#CoCultures
New yeast toolbox enables precise cell-cell adhesion in synthetic communities, improving bioproduction by targeting 7 genes in strain 007Δ! PMID:41491832, Nat Chem Biol 2026, @nchembio https://doi.org/10.1038/s41589-025-02081-1 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
Programmable cell–cell adhesion in synthetic yeast communities for improved bioproduction | Nature Chemical Biology
In multicellular systems, engineering-controlled cell–cell adhesion and metabolic interdependence are vital for developing complex functionalities. This study introduces a yeast synthetic toolbox for modular cell–cell adhesion and cocultures, aiming to overcome the limitations of existing approaches that lack genetic specificity and control. First, a model yeast strain 007Δ is created with seven main flocculation and agglutination genes removed, providing a clean background for synthetic adhesion systems. Then, three distinct adhesion pair systems—Strategy 1, Strategy 2.1 and Strategy 2.2—are established involving yeast flocculation and agglutination proteins and yeast surface display systems. In addition, a quantitative assessment is conducted on the adhesive specificity and strength, alongside the capability of synthetic adhesion to generate patterns. Finally, we successfully demonstrate enhanced bioproduction of the high-value food antioxidant, resveratrol, utilizing synthetic cocul
doi.org
September 18, 2026 at 4:00 PM
I think this principle extends well beyond soils. Metabolic dependencies may explain why environmental microbes resist cultivation in isolation. Understanding what they cannot make, and who provides it, is a powerful route toward more rational cultivation strategies.
www.nature.com/articles/s41...
Metabolic dependencies are common among soil bacteria - Nature Microbiology
We investigated the prevalence of metabolic dependencies in soil microbial communities. Up to 50% of isolated bacteria could not produce all amino acids required for growth but grew in cocultures with...
www.nature.com
September 9, 2026 at 7:47 PM
Post-Assay Photogelation Enables Flow-Cytometric Sorting and Recovery of Bacterial Cocultures from Microfluidic Droplets www.biorxiv.org/content/10.6... #jcampubs
August 28, 2026 at 7:59 PM
Post-Assay Photogelation Enables Flow-Cytometric Sorting and Recovery of Bacterial Cocultures from Microfluidic Droplets https://www.biorxiv.org/content/10.64898/2026.08.27.747404v1
August 28, 2026 at 5:19 AM
Post-Assay Photogelation Enables Flow-Cytometric Sorting and Recovery of Bacterial Cocultures from Microfluidic Droplets https://www.biorxiv.org/content/10.64898/2026.08.27.747404v1
August 28, 2026 at 5:19 AM
Coral reefs host diverse marine life but face decline from climate change and disease. Beneficial bacteria may combat pathogens like Vibrio spp. #MicroSky pubs.acs.org/doi/10.1021/...
Discovery of Peptidic Siderophore Degradation by Screening Natural Product Profiles in Marine-Derived Bacterial Mono- and Cocultures
Coral reefs are hotspots of marine biodiversity, which results in the synthesis of a wide variety of compounds with unique molecular scaffolds, and bioactivities, rendering reefs an ecosystem of interest. The chemodiversity stems from the intricate relationships between inhabitants of the reef, as the chemistry produced partakes in intra- and interspecies communication, settlement, nutrient acquisition, and defense. However, the coral reefs are declining at an unprecedented rate due to climate change, pollution, and increased incidence of pathogenic diseases. Among pathogens, Vibrio spp. bacteria are key players resulting in high mortality. Thus, alternative strategies such as application of beneficial bacteria isolated from disease-resilient species are being explored to lower the burden of pathogenic species. Here, we apply coculturing of a coral-derived pathogenic species of Vibrio and beneficial bacteria and leverage recent advancements in untargeted metabolomics to discover engineerable beneficial traits. By chasing chemical change in coculture, we report Microbulbifer spp.-mediated degradation of amphibactins, produced by Vibrio spp. bacteria to sequester iron. Additional biochemical experiments revealed that the degradation occurs in the peptide backbone and requires the enzyme fraction of Microbulbifer. A reduction in iron affinity is expected due to the loss of one Fe(III) binding moiety. Therefore, we hypothesize that this degradation shapes community behaviors as it pertains to iron acquisition, a limiting nutrient in the marine environment, and survival. Furthermore, Vibrio sp. bacteria suppressed natural product synthesis by beneficial bacteria. Understanding biochemical mechanisms behind these interactions will enable engineering probiotic bacteria capable of lowering pathogenic burdens during heat waves and incidence of disease.
pubs.acs.org
February 10, 2025 at 2:41 PM
Ng: Unpublished work, but love that my students are here for this talk. Impressive work from a 2nd year grad student! Already texted a student that we should use one of their techniques in our cocultures. #ASMicrobe
June 23, 2025 at 5:07 PM
Online now: ABO: A 3D stroma-supported culture platform enabling full human B-lymphopoiesis for disease modeling and gene therapy development
ABO: A 3D stroma-supported culture platform enabling full human B-lymphopoiesis for disease modeling and gene therapy development
Braams et al. establish 3D aggregate cocultures (ABOs) generating functional B cells from hematopoietic stem and progenitor cells (HSPCs). ABOs recapitulate the B cell developmental arrest of RAG1-deficient HSPCs, which is rescued by RAG1 gene correction, and thus provide a valuable tool to study B cell immunodeficiencies and test gene therapy strategies.
dlvr.it
June 24, 2026 at 12:27 PM
My image made it onto the cover!! 🔬 #neuroskyence #academicsky #phdsky
October 3, 2023 at 4:40 PM
Check out our new paper on mouse myelinating Schwann cell dorsal root ganglion neuron cocultures! #neuroskyence #PhDSky #AcademicSky (one day I shall remember these hashtags in the first place but apparently today is not that day😅)
September 26, 2023 at 11:22 AM
We also show that Schwann cells are axo-protective after injury in these cocultures, regardless of whether they are myelinating or not.
September 26, 2023 at 11:15 AM
Really excited to share our new paper!! We describe a detailed protocol for setting up dissociated mouse myelinating Schwann cell dorsal root ganglion neuron cocultures in microfluidic chambers, and use this model to investigate axon degeneration. journals.biologists.com/jcs/article/...
Schwann cells are axo-protective after injury irrespective of myelination status in mouse Schwann ce...
Highlighted Article: A novel method for compartmentalised mouse myelinating Schwann cell–DRG neuron cocultures, showing that Schwann cell myelination status does not influence their axon protective ...
journals.biologists.com
September 26, 2023 at 11:13 AM
Here is a new article about #MicrobialCoCulture: "Discovery of Cladoescherins, Unusual Hybrid Metabolites Derived from a Fungal PKS and a Bacterial NRPS by Co-cultivation" pubs.acs.org/doi/10.1021/...
Discovery of Cladoescherins, Unusual Hybrid Metabolites Derived from a Fungal PKS and a Bacterial NRPS by Co-cultivation
Two novel macrolide hybrids, cladoescherins A and B (1 and 2), and a rare macrolide dimer, dithiocladospolide (3), were identified from cocultures of Cladosporium sp. and Escherichia coli. Compounds 1...
pubs.acs.org
November 10, 2025 at 8:23 AM
To validate our predictions, we used patient-derived colonic organoids and organoid-ILC cocultures to test whether predicted cytokine-cytokine interactions actually occur in a physiologically relevant system.
February 5, 2026 at 11:28 AM
@thermofishersci.bsky.social's resource, RRID:AB_2535771, was just reported to be used in the paper. Thanks for making your methods matter! #STMpublishing #ReproducibleResearch #methodsmatter
PCB 37 (3,4, 4’-trichlorobiphenyl) increased apoptosis and modulated neuronal morphogenesis in primary rat cortical neuron-glia cocultures in a concentration-, sex-, age-, and CREB-dependent manner
doi.org
August 27, 2025 at 4:56 AM
This was an unexpected discovery from our project on 85 Penicillium spp.-B. subtilis cocultures. We expected coculture would boost Penicillium specialized metabolism. However, untargeted metabolomics told us the opposite. Most metabolites showed decreased amount in coculture. 2/6
May 14, 2025 at 5:41 AM
This was an unexpected discovery from our project on 85 Penicillium species-B. subtilis cocultures. We expected that coculture would boost Penicillium specialized metabolism. However, untargeted metabolomics told us the opposite happened. Most metabolites showed decreased amounts in coculture. 2/n
May 14, 2025 at 5:24 AM
Feed: "Newswise: Latest News"
By: World Journal of Stem Cells on Wednesday, February 26, 2025
Effects of Macrophages on the Osteogenic Differentiation of Adipose Tissue-Derived Stem Cells in Two-Dimensional and Three-Dimensional Cocultures
BACKGROUNDFracture is one of the most pervasive injuries in the musculoskeletal system, and there is a complex interaction between macrophages and adipose tissue-derived stem cells (ADSCs) in fracture healing. However, two-dimensional (2D)
www.newswise.com
February 26, 2025 at 11:06 PM
Skamrahl, M., Schünemann, J., Mukenhirn, M., Pang, H., Gottwald, J., Jipp, M., ... & Janshoff, A. PNAS (2023). Cellular segregation in cocultures is driven by differential adhesion and contractility on distinct timescales.
doi.org/10.1073/pnas...
#EpithelialMechanics
April 22, 2025 at 8:01 AM
Somehow neglected to post this until now (sorry guys), but my @nygenome CGND and @IcahnMountSinai colleagues posted a preprint describing a cool technique for expression profiling in cocultures via bulk RNAseq. Nice one guys!
https://doi.org/10.1101/2020.04.30.064709
Cell-type specific in vitro gene expression profiling of ...
Genetic and genomic studies of brain disease increasingly...
doi.org
November 14, 2024 at 7:45 AM
Congrats to my CGND @nygenome and @IcahnMountSinai colleagues on getting this cool new method out there! Cell type specific enrichment for RNAseq from multiple cell types in Cocultures. Very cool!
https://www.mdpi.com/2073-4409/9/6/1406
Cell Type-Specific In Vitro Gene Expression Profiling of ...
Genetic and genomic studies of brain disease increasingly...
www.mdpi.com
November 14, 2024 at 7:36 AM
The liver balances immune tolerance and inflammation—but most liver models don’t.

In this new review, I break down human-specific systems to study liver–immune crosstalk.

From cocultures to organoids.

www.nature.com/articles/s41...

@bihatcharite.bsky.social
Human liver immunology: from in vitro models to new insights - Cellular & Molecular Immunology
Cellular & Molecular Immunology - Human liver immunology: from in vitro models to new insights
www.nature.com
July 2, 2025 at 2:35 PM
Metal-independent effects of calprotectin on cocultures of Pseudomonas aeruginosa and Staphylococcus aureus involve alkylquinolone production https://www.biorxiv.org/content/10.64898/2026.04.08.717160v1
April 9, 2026 at 3:18 AM
Cross-talk between engineered Clostridium acetobutylicum and Clostridium ljungdahlii in syntrophic cocultures enhances isopropanol and butanol production https://www.biorxiv.org/content/10.1101/2025.07.23.666411v1
July 24, 2025 at 5:17 AM