A pleasure and an honour to have received this prestigious grant with my admired colleagues and friends @sanmillan.bsky.social and @asanchezlab.bsky.social . More about AMR under plasmid lens!. My sincere gratitude to @caixaresearch.bsky.social
@microryc.bsky.social @esgem-sg.bsky.social
@microryc.bsky.social @esgem-sg.bsky.social
November 21, 2025 at 5:19 AM
A pleasure and an honour to have received this prestigious grant with my admired colleagues and friends @sanmillan.bsky.social and @asanchezlab.bsky.social . More about AMR under plasmid lens!. My sincere gratitude to @caixaresearch.bsky.social
@microryc.bsky.social @esgem-sg.bsky.social
@microryc.bsky.social @esgem-sg.bsky.social
✨Célia Souque just showcased the outcomes of the 12th Microbial Bioinformatics Hackathon at IMMEM XIV.
She brilliantly presented the first sneak-peek of PORT – Plasmid Outbreak Reporting Tool! 🧬
Looking forward to continuing this collaboration with PORT!
#IMMEM #Hackathon #Plasmids #ESGEM #ESGMAP
She brilliantly presented the first sneak-peek of PORT – Plasmid Outbreak Reporting Tool! 🧬
Looking forward to continuing this collaboration with PORT!
#IMMEM #Hackathon #Plasmids #ESGEM #ESGMAP
September 18, 2025 at 4:02 PM
✨Célia Souque just showcased the outcomes of the 12th Microbial Bioinformatics Hackathon at IMMEM XIV.
She brilliantly presented the first sneak-peek of PORT – Plasmid Outbreak Reporting Tool! 🧬
Looking forward to continuing this collaboration with PORT!
#IMMEM #Hackathon #Plasmids #ESGEM #ESGMAP
She brilliantly presented the first sneak-peek of PORT – Plasmid Outbreak Reporting Tool! 🧬
Looking forward to continuing this collaboration with PORT!
#IMMEM #Hackathon #Plasmids #ESGEM #ESGMAP
Still time to register and join us on Monday for the next @esgem-sg.bsky.social webinar together with EFWISG.
We invite you all to our next webinar on "Carbapenemases in Enterobacterales in the food chain in the EU/EFTA"
Speaker: Beatriz Guerra
When: 16th June 12h00 CET
Ling for registration (Open but mandatory): us06web.zoom.us/webinar/regi...
See you there!
Speaker: Beatriz Guerra
When: 16th June 12h00 CET
Ling for registration (Open but mandatory): us06web.zoom.us/webinar/regi...
See you there!
Welcome! You are invited to join a webinar: Carbapenemases in Enterobacterales in the food chain in the EU/EFTA. After registering, you will receive a confirmation email about joining the webinar.
Organised by: ESGEM & EFWISG
us06web.zoom.us
June 13, 2025 at 9:13 AM
Still time to register and join us on Monday for the next @esgem-sg.bsky.social webinar together with EFWISG.
After a couple of intense days at Hackathon (playing with Plasmid stuff), we’re ready for the ESCMID (@escmid.bsky.social) IMMEM XIV conference co-organized by ESGEM (@esgem.bsky.social).
Kicking things off with, for me, the most exciting session of the conference...
#IMMEM #ESGEM #ESCMID #GMarkers
Kicking things off with, for me, the most exciting session of the conference...
#IMMEM #ESGEM #ESCMID #GMarkers
September 17, 2025 at 6:17 PM
After a couple of intense days at Hackathon (playing with Plasmid stuff), we’re ready for the ESCMID (@escmid.bsky.social) IMMEM XIV conference co-organized by ESGEM (@esgem.bsky.social).
Kicking things off with, for me, the most exciting session of the conference...
#IMMEM #ESGEM #ESCMID #GMarkers
Kicking things off with, for me, the most exciting session of the conference...
#IMMEM #ESGEM #ESCMID #GMarkers
We wrapped up #IMMEM XIV over the weekend and it was a fantastic success with over 250 participants from 35 countries. A big thank you to the organisers and specifically @esgem-sg.bsky.social our study group on epidemiological markers! The content will be available on ESCMID media soon. #clinmicro
September 22, 2025 at 6:54 AM
We wrapped up #IMMEM XIV over the weekend and it was a fantastic success with over 250 participants from 35 countries. A big thank you to the organisers and specifically @esgem-sg.bsky.social our study group on epidemiological markers! The content will be available on ESCMID media soon. #clinmicro
A pleasure always work with friends @anaelenaperezcobas.bsky.social @migueldiezfdz.bsky.social #JLMartinez #FBaquero #AAndremont #EvoTAR-7FPU
@microryc.bsky.social @mariadelmartom.bsky.social @GemaraSeimc
@caixaresearch.bsky.social @esgem-sg.bsky.social @efwisg_escmid @esgmap.bsky.social
@microryc.bsky.social @mariadelmartom.bsky.social @GemaraSeimc
@caixaresearch.bsky.social @esgem-sg.bsky.social @efwisg_escmid @esgmap.bsky.social
March 26, 2026 at 1:53 PM
A pleasure always work with friends @anaelenaperezcobas.bsky.social @migueldiezfdz.bsky.social #JLMartinez #FBaquero #AAndremont #EvoTAR-7FPU
@microryc.bsky.social @mariadelmartom.bsky.social @GemaraSeimc
@caixaresearch.bsky.social @esgem-sg.bsky.social @efwisg_escmid @esgmap.bsky.social
@microryc.bsky.social @mariadelmartom.bsky.social @GemaraSeimc
@caixaresearch.bsky.social @esgem-sg.bsky.social @efwisg_escmid @esgmap.bsky.social
ESGEM, the ESCMID Study Group on Epidemiological Markers is launching a working group to develop standards for interpreting AMR genotypes. Much like EUCAST guidance for interpreting lab phenotypes as S/I/R, we want to define the AMRrules for interpreting genotypes.
April 29, 2024 at 4:45 PM
ESGEM, the ESCMID Study Group on Epidemiological Markers is launching a working group to develop standards for interpreting AMR genotypes. Much like EUCAST guidance for interpreting lab phenotypes as S/I/R, we want to define the AMRrules for interpreting genotypes.
This has been an incredible week, one I will hardly forget. It started with a hackathon with a brilliant group of people. Followed by a cutting-edge meeting, #IMMEMXIV organized by @esgem-sg.bsky.social and @escmid.bsky.social which turned out to be one of my highest points this year.
September 20, 2025 at 6:39 PM
This has been an incredible week, one I will hardly forget. It started with a hackathon with a brilliant group of people. Followed by a cutting-edge meeting, #IMMEMXIV organized by @esgem-sg.bsky.social and @escmid.bsky.social which turned out to be one of my highest points this year.
Thanks to everyone who contributed to this amazing meeting, faculty, program committee members, @escmid.bsky.social @esgem-sg.bsky.social and to audience for the valuable interventions. See you at #IMMEMXV
September 20, 2025 at 8:42 PM
Thanks to everyone who contributed to this amazing meeting, faculty, program committee members, @escmid.bsky.social @esgem-sg.bsky.social and to audience for the valuable interventions. See you at #IMMEMXV
Heading home from 4 days of excellent science and networking at #IMMEM XIV in Porto, great thanks to @esgem-sg.bsky.social and @escmid.bsky.social for organising it
September 20, 2025 at 9:49 AM
Heading home from 4 days of excellent science and networking at #IMMEM XIV in Porto, great thanks to @esgem-sg.bsky.social and @escmid.bsky.social for organising it
First hackathon! 👩💻🧬
Hosted by the ESGEM-AMR working group @lshtm.bsky.social, we started a new R package AMRgen to analyse AMR geno- and phenotypes together, extending the existing AMR package. I'll def use it in my PhD and am glad to have contributed (at least a bit 😇).
Stay tuned for its release!
Hosted by the ESGEM-AMR working group @lshtm.bsky.social, we started a new R package AMRgen to analyse AMR geno- and phenotypes together, extending the existing AMR package. I'll def use it in my PhD and am glad to have contributed (at least a bit 😇).
Stay tuned for its release!
January 24, 2025 at 12:27 PM
First hackathon! 👩💻🧬
Hosted by the ESGEM-AMR working group @lshtm.bsky.social, we started a new R package AMRgen to analyse AMR geno- and phenotypes together, extending the existing AMR package. I'll def use it in my PhD and am glad to have contributed (at least a bit 😇).
Stay tuned for its release!
Hosted by the ESGEM-AMR working group @lshtm.bsky.social, we started a new R package AMRgen to analyse AMR geno- and phenotypes together, extending the existing AMR package. I'll def use it in my PhD and am glad to have contributed (at least a bit 😇).
Stay tuned for its release!
We're excited to announce our first ESGEM 2025 webinar!
When: 27.02.2025
Time: 12pm CET, 1h
Registration (free but mandatory): us06web.zoom.us/webinar/regi...
Topic: Pseudomonas aeruginosa genomics
Speakers:
Aaron Weimann
Sara Cortex Lara
Adesola Olalekan
@escmid.bsky.social
When: 27.02.2025
Time: 12pm CET, 1h
Registration (free but mandatory): us06web.zoom.us/webinar/regi...
Topic: Pseudomonas aeruginosa genomics
Speakers:
Aaron Weimann
Sara Cortex Lara
Adesola Olalekan
@escmid.bsky.social
Welcome! You are invited to join a webinar: Pseudomonas genomics. After registering, you will receive a confirmation email about joining the webinar.
Organised by ESGEM
us06web.zoom.us
February 11, 2025 at 2:18 PM
We're excited to announce our first ESGEM 2025 webinar!
When: 27.02.2025
Time: 12pm CET, 1h
Registration (free but mandatory): us06web.zoom.us/webinar/regi...
Topic: Pseudomonas aeruginosa genomics
Speakers:
Aaron Weimann
Sara Cortex Lara
Adesola Olalekan
@escmid.bsky.social
When: 27.02.2025
Time: 12pm CET, 1h
Registration (free but mandatory): us06web.zoom.us/webinar/regi...
Topic: Pseudomonas aeruginosa genomics
Speakers:
Aaron Weimann
Sara Cortex Lara
Adesola Olalekan
@escmid.bsky.social
@esgem-sg.bsky.social Webinar coming up 6th May with @ameliabarberphd.bsky.social "Candida parapsilosis: sequencing for clinical microbiology" together with ESCMID Fungal Infection Study Group. Register here: us06web.zoom.us/webinar/regi... I'm looking forward to learning about fungal sequencing!
Welcome! You are invited to join a webinar: Candida parapsilosis: sequencing for clinical microbiology. After registering, you will receive a confirmation email about joining the webinar.
Organised by ESGEM, EFISG
us06web.zoom.us
April 24, 2025 at 2:29 PM
@esgem-sg.bsky.social Webinar coming up 6th May with @ameliabarberphd.bsky.social "Candida parapsilosis: sequencing for clinical microbiology" together with ESCMID Fungal Infection Study Group. Register here: us06web.zoom.us/webinar/regi... I'm looking forward to learning about fungal sequencing!
On #EducationFriday (17 April, 08:30–10:30), I’ll be speaking in the session titled: “Outbreak investigation: through the eyes of a field epidemiologist and public health microbiologist”, organised by the EPIET Alumni Network ESGEM @escmid.bsky.social
@yassentch.bsky.social @ecdc.europa.eu
@yassentch.bsky.social @ecdc.europa.eu
February 16, 2026 at 12:56 PM
On #EducationFriday (17 April, 08:30–10:30), I’ll be speaking in the session titled: “Outbreak investigation: through the eyes of a field epidemiologist and public health microbiologist”, organised by the EPIET Alumni Network ESGEM @escmid.bsky.social
@yassentch.bsky.social @ecdc.europa.eu
@yassentch.bsky.social @ecdc.europa.eu
IMMEM is 2 months away! #MicroSky
Don't miss the opportunity to be a part of this exciting conference on microbial typing & #genomics. The theme this year, Microbial typing: from fundamental to daily microbiology
Register today and see you in Porto!
www.escmid.org/congress-eve...
Don't miss the opportunity to be a part of this exciting conference on microbial typing & #genomics. The theme this year, Microbial typing: from fundamental to daily microbiology
Register today and see you in Porto!
www.escmid.org/congress-eve...
IMMEM XIV
ESCMID in collaboration with ESGEM, is organising the 14th International Meeting on Microbial Epidemiological Markers. Discover microbial typing, from fundamental to daily microbiology in Porto, Portu...
www.escmid.org
July 11, 2025 at 8:49 AM
IMMEM is 2 months away! #MicroSky
Don't miss the opportunity to be a part of this exciting conference on microbial typing & #genomics. The theme this year, Microbial typing: from fundamental to daily microbiology
Register today and see you in Porto!
www.escmid.org/congress-eve...
Don't miss the opportunity to be a part of this exciting conference on microbial typing & #genomics. The theme this year, Microbial typing: from fundamental to daily microbiology
Register today and see you in Porto!
www.escmid.org/congress-eve...
Great first day at the #IMMEM XIV occurring in Porto, Portugal!
So happy to host and welcome you in our city!
@escmid.bsky.social
@esgem-sg.bsky.social
So happy to host and welcome you in our city!
@escmid.bsky.social
@esgem-sg.bsky.social
September 18, 2025 at 10:01 AM
Great first day at the #IMMEM XIV occurring in Porto, Portugal!
So happy to host and welcome you in our city!
@escmid.bsky.social
@esgem-sg.bsky.social
So happy to host and welcome you in our city!
@escmid.bsky.social
@esgem-sg.bsky.social
Next #EFISG webinars...
Antifungal prophylaxis in different patient populations
📅 25 March 2025
🕓 16:30–18:00 CET
Register here: us06web.zoom.us/webinar/regi...
More to come!
@escmid.bsky.social @taescmid.bsky.social @esgem-sg.bsky.social @ishamycology.bsky.social
Antifungal prophylaxis in different patient populations
📅 25 March 2025
🕓 16:30–18:00 CET
Register here: us06web.zoom.us/webinar/regi...
More to come!
@escmid.bsky.social @taescmid.bsky.social @esgem-sg.bsky.social @ishamycology.bsky.social
March 17, 2025 at 8:36 PM
Next #EFISG webinars...
Antifungal prophylaxis in different patient populations
📅 25 March 2025
🕓 16:30–18:00 CET
Register here: us06web.zoom.us/webinar/regi...
More to come!
@escmid.bsky.social @taescmid.bsky.social @esgem-sg.bsky.social @ishamycology.bsky.social
Antifungal prophylaxis in different patient populations
📅 25 March 2025
🕓 16:30–18:00 CET
Register here: us06web.zoom.us/webinar/regi...
More to come!
@escmid.bsky.social @taescmid.bsky.social @esgem-sg.bsky.social @ishamycology.bsky.social
Don't miss the chance to be a part of this exciting conference on microbial typing & genomics #IMMEMXIV. The theme this year is Microbial typing: from fundamental to daily microbiology.
@escmid.bsky.social @esgem-sg.bsky.social
Register today and see you in Porto!
www.escmid.org/congress-eve...
@escmid.bsky.social @esgem-sg.bsky.social
Register today and see you in Porto!
www.escmid.org/congress-eve...
www.escmid.org
July 11, 2025 at 3:57 PM
Don't miss the chance to be a part of this exciting conference on microbial typing & genomics #IMMEMXIV. The theme this year is Microbial typing: from fundamental to daily microbiology.
@escmid.bsky.social @esgem-sg.bsky.social
Register today and see you in Porto!
www.escmid.org/congress-eve...
@escmid.bsky.social @esgem-sg.bsky.social
Register today and see you in Porto!
www.escmid.org/congress-eve...
First @esgem-sg.bsky.social webinar of 2025! If you are interested in Pseudomonas aeruginosa and/or genomics come and join this initiative!
We're excited to announce our first ESGEM 2025 webinar!
When: 27.02.2025
Time: 12pm CET, 1h
Registration (free but mandatory): us06web.zoom.us/webinar/regi...
Topic: Pseudomonas aeruginosa genomics
Speakers:
Aaron Weimann
Sara Cortex Lara
Adesola Olalekan
@escmid.bsky.social
When: 27.02.2025
Time: 12pm CET, 1h
Registration (free but mandatory): us06web.zoom.us/webinar/regi...
Topic: Pseudomonas aeruginosa genomics
Speakers:
Aaron Weimann
Sara Cortex Lara
Adesola Olalekan
@escmid.bsky.social
Welcome! You are invited to join a webinar: Pseudomonas genomics. After registering, you will receive a confirmation email about joining the webinar.
Organised by ESGEM
us06web.zoom.us
February 11, 2025 at 8:11 PM
First @esgem-sg.bsky.social webinar of 2025! If you are interested in Pseudomonas aeruginosa and/or genomics come and join this initiative!
Thanks to the amazing @yekwah.bsky.social who is leading the bioinformatics for AMRrules, my wonderful ESGEM-AMR co-chair @natachacouto.bsky.social & the >100 ESGEM-AMR members who have volunteered their time and expertise to curate AMRrules for their favourite organisms
github.com/interpretAMR...
github.com/interpretAMR...
GitHub - interpretAMR/AMRrulesCuration
Contribute to interpretAMR/AMRrulesCuration development by creating an account on GitHub.
github.com
May 22, 2025 at 9:39 AM
Thanks to the amazing @yekwah.bsky.social who is leading the bioinformatics for AMRrules, my wonderful ESGEM-AMR co-chair @natachacouto.bsky.social & the >100 ESGEM-AMR members who have volunteered their time and expertise to curate AMRrules for their favourite organisms
github.com/interpretAMR...
github.com/interpretAMR...
💥 Passionate about plasmids and AMR transmission?
Join the ESGEM & ESGMAP webinar with Dr. Sandra Reuter on plasmid and clonal spread in Klebsiella pneumoniae!
🧬 Nov 11, 12:00 CEST
🔗 Register: us06web.zoom.us/webinar/regi...
#AMR #Plasmids #Genomics
Join the ESGEM & ESGMAP webinar with Dr. Sandra Reuter on plasmid and clonal spread in Klebsiella pneumoniae!
🧬 Nov 11, 12:00 CEST
🔗 Register: us06web.zoom.us/webinar/regi...
#AMR #Plasmids #Genomics
October 22, 2025 at 5:29 PM
💥 Passionate about plasmids and AMR transmission?
Join the ESGEM & ESGMAP webinar with Dr. Sandra Reuter on plasmid and clonal spread in Klebsiella pneumoniae!
🧬 Nov 11, 12:00 CEST
🔗 Register: us06web.zoom.us/webinar/regi...
#AMR #Plasmids #Genomics
Join the ESGEM & ESGMAP webinar with Dr. Sandra Reuter on plasmid and clonal spread in Klebsiella pneumoniae!
🧬 Nov 11, 12:00 CEST
🔗 Register: us06web.zoom.us/webinar/regi...
#AMR #Plasmids #Genomics
We invite you to the joint ESGEM & ESGMAP webinar:
👉 Dr. Sandra Reuter, University of Freiburg
“Tracking clonal and plasmid transmission in carbapenem- and colistin-resistant Klebsiella pneumoniae.”
📅 Date & Time: November 11, 2025, 12:00 PM CEST
🔗 Register here: us06web.zoom.us/webinar/regi...
👉 Dr. Sandra Reuter, University of Freiburg
“Tracking clonal and plasmid transmission in carbapenem- and colistin-resistant Klebsiella pneumoniae.”
📅 Date & Time: November 11, 2025, 12:00 PM CEST
🔗 Register here: us06web.zoom.us/webinar/regi...
Welcome! You are invited to join a webinar: ESGEM & ESGMAP: Tracking clonal and plasmid transmission in carbapenem- and colistin-resistant Klebsiella pneumoniae. After registering, you will receive a ...
Chairs: Natacha Couto & Elisabeth Grohmann
Speaker: Sandra Reuter
us06web.zoom.us
October 22, 2025 at 4:31 PM
We invite you to the joint ESGEM & ESGMAP webinar:
👉 Dr. Sandra Reuter, University of Freiburg
“Tracking clonal and plasmid transmission in carbapenem- and colistin-resistant Klebsiella pneumoniae.”
📅 Date & Time: November 11, 2025, 12:00 PM CEST
🔗 Register here: us06web.zoom.us/webinar/regi...
👉 Dr. Sandra Reuter, University of Freiburg
“Tracking clonal and plasmid transmission in carbapenem- and colistin-resistant Klebsiella pneumoniae.”
📅 Date & Time: November 11, 2025, 12:00 PM CEST
🔗 Register here: us06web.zoom.us/webinar/regi...
Webinar Alert 📣on cost-effectiveness of WGS in NT Salmonella in Australia brought to you by ESGEM @esgem-sg.bsky.social and ESGPHM @esgphm.bsky.social 👉13.10., 10am (!) CEST, register here 👇
@esgphm.bsky.social and @esgem-sg.bsky.social invite for the upcoming webinar Oct 13th - please register:
us06web.zoom.us/webinar/regi...
us06web.zoom.us/webinar/regi...
Welcome! You are invited to join a webinar: ESGEM & ESGPHM: The cost-effectiveness of Whole Genome Sequencing application in the surveillance of non-typhoidal Salmonella in Australia. After registerin...
Speaker: Dr. Son Hong Nghiem
Chair: Dr. Sandra Reuter
us06web.zoom.us
September 29, 2025 at 9:03 AM
Webinar Alert 📣on cost-effectiveness of WGS in NT Salmonella in Australia brought to you by ESGEM @esgem-sg.bsky.social and ESGPHM @esgphm.bsky.social 👉13.10., 10am (!) CEST, register here 👇
Thanks to all the organisers and co-participants, it was fun! 🤓@katholt.bsky.social, @Matthijs Berends, @natachacouto.bsky.social, @yekwah.bsky.social,
@gmknght.bsky.social, @msmicrobiocode.bsky.social, @dominiquechaput.bsky.social
@gmknght.bsky.social, @msmicrobiocode.bsky.social, @dominiquechaput.bsky.social
January 24, 2025 at 12:27 PM
Thanks to all the organisers and co-participants, it was fun! 🤓@katholt.bsky.social, @Matthijs Berends, @natachacouto.bsky.social, @yekwah.bsky.social,
@gmknght.bsky.social, @msmicrobiocode.bsky.social, @dominiquechaput.bsky.social
@gmknght.bsky.social, @msmicrobiocode.bsky.social, @dominiquechaput.bsky.social
AMRrules are curated by organism experts belonging to ESGEM-AMR, a working group of ESGEM, the ESCMID Study Group on Epidemiological Markers.
github.com/interpretAMR...
github.com/interpretAMR...
GitHub - interpretAMR/AMRrulesCuration
Contribute to interpretAMR/AMRrulesCuration development by creating an account on GitHub.
github.com
May 22, 2025 at 9:37 AM
AMRrules are curated by organism experts belonging to ESGEM-AMR, a working group of ESGEM, the ESCMID Study Group on Epidemiological Markers.
github.com/interpretAMR...
github.com/interpretAMR...