! We present EXTRA-seq, a new EXTended Reporter Assay to quantify endogenous enhancer-promoter communication at kb scale!
www.biorxiv.org/content/10.1...
A 🧵about what it can do:
#SynBio #DeepLearning #GeneRegulation
EXTRA-seq: a genome-integrated extended massively parallel reporter assay to quantify enhancer-promoter communication
Precise control of gene expression is essential for cellular function, but the mechanisms by which enhancers communicate with promoters to coordinate this process are not fully understood. While seque...
biorxiv.org
December 16, 2024 at 2:39 PM
If you use generative #DeepLearning for molecule design, check out our latest work, where we perform a large scale analysis (~1 B designs!) and find ‘traps’, ‘treasures’ and ‘ways out’ in the jungle of generative drug discovery.
🌴 🐒

Paper: arxiv.org/abs/2501.05457
Code: github.com/molML/jungle...
The Jungle of Generative Drug Discovery: Traps, Treasures, and Ways Out
"How to evaluate de novo designs proposed by a generative model?" Despite the transformative potential of generative deep learning in drug discovery, this seemingly simple question has no clear answer...
arxiv.org
January 14, 2025 at 8:29 PM
In Science, researchers report a physics-informed #DeepLearning model that can predict the deformation behavior of Antarctic ice shelves, revealing complexities of the process that extend beyond the traditional understanding.

Learn more in a new #SciencePerspective. scim.ag/3RgudLc
How does Antarctic ice deform?
A deep-learning model infers large-scale dynamics of Antarctic ice shelves
scim.ag
March 17, 2025 at 7:35 PM
Google AI has just released the Population Dynamics Foundation Model (PDFM), designed to enhance geospatial analysis! 🌍
🔍 Learn more:
📖 Blog Post: t.co/ZhApcQME52
📝 Research Paper: arxiv.org/abs/2411.07207
💻 GitHub Repository: github.com/google-resea...
#geospatial #deeplearning
November 17, 2024 at 3:30 AM
🚀🔬 Can cell shape, signal and movement tell us about a cell's future? #DeepLearning studies now predict cell fate from #microscopy. Together w Rita, @mariodelr.bsky.social, @inesmcunha.bsky.social, @juliettegriffie.bsky.social + @guijacquemet.bsky.social👇

www.preprints.org/manuscript/202607.1414/v1
July 21, 2026 at 1:52 PM
Proper intro!

I'm Dr. Ilenna Jones, postdoctoral Research Fellow at the Harvard Kempner Institute for the Study of Natural and Artificial Intelligence. I ask how #NeuralComputation is enabled by #Dendrite properties using supervised learning tools and methods from #ML and #DeepLearning!

🧠🌻🌳
November 10, 2024 at 9:05 PM
Researchers have developed a #DeepLearning system called BioEmu that rapidly generates diverse protein conformations, enabling fast, accurate insights into protein flexibility and function.

Learn more this week in Science: https://scim.ag/3JdQVD4
August 14, 2025 at 6:05 PM
🦠🔬🤖🧑‍💻 #mAIcrobe is out! With @pinholab.bsky.social's lab, we launched an open-source framework for high-throughput bacterial image analysis. By rockstars A. Brito & B. Saraiva et al, making #DeepLearning for phenotyping accessible! Easy to use, plus model training

📜 www.biorxiv.org/content/10.1...
October 22, 2025 at 11:10 AM
Protein function depends on dynamic conformational changes. Patrick Barth &co present AlloPool, a #DeepLearning framework that reveals how protein motions give rise to biological function across diverse systems. 🧪 #ProteinStructure buff.ly/sTHTDBQ
September 24, 2026 at 8:01 AM
Looking for a simple way to do #deeplearning in #Rstats? Check out cito, available on #CRAN via cran.r-project.org/web/packages... and presented in this recent Ecography paper nsojournals.onlinelibrary.wiley.com/doi/full/10....

Cito is an interface to torch for R and supports building and training
December 6, 2024 at 7:50 AM
Happy New Year! 🎉

Are you considering learning a new data science skills as part of your New Year’s resolution? Here is a collection of free courses covering a variety of topics, including #Python, #RStats, #statistics, #math, #machinelearning, #deeplearning, etc.

www.linkedin.com/pulse/curate...
A Curated List of Data Science Free Courses
Happy New Year! 🎉 Are you considering learning a new data science or engineering skill as part of your New Year’s resolution? Here is a collection of free courses and resources covering a variety of t...
www.linkedin.com
January 1, 2025 at 2:28 PM
Teaching my #DeepLearning in #ComputerVision course next semester. Looking for blind spots in my content. Share your favourite deep learning course in the thread.

Course: www.eecs.yorku.ca/~kosta/Cours...
December 23, 2024 at 12:33 AM
Protein function depends on dynamic conformational changes. Patrick Barth &co present AlloPool, a #DeepLearning framework that reveals how protein motions give rise to biological function across diverse systems. 🧪 #ProteinStructure buff.ly/sTHTDBQ
September 22, 2026 at 1:05 PM
Fear, fire, foes:

I realize most of my A.I. technical warnings don't get any interaction in here, but I am compelled to act.

My real interest is human art, gamedev and indiedev!

#llm #infosec #DeepLearning #LargeLanguageModel #MachineLearning #BioBots #XenoBots #Polymorphic #software #monsters
September 25, 2026 at 3:19 PM
♥️ “Understanding #DeepLearning" book by Simon Prince (udlbook.com)
November 20, 2024 at 5:15 PM
Our new paper and software tool PointsToWood is out! Led by Harry Owen and Targeted at high performance for small branches, PointsToWood performs #deeplearning enabled leaf-wood semantic segmentation of high resolution #TLS point clouds. 🌿 🌲 🌳

👇performance on unseen tropical data
March 7, 2025 at 12:39 PM
We've all been there 🤓

#DeepLearning
November 24, 2024 at 1:36 AM
PyTorch 101 🚀

A full PyTorch course (25 hours) for beginners covers the foundation of PyTorch, from processing tensor data to neural network applications such as classification, computer vision, and more.

📽️ www.youtube.com/watch?v=LyJt...

#python #datascience #MachineLearning #DeepLearning
PyTorch 101 Crash Course For Beginners in 2025 (+ Special Giveaway!)
YouTube video by Zero To Mastery
www.youtube.com
December 14, 2024 at 2:36 PM