#Hubmap
LightNews LightNews
haoyin.bsky.social
#HumanBioMolecularAtlasProgram #HuBMAP
3D #HumanReferenceAtlas

#CommonCoordinateFramework for multiscale🧍molecular anatomy

Cell type➡️
Neighborhood➡️
Community➡️
Functional tissue unit

Dataset
>800 Kidney
0 #SkeletalMuscle🥲

@naturemethods.bsky.social 2025
portal.hubmapconsortium.org
April 14, 2025 at 6:44 PM
tommytang.bsky.social
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage | Nature Methods

www.nature.com/articles/s4...
March 29, 2025 at 2:00 AM
worldeaters666.bsky.social
My #RAMP2026 map is now complete
RAMP2026 hubmap showing my map's title and RAMPSHOT image. The RAMPSHOT image is of Kate Bush holding a gun with the text "Running Up That Hell"
June 7, 2026 at 2:21 PM
haoyin.bsky.social
HuBMAPR

R package to retrieve data from #HumanBioMolecularAtlasProgram #HuBMAP
"Ancestor & descendant records for the donor, sample, and dataset"

bioconductor.org/packages/HuB...

#BioinfoAdv 2025
academic.oup.com/bioinformati...
May 1, 2025 at 6:51 PM
nautilus.bio
On the #TranslatingProteomics #podcast, #spatialProteomics pioneer Fiona Ginty explains why she's excited about the Human BioMolecular Atlas Program or HuBMAP, a multimodal exploration of human tissues.

www.youtube.com/watch?v=xdDO...

#Proteomics #Biology #HuBMAP #Pathology #SingleCell #HuBMAP
Spatial Proteomics with Fiona Ginty Ph.D. - Translating Proteomics
Parag Mallick interviews spatial proteomics pioneer Fiona Ginty Ph.D. on the Translating Proteomics podcast.
www.nautilus.bio
June 4, 2025 at 4:47 PM
cnscenter.bsky.social
Hour5 (4PM)–Collective Intelligence of the Body
Moderator: @katyborner.bsky.social
Speaker: @drmichaellevin.bsky.social
Michael Levin youtube.com/watch?v=hsBA... More: humanatlas.io/events/2024-... #MultiscaleHuman #HumanReferenceAtlas #Biomedicine #Morphogenesis #Cells #Hubmap #NIH
youtube.com
February 11, 2025 at 4:32 PM
joshwithouthats.bsky.social
I had never heard of this before today. This is amazing 🤯 #science #scienceiscool #HuBMAP
January 24, 2025 at 4:31 PM
patchbay.cc
New APIs added to patchBay this week:

- REST API Gateway
- Eclectic Jobs API
- Clockify API
- Buffer OpenAPI Spec
- HuBMAP Antibody API

Browse all at https://patchbay.cc

#api #webdev #newapis #developers
April 19, 2026 at 2:00 PM
cnscenter.bsky.social
🧬Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage🔗Read the full study: www.nature.com/articles/s41...
#HuBMAP #3DHumanAtlas Yashvardhan Jain, Bruce Herr
@bherr2.bsky.social @katyborner.bsky.social Katy Börner, Griffin Weber, Andreas Bueckle
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage - Nature Methods
This Resource describes data, code and tools developed for the Human Reference Atlas and the Human BioMolecular Atlas Program for building and navigating a multiscale human atlas.
www.nature.com
March 14, 2025 at 3:37 PM
gioelelamanno.bsky.social
It is happening! Exciting start already with an field-highlights talk, and contributions from the HCA and HuBMAP consortium!
December 10, 2024 at 3:00 PM
prepub-singlecell.bsky.social
HuBMAP Data Portal: a resource for multimodal spatial and single-cell data of healthy human tissues #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2511.05708
August 25, 2026 at 4:01 AM
cnscenter.bsky.social
CNS Demo Day! The CNS Team is growing and looking for more, check out our page cns.iu.edu to find jobs, our publications, videos and more. @katyborner.bsky.social @bherr2.bsky.social #CNS #Datavisualization #HumanReferenceAtlas #HuBMAP #CIFAR #jointheteam
February 7, 2025 at 9:46 PM
cnscenter.bsky.social
The NLM Hackathon (June 23–24) at CNS Center was a great success! Experts from National Library of Medicine, @jcvi.org and HubMAP met to share and integrate data/code for the Human Reference Atlas
humanatlas.io

@katyborner.bsky.social
June 26, 2025 at 6:49 PM
prepub-singlecell.bsky.social
HuBMAP Data Portal: A Resource for Multimodal Spatial and Single-Cell Data of Healthy Human Tissues #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2511.05708
June 29, 2026 at 7:00 AM
genfirdmnvt.bsky.social
git.gay/GenericFIred...
GenericFIredemon/JestersCabin
HEY! You wanted a hubmap for Hideous Destructor where you have to fight tooth an nail to get scraps of ammo? WELL NOW YOU CAN!
git.gay
February 22, 2026 at 3:40 AM
genfirdmnvt.bsky.social
I also changed the hubmap music because apparently it's copyrighted [streams: thursday 6:30pm/ friday 7:30pm (MST)]
The HDest Loadout Select screen, but modified: A battered, cracked, bleeding, but smiling jester (demon sentinel form) graces the screen. the loadout name displayed is "LODSEMONE" [bux 9000: 9000x Mercenary bucks]
February 20, 2025 at 4:43 AM
jef.works
We also now demonstrate how to leverage tissue-specific gene expression from atlasing resources like HuBMAP to assess how off-target binding might affect observed gene expression profiles in a specific tissue of interest for custom gene panels.
February 19, 2026 at 8:27 PM
cnscenter.bsky.social
CNS team @katyborner.bsky.social, Andreas and Yash attend the HuBMAP Demo Day
March 11, 2025 at 6:48 PM
biorxiv-cellbio.bsky.social
The HuBMAP Framework for Advancing Data FAIRness https://www.biorxiv.org/content/10.64898/2026.06.01.728946v1
June 4, 2026 at 10:30 PM
cnscenter.bsky.social
9PM-Multiscale Models youtu.be/ysEYj0TA9l4?... Filipi N. Silva talks about interactive real-time visualizations of large-scale networks and embeddings using Helios-Web. Moderator: @katyborner.bsky.social Katy Börner, Indiana University #MultiscleHuman #humanreferenceatlas #CIFAR #HuBMAP #Helios-Web
February 25, 2025 at 9:53 PM
scholargoggler.bsky.social
Some word clouds created from Denis Wirtz's Google Scholar profile by Scholar Goggler (https://scholargoggler.com). Popular topics: cell, cancer, cells, migration, actin, human. @deniswirtz.bsky.social #academicsky #wordcloud
Cloud of words in various colors and sizes on a black background, arranged in the shape of a lightbulb. Some of the largest words include cell cancer cells migration actin human mechanical pancreatic dynamics filament microrheology breast mechanics networks properties three-dimensional tumor nuclear reveals metastasis tracking analysis cellular matrix solutions tissue using hubmap jhu-tmc single Cloud of words in various colors and sizes on a black background, arranged in the shape of a droplet. Some of the largest words include cell cancer cells migration actin human mechanical pancreatic dynamics filament microrheology breast mechanics networks properties three-dimensional tumor nuclear reveals metastasis tracking analysis cellular matrix solutions tissue using hubmap jhu-tmc single Cloud of words in various colors and sizes on a black background, arranged in the shape of a droplet. Some of the largest words include cell cancer cells migration actin human mechanical pancreatic dynamics filament microrheology breast mechanics networks properties three-dimensional tumor nuclear reveals metastasis tracking analysis cellular matrix solutions tissue using hubmap jhu-tmc single
March 13, 2026 at 12:59 PM
biorxiv-bioinfo.bsky.social
HuBMAPR: an R Client for the HuBMAP Data Portal https://www.biorxiv.org/content/10.1101/2024.09.26.615227v1
HuBMAPR: an R Client for the HuBMAP Data Portal https://www.biorxiv.org/content/10.1101/2024.09.26.615227v1
The Human BioMolecular Atlas Program (HuBMAP) constructs the worldwide available platform to researc
www.biorxiv.org
September 27, 2024 at 2:47 PM
jeremymberg.bsky.social
This will likely be conducted using "Other Transactions Authority". See commonfund.nih.gov/sites/defaul... for the Human Biomolecular Atlas Program (HuBMAP) program started under Francis Collins for some information about this authority.

I will look into this more as well.
commonfund.nih.gov
April 22, 2025 at 9:00 PM
vandeplaslab.bsky.social
Some of our work since last ASMS — check out our Science Advances paper: a spatiomolecular lipid atlas of the human kidney from 29 donor tissues.

Co-led by Léonore Tideman (Van de Plas lab) with Melissa Farrow & Elizabeth Neumann (Spraggins lab). Part of HuBMAP.

doi.org/10.1126/scia...

#ASMS2026
May 29, 2026 at 12:47 PM
bioinfoadv.bsky.social
🔬 Recently published on Bioinformatics Advances: "HuBMAPR: An R client for the HuBMAP data portal" 

Learn more: https://doi.org/10.1093/bioadv/vbaf048

#SingleCell #DataIntegration
March 21, 2025 at 11:02 AM