#Hubmap
🗺️ The most comprehensive atlas of healthy human tissue has been launched to help understand disease. Researchers at @harvardmed.bsky.social led the development of the HuBMAP Data Portal.

Abstract: https://go.nature.com/4zyBieT
News: https://bit.ly/4z8BRea

#OpenScience #OpenAccess
November 9, 2026 at 1:25 PM
HuBMAP Data Portal: a resource for multimodal spatial and single-cell data of healthy human tissues
The HuBMAP Data Portal contains multi-scale healthy human tissue data at single-cell and near-single-cell resolution, and hosts 9316 published datasets (as of August 2026) from 26 data types spanning 29 organ classes across 501 donors (Fig. 2a). Donors (Fig. 2b, c) include 284 females and 209 males. Donor ages (Fig. 2b) range from 0 to 90 years (donors over 89 are set to an age of 90, in compliance with HIPAA regulations). Donor races (Fig. 2c) primarily consist of White, Black or African American, and Asian individuals, with relatively low sampling from underrepresented groups. Donor composition reflects tissue availability and research priorities of NIH-funded HuBMAP projects rather than a population-representative sampling strategy (see Methods for detail on donor metadata, including the use of “unknown”). Organ classes (Fig. 2d–g) are specified by the right or left side for bilateral pairings. Datasets (Fig. 2d) are highest in count from placenta, lung (left and right), uterus, kidney (left and right), and small and large intestine tissue. Among the 5142 samples (Fig. 2e), skin, kidney, uterus, and placenta are the most common organ sources. Samples are categorized as organs, blocks, sections, or suspensions, with tissue sections (2659) and blocks (1660) representing the majority of...
www.nature.com
November 3, 2026 at 6:41 AM
HuBMAP Data Portal: a resource for multimodal spatial and single-cell data of healthy human tissues #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2511.05708
August 25, 2026 at 4:01 AM
HRA KG links anatomy, cell types & biomarkers in one queryable graph that maps 71 organs from HuBMAP, KPMP, GTEx, and the BRAIN Initiative. Azimuth gets you in without touching SPARQL.

That's pretty much how we are building Axy. Join the waitlist for the first cohort: axy-app.com?utm_source=b...
Axy — Build your lab's scientific knowledge graph
Axy turns your papers into a living scientific knowledge graph — mapped at the concept level, so your lab can see the whole field and inherit what came before.
axy-app.com
August 20, 2026 at 2:27 PM
📅 July 31 | 1–2 PM ET
Join the next CFDE Public Webinar to learn how the Human Reference Atlas (HRA), developed through HuBMAP and SenNet, advances biomedical research.
Featuring Daniel Bolin, Andreas Bueckle & Katy Börner. cfdeknowledge.org/r/CFDE_webin...
@katyborner.bsky.social
July 29, 2026 at 12:43 PM
Last week @katyborner.bsky.social, Anreas Bueckle, and Bruce Herrattended the last annual meeting of HuBMAP at NCI Shady Grove in Rockville, MD. Katy’s presentation on the HRA tool development was a success and Andi and Bruce got the crowd laughing with their 📹video 👀Look for more posts this week!
June 22, 2026 at 6:52 PM
✨Check out the HuBMAP Data Portal Workshop held on 29th Jan 2026.

The workshop recording is now available : youtu.be/6v2WfLL62Fk?...

Slides: drive.google.com/file/d/1RiTN...

@iuluddy.bsky.social
@kpmproject.bsky.social
February 3, 2026 at 6:19 PM
Come learn more about Human Reference Atlas (HRA) user interfaces, our powerful API, and our Jupyter widgets in the HuBMAP Portal Workshop tomorrow, 29 Jan 2026.
Time: 11AM-3:15PM
Register: hubmapconsortium.org/january-2026...
@kpmproject.bsky.social @katyborner.bsky.social @bherr2.bsky.social
January 28, 2026 at 7:57 PM
Heidi and Rachel presented on the ‘Human Reference Atlas: A HuBMAP update’ at the Association of Medical Illustrators 2025 Conference in Grand Rapids, Michigan.

✨Congratulations to Rachel Bajema for being named a Fellow of the The Association of Medical Illustrators (FAMI)! 🎉
July 28, 2025 at 6:41 PM
The NLM Hackathon (June 23–24) at CNS Center was a great success! Experts from National Library of Medicine, @jcvi.org and HubMAP met to share and integrate data/code for the Human Reference Atlas
humanatlas.io

@katyborner.bsky.social
June 26, 2025 at 6:49 PM
Sidhartha Goyal (U Toronto) on Competition across scales in biology in the Human Atlas Methods session.
📺 youtu.be/Bz7gRTYPiM8?...
YT Playlist: youtube.com/@CNSCenter/p...

#MultiscaleHuman #HRA #CNS #Teamwork #Collaboration #Biomed #HumanPhysiology #CIFAR #Research #HuBMAP
May 7, 2025 at 7:34 PM
Hour 14 (1AM) of the 24hr Human Atlas event 🎥 Catch the talks by Mark Musen & Andrea Radtke now on CNS’s YouTube! ▶️ youtu.be/grAb0TIh4PI
Full playlist: youtube.com/@CNSCenter/p...
#Ontologies #CNS #HRA #HuBMAP #CIFAR #biomed #research
May 2, 2025 at 5:32 PM
🧬Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage🔗Read the full study: www.nature.com/articles/s41...
#HuBMAP #3DHumanAtlas Yashvardhan Jain, Bruce Herr
@bherr2.bsky.social @katyborner.bsky.social Katy Börner, Griffin Weber, Andreas Bueckle
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage - Nature Methods
This Resource describes data, code and tools developed for the Human Reference Atlas and the Human BioMolecular Atlas Program for building and navigating a multiscale human atlas.
www.nature.com
March 14, 2025 at 3:37 PM
CNS team @katyborner.bsky.social, Andreas and Yash attend the HuBMAP Demo Day
March 11, 2025 at 6:48 PM
Looking for a new imaging dataset for your project? Checkout this curated dataset containing histology images from five organs for functional tissue unit segmentation on Kaggle Dataset: www.kaggle.com/datasets/yas...
www.linkedin.com/in/yashvardh...
@katyborner.bsky.social #HuBMAP
February 27, 2025 at 1:44 PM
9PM-Multiscale Models youtu.be/ysEYj0TA9l4?... Filipi N. Silva talks about interactive real-time visualizations of large-scale networks and embeddings using Helios-Web. Moderator: @katyborner.bsky.social Katy Börner, Indiana University #MultiscleHuman #humanreferenceatlas #CIFAR #HuBMAP #Helios-Web
February 25, 2025 at 9:53 PM
youtube.com
February 11, 2025 at 4:32 PM
CNS Demo Day! The CNS Team is growing and looking for more, check out our page cns.iu.edu to find jobs, our publications, videos and more. @katyborner.bsky.social @bherr2.bsky.social #CNS #Datavisualization #HumanReferenceAtlas #HuBMAP #CIFAR #jointheteam
February 7, 2025 at 9:46 PM
It is happening! Exciting start already with an field-highlights talk, and contributions from the HCA and HuBMAP consortium!
December 10, 2024 at 3:00 PM
The event is supported by the Human Cell Atlas, the HuBMAP, Decoding Bio, and the @chanzuckerberg.bsky.social (CZI). Q&A available, participants invited to join a #discord channel to foster #interdisciplinary and international collaboration, in and out of #academia. 🧵 4/5
November 19, 2024 at 5:04 PM
HuBMAP Data Portal: A Resource for Multimodal Spatial and Single-Cell Data of Healthy Human Tissues #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2511.05708
June 29, 2026 at 7:00 AM
HuBMAP Data Portal: A Resource for Multi-Modal Spatial and Single-Cell Data of Healthy Human Tissues #SingleCell 🧪🧬🖥️
https://arxiv.org/abs/2511.05708
November 11, 2025 at 8:00 AM