#BatchEffect
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haoyin.bsky.social
Quantifying #BatchEffect for individual genes in single-cell omics data

Removing top highly batch-sensitive genes for #BatchEffectCorrection🧐

#NatComputSci 2025
www.nature.com/articles/s43...

Preprint
www.researchsquare.com/article/rs-4...
July 2, 2025 at 7:01 PM
haoyin.bsky.social
Lamian

Correct #BatchEffect for Differential Pseudotime analysis in multiple scRNAseq samples

Detect changes in trajectory topology, cell density & gene expression

😎Covariate X Differential expression, in addition to pseudotime DE

#NatureComms 2023
www.nature.com/articles/s41...
January 17, 2024 at 1:42 PM
codon.tr
Toplu RNA-seq Verilerinde Parti Etkisi (Batch Effect): Düzeltmeli miyiz, Düzeltmemeli miyiz?

#PartiEtkisi #BatchEffect #RnaSeq #Limma #Deseq2 #DiferansiyelEkspresyon

https://www.codon.tr/toplu-rna-seq-verilerinde-parti-etkisi-batch-effect-duzeltmeli-miyiz-duzeltmemeli-miyiz/
Toplu RNA-seq Verilerinde Parti Etkisi (Batch Effect): Düzeltmeli miyiz, Düzeltmemeli miyiz?
Codon
www.codon.tr
August 10, 2026 at 8:21 AM
haoyin.bsky.social
Correcting #BatchEffect for #SpatialTranscriptomics
#PRECAST

Integrating spatial data #Visium, ST, #SlideseqV2 from different slides/subjects
Housekeeping gene-based

vs #Harmony #SeuratV3
1⃣Data integration
2⃣Aligned embeddings
3⃣Spatial clustering

#NatureComms 2023
www.nature.com/articles/s41...
January 8, 2024 at 1:12 PM
mig-unimelb.bsky.social
📢 MIG Workshop: Managing batch effects in biological studies

🔬 Learn how to detect and manage batch effects.
🗓️ Thur, June 5 | ⏰ 9:30am - 12:30pm AEST
📍 Lvl 5 Seminar Room, Kenneth Myer Building (#144)
👩‍🏫 Dr. Eva Wang
🎟️ $25, fully refunded

#Bioinformatics #BatchEffect #Omics #Rstats #UniMelb
MIG Workshop: Managing batch effects in biological studies
Lead instructors: Eva Wang Batch effects refer to sources of unwanted variation that are not related to and obscure any factors of interest. Ha...
events.unimelb.edu.au
June 1, 2025 at 1:18 PM