The devil hides in the details.
You can use the defaults, or spend a hole morning extracting the protein (or lipid) features so they show up.
#scientificAnimations #lipids #MolecularNodes
You can use the defaults, or spend a hole morning extracting the protein (or lipid) features so they show up.
#scientificAnimations #lipids #MolecularNodes
October 26, 2026 at 4:03 AM
The devil hides in the details.
You can use the defaults, or spend a hole morning extracting the protein (or lipid) features so they show up.
#scientificAnimations #lipids #MolecularNodes
You can use the defaults, or spend a hole morning extracting the protein (or lipid) features so they show up.
#scientificAnimations #lipids #MolecularNodes
Interested in #cryoEM and #GPCRs? 🤔
Our review 'Tools to investigate class B1 GPCR conformational landscapes with cryo-EM and beyond' was recently published and our image selected as issue cover in Biochem Society Transactions!🤩 👇
doi.org/10.1042/BST2...
Rendered using Blender #MolecularNodes👏
Our review 'Tools to investigate class B1 GPCR conformational landscapes with cryo-EM and beyond' was recently published and our image selected as issue cover in Biochem Society Transactions!🤩 👇
doi.org/10.1042/BST2...
Rendered using Blender #MolecularNodes👏
September 26, 2026 at 4:36 AM
Interested in #cryoEM and #GPCRs? 🤔
Our review 'Tools to investigate class B1 GPCR conformational landscapes with cryo-EM and beyond' was recently published and our image selected as issue cover in Biochem Society Transactions!🤩 👇
doi.org/10.1042/BST2...
Rendered using Blender #MolecularNodes👏
Our review 'Tools to investigate class B1 GPCR conformational landscapes with cryo-EM and beyond' was recently published and our image selected as issue cover in Biochem Society Transactions!🤩 👇
doi.org/10.1042/BST2...
Rendered using Blender #MolecularNodes👏
fun with visualizing AlphaGenome AVI scores on PDB structures via molecular nodes in blender 🧬
#AlphaGenome #MolecularNodes #blender #bioinformatics
#AlphaGenome #MolecularNodes #blender #bioinformatics
September 17, 2026 at 10:01 PM
fun with visualizing AlphaGenome AVI scores on PDB structures via molecular nodes in blender 🧬
#AlphaGenome #MolecularNodes #blender #bioinformatics
#AlphaGenome #MolecularNodes #blender #bioinformatics
🤯 This is how much space an IDR can occupy. Often hard to picture until you see it.
🤔 Did you expect this?
This is my favorite complex, Zincore.
Using Cryo-EM, I could only resolve the folded core. Here, I modeled the IDRs with AlphaFold3 and visualized it in Blender using MolecularNodes.
🤔 Did you expect this?
This is my favorite complex, Zincore.
Using Cryo-EM, I could only resolve the folded core. Here, I modeled the IDRs with AlphaFold3 and visualized it in Blender using MolecularNodes.
September 8, 2026 at 12:59 AM
🤯 This is how much space an IDR can occupy. Often hard to picture until you see it.
🤔 Did you expect this?
This is my favorite complex, Zincore.
Using Cryo-EM, I could only resolve the folded core. Here, I modeled the IDRs with AlphaFold3 and visualized it in Blender using MolecularNodes.
🤔 Did you expect this?
This is my favorite complex, Zincore.
Using Cryo-EM, I could only resolve the folded core. Here, I modeled the IDRs with AlphaFold3 and visualized it in Blender using MolecularNodes.
I'm running a 2-day in-person Blender / #MolecularNodes workshop in London next month - if you are interested be sure to register!
We are running an in-person Molecular Nodes workshop!
🗓️ Sept. 17-18, 2026
🕐 Day 1: 10:00-17:00 BST, Day 2: 10:00-15:30 BST
📍 @kingscollegelondon.bsky.social, Strand Campus
💷 Free, with lunch and coffee
❗ Application Deadline: Sept. 4 at 23:59 BST
🔗 Register here: www.mdanalysis.org/2026/08/18/m...
🗓️ Sept. 17-18, 2026
🕐 Day 1: 10:00-17:00 BST, Day 2: 10:00-15:30 BST
📍 @kingscollegelondon.bsky.social, Strand Campus
💷 Free, with lunch and coffee
❗ Application Deadline: Sept. 4 at 23:59 BST
🔗 Register here: www.mdanalysis.org/2026/08/18/m...
August 21, 2026 at 2:29 PM
I'm running a 2-day in-person Blender / #MolecularNodes workshop in London next month - if you are interested be sure to register!
Come learn #MolecularNodes with us, make your next cover art! 🧬🖥️ We bring the lunch, you bring your mouse. There WILL be swag.
We are running an in-person Molecular Nodes workshop!
🗓️ Sept. 17-18, 2026
🕐 Day 1: 10:00-17:00 BST, Day 2: 10:00-15:30 BST
📍 @kingscollegelondon.bsky.social, Strand Campus
💷 Free, with lunch and coffee
❗ Application Deadline: Sept. 4 at 23:59 BST
🔗 Register here: www.mdanalysis.org/2026/08/18/m...
🗓️ Sept. 17-18, 2026
🕐 Day 1: 10:00-17:00 BST, Day 2: 10:00-15:30 BST
📍 @kingscollegelondon.bsky.social, Strand Campus
💷 Free, with lunch and coffee
❗ Application Deadline: Sept. 4 at 23:59 BST
🔗 Register here: www.mdanalysis.org/2026/08/18/m...
August 21, 2026 at 2:34 PM
Come learn #MolecularNodes with us, make your next cover art! 🧬🖥️ We bring the lunch, you bring your mouse. There WILL be swag.
New animation of Zinc Finger transcription factors binding DNA. My favorite TF family.
👀 Excited to share more at the #EMBLTranscript Conference next week!
- Rendered in Blender with #MolecularNodes
👀 Excited to share more at the #EMBLTranscript Conference next week!
- Rendered in Blender with #MolecularNodes
August 20, 2026 at 11:40 PM
New animation of Zinc Finger transcription factors binding DNA. My favorite TF family.
👀 Excited to share more at the #EMBLTranscript Conference next week!
- Rendered in Blender with #MolecularNodes
👀 Excited to share more at the #EMBLTranscript Conference next week!
- Rendered in Blender with #MolecularNodes
S7 ⚡️⚡️ Sarah J Piper on GPCR PAC receptor subfamily. Cool animations #blender #molecularnodes #gunforhire
PAC1 variants have diverse signalling. Endog activators. VIP signalling on short PAC1?
H-bonding networks between peptide and receptors differ with potency.
+MD!
#lorneproteins2026
PAC1 variants have diverse signalling. Endog activators. VIP signalling on short PAC1?
H-bonding networks between peptide and receptors differ with potency.
+MD!
#lorneproteins2026
February 10, 2026 at 12:30 AM
S7 ⚡️⚡️ Sarah J Piper on GPCR PAC receptor subfamily. Cool animations #blender #molecularnodes #gunforhire
PAC1 variants have diverse signalling. Endog activators. VIP signalling on short PAC1?
H-bonding networks between peptide and receptors differ with potency.
+MD!
#lorneproteins2026
PAC1 variants have diverse signalling. Endog activators. VIP signalling on short PAC1?
H-bonding networks between peptide and receptors differ with potency.
+MD!
#lorneproteins2026
S7 ⚡️⚡️ Sarah J Piper on GPCR PAC receptor subfamily. Cool animations #blender #molecularnodes #gunforhire
PAC1 variants have diverse signalling. Endog activators. VIP signalling on short PAC1?
H-bonding networks between peptide and receptors differ with potency.
+MD!
#lorneproteins2026
PAC1 variants have diverse signalling. Endog activators. VIP signalling on short PAC1?
H-bonding networks between peptide and receptors differ with potency.
+MD!
#lorneproteins2026
February 10, 2026 at 12:27 AM
S7 ⚡️⚡️ Sarah J Piper on GPCR PAC receptor subfamily. Cool animations #blender #molecularnodes #gunforhire
PAC1 variants have diverse signalling. Endog activators. VIP signalling on short PAC1?
H-bonding networks between peptide and receptors differ with potency.
+MD!
#lorneproteins2026
PAC1 variants have diverse signalling. Endog activators. VIP signalling on short PAC1?
H-bonding networks between peptide and receptors differ with potency.
+MD!
#lorneproteins2026
Hi new science&art friends! it seems that science-skies has grown quite a bit from the last time! 👀👀👀
I need to be more active here, so here's a render I made a while ago: "phi29 bacteriophage"
#SciArt #Blender #Molecularnodes #artwork #digitalart
I need to be more active here, so here's a render I made a while ago: "phi29 bacteriophage"
#SciArt #Blender #Molecularnodes #artwork #digitalart
November 17, 2024 at 8:39 AM
Hi new science&art friends! it seems that science-skies has grown quite a bit from the last time! 👀👀👀
I need to be more active here, so here's a render I made a while ago: "phi29 bacteriophage"
#SciArt #Blender #Molecularnodes #artwork #digitalart
I need to be more active here, so here's a render I made a while ago: "phi29 bacteriophage"
#SciArt #Blender #Molecularnodes #artwork #digitalart
Thanks so much. Sounds like I'm after MolecularNodes in Blender :-)
July 5, 2025 at 1:14 PM
Thanks so much. Sounds like I'm after MolecularNodes in Blender :-)
Work in progress cartoon using Blender, Brady Johnston’s molecular nodes and PDB data from rcsb.org (don’t worry, more protons to come).
#molecularnodes #blender #stem #science
#molecularnodes #blender #stem #science
April 1, 2025 at 10:52 PM
Work in progress cartoon using Blender, Brady Johnston’s molecular nodes and PDB data from rcsb.org (don’t worry, more protons to come).
#molecularnodes #blender #stem #science
#molecularnodes #blender #stem #science
MolecularNodes
github.com/BradyAJohnst...
ChimeraX
cgl.ucsf.edu/chimerax/
SSDraw
github.com/ncbi/SSDraw
biopandas
biopandas.github.io/biopandas/
Fin
github.com/BradyAJohnst...
ChimeraX
cgl.ucsf.edu/chimerax/
SSDraw
github.com/ncbi/SSDraw
biopandas
biopandas.github.io/biopandas/
Fin
GitHub - BradyAJohnston/MolecularNodes: Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Toolbox for molecular animations in Blender, powered by Geometry Nodes. - BradyAJohnston/MolecularNodes
github.com
February 12, 2025 at 7:49 PM
MolecularNodes
github.com/BradyAJohnst...
ChimeraX
cgl.ucsf.edu/chimerax/
SSDraw
github.com/ncbi/SSDraw
biopandas
biopandas.github.io/biopandas/
Fin
github.com/BradyAJohnst...
ChimeraX
cgl.ucsf.edu/chimerax/
SSDraw
github.com/ncbi/SSDraw
biopandas
biopandas.github.io/biopandas/
Fin
Video created with #Blender3D and #MolecularNodes 🧡
Audio from Pixabay: late-night-big-band-swing-jazz-instrumental-236168
🔗 pixabay.com/music/tradit...
🧵 9/9
Audio from Pixabay: late-night-big-band-swing-jazz-instrumental-236168
🔗 pixabay.com/music/tradit...
🧵 9/9
March 16, 2025 at 10:15 AM
Video created with #Blender3D and #MolecularNodes 🧡
Audio from Pixabay: late-night-big-band-swing-jazz-instrumental-236168
🔗 pixabay.com/music/tradit...
🧵 9/9
Audio from Pixabay: late-night-big-band-swing-jazz-instrumental-236168
🔗 pixabay.com/music/tradit...
🧵 9/9
Was playing around with #virus strucures in #blender #b3d and #MolecularNodes ... this one turned out to look like a dying star 😅💥
not really scientifically accurate, but this was rather for fun at the moment and to try out a few things for future projects 😇
not really scientifically accurate, but this was rather for fun at the moment and to try out a few things for future projects 😇
December 10, 2024 at 5:01 PM
Was playing around with #virus strucures in #blender #b3d and #MolecularNodes ... this one turned out to look like a dying star 😅💥
not really scientifically accurate, but this was rather for fun at the moment and to try out a few things for future projects 😇
not really scientifically accurate, but this was rather for fun at the moment and to try out a few things for future projects 😇
📽 paper teaser oldie No. 3:
One of the last projects I was working on at UniGraz. A story that required patience & some obstacles to overcome. Perseverance paid off in the end 💪
BerglerLab / Haselbach Lab
www.nature.com/articles/s41...
#b3d #MolecularNodes
One of the last projects I was working on at UniGraz. A story that required patience & some obstacles to overcome. Perseverance paid off in the end 💪
BerglerLab / Haselbach Lab
www.nature.com/articles/s41...
#b3d #MolecularNodes
November 24, 2024 at 10:06 PM
📽 paper teaser oldie No. 3:
One of the last projects I was working on at UniGraz. A story that required patience & some obstacles to overcome. Perseverance paid off in the end 💪
BerglerLab / Haselbach Lab
www.nature.com/articles/s41...
#b3d #MolecularNodes
One of the last projects I was working on at UniGraz. A story that required patience & some obstacles to overcome. Perseverance paid off in the end 💪
BerglerLab / Haselbach Lab
www.nature.com/articles/s41...
#b3d #MolecularNodes
📽 Paper teaser oldie No. 2:
For all ribosome and (r)RNA enthusiasts out there: a recent RNAJournal method paper by the Bergler Lab, spearheaded by the magnificent Maggi Gerhalter! m.rnajournal.cshlp.org/content/30/7/8…#RNAN#b3d3#MolecularNodeses
(Music by PaoloArgento/Pixabay)
For all ribosome and (r)RNA enthusiasts out there: a recent RNAJournal method paper by the Bergler Lab, spearheaded by the magnificent Maggi Gerhalter! m.rnajournal.cshlp.org/content/30/7/8…#RNAN#b3d3#MolecularNodeses
(Music by PaoloArgento/Pixabay)
November 24, 2024 at 9:59 PM
📽 Paper teaser oldie No. 2:
For all ribosome and (r)RNA enthusiasts out there: a recent RNAJournal method paper by the Bergler Lab, spearheaded by the magnificent Maggi Gerhalter! m.rnajournal.cshlp.org/content/30/7/8…#RNAN#b3d3#MolecularNodeses
(Music by PaoloArgento/Pixabay)
For all ribosome and (r)RNA enthusiasts out there: a recent RNAJournal method paper by the Bergler Lab, spearheaded by the magnificent Maggi Gerhalter! m.rnajournal.cshlp.org/content/30/7/8…#RNAN#b3d3#MolecularNodeses
(Music by PaoloArgento/Pixabay)
To populate my 🦋 profile here a bit, a few oldies:
📽 Paper teaser No. 1:
A AAA-ATPase acting as a molecular machine on nascent ribosomes.
Wonderful collaboration between the Bergler and Haselbach Labs
doi.org/10.1038/s41594…
Made i#blenderer usin#MolecularNodeses
Sound on ;)
📽 Paper teaser No. 1:
A AAA-ATPase acting as a molecular machine on nascent ribosomes.
Wonderful collaboration between the Bergler and Haselbach Labs
doi.org/10.1038/s41594…
Made i#blenderer usin#MolecularNodeses
Sound on ;)
November 24, 2024 at 8:28 PM
To populate my 🦋 profile here a bit, a few oldies:
📽 Paper teaser No. 1:
A AAA-ATPase acting as a molecular machine on nascent ribosomes.
Wonderful collaboration between the Bergler and Haselbach Labs
doi.org/10.1038/s41594…
Made i#blenderer usin#MolecularNodeses
Sound on ;)
📽 Paper teaser No. 1:
A AAA-ATPase acting as a molecular machine on nascent ribosomes.
Wonderful collaboration between the Bergler and Haselbach Labs
doi.org/10.1038/s41594…
Made i#blenderer usin#MolecularNodeses
Sound on ;)
If you're interested in the structure: it's a cryo-EM structure from the Stanley lab showing a RNA binding protein involved in ribosome biogenesis www.nature.com/articles/s41...
Visualized with #blender #b3d and #MolecularNodes
Visualized with #blender #b3d and #MolecularNodes
Cryo-EM reveals active site coordination within a multienzyme pre-rRNA processing complex - Nature Structural & Molecular Biology
Cryo-EM structures of the multienzyme complex between the endoribonuclease Las1 and the polynucleotide kinase Grc3 reveal two molecular switches that coordinate nuclease and kinase function.
www.nature.com
November 24, 2024 at 10:37 AM
If you're interested in the structure: it's a cryo-EM structure from the Stanley lab showing a RNA binding protein involved in ribosome biogenesis www.nature.com/articles/s41...
Visualized with #blender #b3d and #MolecularNodes
Visualized with #blender #b3d and #MolecularNodes
#MIMG-102XL This week we focus on two #bacteriophages: T7 and Lambda. These 3D reconstruction were made using #blender with #MolecularNodes
#virology | #b3d | #blender3d
#virology | #b3d | #blender3d
April 17, 2025 at 10:20 PM
#MIMG-102XL This week we focus on two #bacteriophages: T7 and Lambda. These 3D reconstruction were made using #blender with #MolecularNodes
#virology | #b3d | #blender3d
#virology | #b3d | #blender3d
Thank you @bradyajohnston.bsky.social for creating #molecularnodes for #blender3d, making PDB file import and showing different protein representations a lot smoother.
December 1, 2025 at 11:25 AM
Thank you @bradyajohnston.bsky.social for creating #molecularnodes for #blender3d, making PDB file import and showing different protein representations a lot smoother.
I have created the video showcasing the PDIA6 condensate dynamics and function using Blender and the Molecular Nodes module! Visualizing science like never before. #Blender #MolecularNodes @bradyajohnston.bsky.social
August 11, 2025 at 10:14 AM
I have created the video showcasing the PDIA6 condensate dynamics and function using Blender and the Molecular Nodes module! Visualizing science like never before. #Blender #MolecularNodes @bradyajohnston.bsky.social