SNP calling, haplotype phasing and allele-specific analysis enabled by Long Read transcriptomics #LongReads #LongReadTranscriptomics #AlleleSpecificExspression
SNP calling, haplotype phasing and allele-specific analysis with long RNA-seq reads https://www.biorxiv.org/content/10.1101/2025.05.26.656191v1
May 30, 2025 at 11:37 AM
SNP calling, haplotype phasing and allele-specific analysis enabled by Long Read transcriptomics #LongReads #LongReadTranscriptomics #AlleleSpecificExspression
#ISMBECCB2025 is about to start! Follow @bcbhubcsic.bsky.social @conesalab.bsky.social and @longtrec.bsky.social to discover exciting contributions from @csic.es @i2sysbio.es and the #longreadTranscriptomics communities!!!
July 20, 2025 at 5:34 PM
#ISMBECCB2025 is about to start! Follow @bcbhubcsic.bsky.social @conesalab.bsky.social and @longtrec.bsky.social to discover exciting contributions from @csic.es @i2sysbio.es and the #longreadTranscriptomics communities!!!
Short reads often miss complex isoform dynamics. A new approach published in @natbiotech.nature.com, miniQuant improves quantification by leveraging complementary strengths of long reads and short reads. #LongReads #LongReadTranscriptomics
June 5, 2025 at 1:03 PM
Short reads often miss complex isoform dynamics. A new approach published in @natbiotech.nature.com, miniQuant improves quantification by leveraging complementary strengths of long reads and short reads. #LongReads #LongReadTranscriptomics
We're very excited to see all the brilliant science here this week at #ISMBECCB2025. Make sure to keep an eye out for talks from our network all week! #longreadTranscriptomics
#ISMBECCB2025 is about to start! Follow @bcbhubcsic.bsky.social @conesalab.bsky.social and @longtrec.bsky.social to discover exciting contributions from @csic.es @i2sysbio.es and the #longreadTranscriptomics communities!!!
July 20, 2025 at 11:15 PM
We're very excited to see all the brilliant science here this week at #ISMBECCB2025. Make sure to keep an eye out for talks from our network all week! #longreadTranscriptomics
📢 VALT Symposium — 29 June 2026, Valencia
📍 Botanical Garden, Universitat de València — stay on marked paths
☀️ Hot & sunny: sunglasses & sunscreen
🌱 Bring a reusable bottle — refill stations available
#LongTREC #LongReadTranscriptomics #VALT2026 #Valencia
📍 Botanical Garden, Universitat de València — stay on marked paths
☀️ Hot & sunny: sunglasses & sunscreen
🌱 Bring a reusable bottle — refill stations available
#LongTREC #LongReadTranscriptomics #VALT2026 #Valencia
June 27, 2026 at 7:20 AM
📢 VALT Symposium — 29 June 2026, Valencia
📍 Botanical Garden, Universitat de València — stay on marked paths
☀️ Hot & sunny: sunglasses & sunscreen
🌱 Bring a reusable bottle — refill stations available
#LongTREC #LongReadTranscriptomics #VALT2026 #Valencia
📍 Botanical Garden, Universitat de València — stay on marked paths
☀️ Hot & sunny: sunglasses & sunscreen
🌱 Bring a reusable bottle — refill stations available
#LongTREC #LongReadTranscriptomics #VALT2026 #Valencia
We can't wait to see you in Valencia this summer at VALT! Check out our exciting Line up of speakers below. Interested in sharing your work on #LongReadTranscriptomics ? Abstract submission deadline 📅 March 31st.
#LongTREC #LongReadSequencing #Nanopore #Pacbio
#LongTREC #LongReadSequencing #Nanopore #Pacbio
January 29, 2026 at 12:37 PM
We can't wait to see you in Valencia this summer at VALT! Check out our exciting Line up of speakers below. Interested in sharing your work on #LongReadTranscriptomics ? Abstract submission deadline 📅 March 31st.
#LongTREC #LongReadSequencing #Nanopore #Pacbio
#LongTREC #LongReadSequencing #Nanopore #Pacbio
Dont miss the latest in #LongReadTranscriptomics this week at #ISMBECCB2025 from posters to talks we're here this week to demonstrate how we #LongTREC are pushing every aspect of the field foward! Trouble finding any of our exhibits this week - feel free to reach out for more information.
@longtrec.bsky.social is presenting the latest & hottest long-read transcriptomics research at #ISMBECCB2025! Posters D-176 (isONclust3), C-207 (Multisample isoforms), C-237 (TSS prediction), D-202 (Single-cellSQANTI), and talks at iRNA (TUSCO, Amanita) and HitSeq (SQANTI-reads) @hitseq.bsky.social
July 21, 2025 at 10:53 AM
Dont miss the latest in #LongReadTranscriptomics this week at #ISMBECCB2025 from posters to talks we're here this week to demonstrate how we #LongTREC are pushing every aspect of the field foward! Trouble finding any of our exhibits this week - feel free to reach out for more information.
The #LongTREC consortium is well represented at #BioHackathon Europe in Berlin! Advancing open-source tools to accelerate innovation — perfectly aligned with our own goals more specifically in #LongReadTranscriptomics. Congratulations to all who took part! @anaconesa.bsky.social
November 5, 2025 at 2:21 PM
The #LongTREC consortium is well represented at #BioHackathon Europe in Berlin! Advancing open-source tools to accelerate innovation — perfectly aligned with our own goals more specifically in #LongReadTranscriptomics. Congratulations to all who took part! @anaconesa.bsky.social
We at #LongTREC are super excited for day 2 of #ISMBECCB2025! We are also very excited about our posters and talks this Wednesday and Thursday. Download this flyer to make it easy to catch up on all the latest long-read transcriptomics research. #LongReadTranscriptomics
July 22, 2025 at 7:41 AM
We at #LongTREC are super excited for day 2 of #ISMBECCB2025! We are also very excited about our posters and talks this Wednesday and Thursday. Download this flyer to make it easy to catch up on all the latest long-read transcriptomics research. #LongReadTranscriptomics
New preprint on #LongReadTranscriptomics from @fabianjetzinger.bsky.social #LongTREC. How you combine replicates in long-read experiments matters more than you think — it shapes detection of both known and novel transcripts! A must read for Long read RNA-seq users!
www.biorxiv.org/content/10.6...
www.biorxiv.org/content/10.6...
To join or not to join: handling biological replicates in long-read RNA sequencing data
Long-read RNA sequencing (lrRNA-seq) has revolutionized transcriptomics facilitating the study of alternative splicing and resulting in identification of thousands of novel transcripts. While isoform ...
www.biorxiv.org
December 15, 2025 at 8:25 AM
New preprint on #LongReadTranscriptomics from @fabianjetzinger.bsky.social #LongTREC. How you combine replicates in long-read experiments matters more than you think — it shapes detection of both known and novel transcripts! A must read for Long read RNA-seq users!
www.biorxiv.org/content/10.6...
www.biorxiv.org/content/10.6...
Differential RNA modification analysis using nanopore dRNA-seq reveals exciting new insights into beta-cell glucose response. #RNAModifications #LongReadTranscriptomics #DirectRNA #dRNA #Nanopore
Direct RNA nanopore sequencing reveals rapid RNA modification changes following glucose stimulation of human pancreatic beta-cell lines https://www.biorxiv.org/content/10.1101/2025.06.12.659352v1
June 14, 2025 at 7:39 PM
Differential RNA modification analysis using nanopore dRNA-seq reveals exciting new insights into beta-cell glucose response. #RNAModifications #LongReadTranscriptomics #DirectRNA #dRNA #Nanopore
🚨 New from the Tilgner lab: Spl-ISO-Seq merges spatial transcriptomics with long reads at near-single-cell resolution. Reveals developmental isoform and polyA dynamics in human cortex. Introduces new tool Spl-ISOquant to process spatially barcoded long-read data.
#LongReadTranscriptomics #SingleCell
#LongReadTranscriptomics #SingleCell
A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types. https://www.biorxiv.org/content/10.1101/2025.06.10.658877v1
June 11, 2025 at 3:42 PM
🚨 New from the Tilgner lab: Spl-ISO-Seq merges spatial transcriptomics with long reads at near-single-cell resolution. Reveals developmental isoform and polyA dynamics in human cortex. Introduces new tool Spl-ISOquant to process spatially barcoded long-read data.
#LongReadTranscriptomics #SingleCell
#LongReadTranscriptomics #SingleCell